Wall clock time and date at job start Mon Mar 30 2020 04:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46710 * 2 1 4 4 C 1.50699 * 109.46940 * 240.00400 * 2 1 3 5 5 H 1.07997 * 120.00022 * 274.16607 * 4 2 1 6 6 C 1.37886 * 120.00045 * 94.16231 * 4 2 1 7 7 N 1.31512 * 119.99600 * 183.44153 * 6 4 2 8 8 Si 1.86797 * 119.99650 * 3.44381 * 6 4 2 9 9 H 1.48496 * 109.47384 * 93.12921 * 8 6 4 10 10 H 1.48507 * 109.46846 * 213.12695 * 8 6 4 11 11 H 1.48497 * 109.47391 * 333.12209 * 8 6 4 12 12 N 1.46495 * 109.47177 * 119.99975 * 2 1 3 13 13 C 1.46501 * 119.99537 * 60.00189 * 12 2 1 14 14 C 1.34774 * 120.00478 * 239.99497 * 12 2 1 15 15 O 1.21517 * 119.99692 * 4.86006 * 14 12 2 16 16 C 1.48178 * 120.00211 * 184.85504 * 14 12 2 17 17 C 1.39723 * 120.86125 * 321.96901 * 16 14 12 18 18 C 1.38733 * 119.07607 * 179.72512 * 17 16 14 19 19 O 1.35681 * 119.58536 * 180.22910 * 18 17 16 20 20 N 1.32258 * 120.83669 * 0.26376 * 18 17 16 21 21 C 1.32262 * 121.89704 * 359.97438 * 20 18 17 22 22 O 1.35681 * 119.58321 * 180.02562 * 21 20 18 23 23 C 1.38744 * 120.83610 * 359.97438 * 21 20 18 24 24 H 1.09008 * 109.46953 * 294.87047 * 1 2 3 25 25 H 1.09001 * 109.47247 * 54.86621 * 1 2 3 26 26 H 1.08993 * 109.47296 * 174.87356 * 1 2 3 27 27 H 0.97000 * 119.99359 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47399 * 264.73637 * 13 12 2 29 29 H 1.08995 * 109.47820 * 24.74117 * 13 12 2 30 30 H 1.09002 * 109.46959 * 144.73857 * 13 12 2 31 31 H 1.08003 * 120.45701 * 0.02562 * 17 16 14 32 32 H 0.96705 * 113.99986 * 90.00472 * 19 18 17 33 33 H 0.96700 * 113.99719 * 89.99596 * 22 21 20 34 34 H 1.07993 * 120.45958 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1482 -1.7840 -1.2247 6 6 2.3438 0.0106 -2.3639 7 7 2.7173 -0.6147 -3.4589 8 14 2.2353 1.8753 -2.3437 9 1 3.5626 2.4447 -1.9984 10 1 1.8219 2.3616 -3.6846 11 1 1.2352 2.3021 -1.3325 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0144 1.1503 1.9377 16 6 3.3756 -0.7618 3.2362 17 6 2.6466 -1.7494 3.9036 18 6 3.2301 -2.4100 4.9750 19 8 2.5332 -3.3741 5.6275 20 7 4.4569 -2.1115 5.3688 21 6 5.1771 -1.1801 4.7662 22 8 6.4313 -0.9122 5.2091 23 6 4.6667 -0.4742 3.6863 24 1 -0.3633 0.4322 0.9324 25 1 -0.3634 0.5914 -0.8404 26 1 -0.3633 -1.0235 -0.0918 27 1 2.9368 -0.1075 -4.2560 28 1 0.7906 -2.1449 2.0772 29 1 1.4384 -2.5731 0.4757 30 1 2.5011 -2.6053 1.9032 31 1 1.6446 -1.9985 3.5867 32 1 2.6560 -4.2621 5.2647 33 1 7.1197 -1.4429 4.7855 34 1 5.2602 0.2848 3.1986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701165480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:17 Heat of formation + Delta-G solvation = -61.543962 kcal Electronic energy + Delta-G solvation = -20254.058341 eV Core-core repulsion = 16960.738388 eV Total energy + Delta-G solvation = -3293.319953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99080 -39.19559 -38.14356 -36.20802 -35.67543 -33.28843 -32.31124 -30.42199 -29.53455 -26.64030 -25.41235 -24.60964 -23.50425 -21.47656 -19.73439 -18.37866 -18.24675 -17.39968 -16.89767 -16.41874 -16.05513 -15.96826 -15.42634 -14.79052 -14.32337 -14.10365 -13.26975 -13.01267 -12.76388 -12.60283 -12.51781 -12.39717 -12.24461 -11.82092 -11.51228 -11.37385 -11.17076 -10.82524 -10.58850 -10.04119 -9.94896 -9.83309 -9.41035 -9.23036 -8.92941 -8.71863 -7.90783 -6.27612 -4.31164 0.68243 0.73998 2.79709 3.06292 3.23149 3.31704 3.37776 3.50196 3.64455 3.94122 4.28647 4.55158 4.75657 4.85787 5.10986 5.17949 5.27646 5.51933 5.55283 5.72024 5.93734 6.08267 6.14591 6.21094 6.30005 6.46411 6.80044 6.93655 7.12806 7.28572 7.37853 7.47853 7.63374 7.90189 8.32289 8.60200 8.73340 9.33823 10.83878 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.005576 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.834588 B = 5020.180433 C = 5481.965371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.220 