Wall clock time and date at job start Mon Mar 30 2020 04:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46710 * 2 1 4 4 C 1.50699 * 109.46940 * 240.00400 * 2 1 3 5 5 H 1.07997 * 120.00022 * 274.16607 * 4 2 1 6 6 C 1.37886 * 120.00045 * 94.16231 * 4 2 1 7 7 N 1.31512 * 119.99600 * 183.44153 * 6 4 2 8 8 Si 1.86797 * 119.99650 * 3.44381 * 6 4 2 9 9 H 1.48496 * 109.47384 * 93.12921 * 8 6 4 10 10 H 1.48507 * 109.46846 * 213.12695 * 8 6 4 11 11 H 1.48497 * 109.47391 * 333.12209 * 8 6 4 12 12 N 1.46495 * 109.47177 * 119.99975 * 2 1 3 13 13 C 1.46501 * 119.99537 * 60.00189 * 12 2 1 14 14 C 1.34774 * 120.00478 * 239.99497 * 12 2 1 15 15 O 1.21517 * 119.99692 * 4.86006 * 14 12 2 16 16 C 1.48178 * 120.00211 * 184.85504 * 14 12 2 17 17 C 1.39723 * 120.86125 * 321.96901 * 16 14 12 18 18 C 1.38733 * 119.07607 * 179.72512 * 17 16 14 19 19 O 1.35681 * 119.58536 * 180.22910 * 18 17 16 20 20 N 1.32258 * 120.83669 * 0.26376 * 18 17 16 21 21 C 1.32262 * 121.89704 * 359.97438 * 20 18 17 22 22 O 1.35681 * 119.58321 * 180.02562 * 21 20 18 23 