3.780 3 H 0.068 0.932 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.574 5.574 13 C 0.074 3.926 14 C 0.546 3.454 15 O -0.539 6.539 16 C -0.039 4.039 17 C -0.171 4.171 18 C 0.328 3.672 19 O -0.478 6.478 20 N -0.517 5.517 21 C 0.330 3.670 22 O -0.477 6.477 23 C -0.144 4.144 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.268 0.732 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.160 0.840 32 H 0.402 0.598 33 H 0.402 0.598 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -5.826 12.589 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 H 0.086 0.914 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.304 5.304 13 C -0.070 4.070 14 C 0.331 3.669 15 O -0.417 6.417 16 C -0.050 4.050 17 C -0.193 4.193 18 C 0.150 3.850 19 O -0.284 6.284 20 N -0.247 5.247 21 C 0.152 3.848 22 O -0.284 6.284 23 C -0.166 4.166 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.260 0.740 33 H 0.260 0.740 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.144 -4.761 13.653 14.504 hybrid contribution 0.135 0.442 -1.224 1.309 sum 1.279 -4.319 12.428 13.220 Atomic orbital electron populations 1.22221 0.97915 1.01053 0.99361 1.19483 0.91131 0.95101 0.82252 0.91399 1.21087 1.45294 0.95827 0.94481 0.90252 1.24948 0.93571 0.98579 0.95236 1.69880 1.44421 1.36180 1.01979 0.86909 0.79767 0.85934 0.77499 1.19795 1.21077 1.18386 1.48319 1.47728 1.11789 1.22531 1.22018 0.98920 0.83046 1.02990 1.18101 0.79946 0.86803 0.82020 1.90759 1.61110 1.14776 1.75089 1.20392 0.94016 0.94538 0.96024 1.22695 1.03063 0.97762 0.95740 1.18513 0.86362 0.91707 0.88466 1.84817 1.65613 1.19328 1.58692 1.66312 1.08531 1.18753 1.31121 1.18489 0.86788 0.90613 0.88940 1.84811 1.12908 1.63289 1.67412 1.22192 0.96319 1.01571 0.96488 0.95335 0.92406 0.93013 0.92248 0.93182 0.89378 0.92110 0.82297 0.74038 0.73965 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.09 37.16 0.34 -2.58 16 2 C 0.22 5.04 2.21 -69.08 -0.15 4.88 16 3 H 0.07 1.72 3.99 -51.93 -0.21 1.51 16 4 C -0.53 -13.78 8.70 -34.44 -0.30 -14.07 16 5 H 0.08 2.17 6.90 -52.49 -0.36 1.81 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 8 Si 0.87 21.24 27.03 -169.99 -4.60 16.65 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.26 -6.12 6.49 56.52 0.37 -5.75 16 12 N -0.57 -11.22 2.75 -176.25 -0.49 -11.71 16 13 C 0.07 1.09 7.98 59.85 0.48 1.57 16 14 C 0.55 10.77 7.41 -12.18 -0.09 10.68 16 15 O -0.54 -12.60 16.27 5.35 0.09 -12.51 16 16 C -0.04 -0.61 5.28 -104.71 -0.55 -1.16 16 17 C -0.17 -2.22 7.60 -38.84 -0.30 -2.52 16 18 C 0.33 4.18 7.73 -17.19 -0.13 4.05 16 19 O -0.48 -4.93 13.56 -18.74 -0.25 -5.19 16 20 N -0.52 -7.30 10.38 -13.45 -0.14 -7.44 16 21 C 0.33 4.49 7.73 -17.18 -0.13 4.35 16 22 O -0.48 -5.45 13.56 -18.74 -0.25 -5.70 16 23 C -0.14 -2.10 9.67 -38.84 -0.38 -2.48 16 24 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 25 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 26 H 0.05 0.94 7.84 -51.93 -0.41 0.54 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.05 0.60 6.88 -51.93 -0.36 0.24 16 29 H 0.09 1.41 6.63 -51.93 -0.34 1.07 16 30 H 0.06 0.78 5.84 -51.93 -0.30 0.47 16 31 H 0.16 1.78 5.28 -52.48 -0.28 1.51 16 32 H 0.40 1.97 9.06 45.56 0.41 2.38 16 33 H 0.40 2.41 9.06 45.56 0.41 2.82 16 34 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -34.50 291.03 -3.66 -38.16 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -1.86 Total: 3.43 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.31 Total: 4.85 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.15 Total: -44.06 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.42 Total: -23.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.60 Total: 16.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.50 -3.66 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.388 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds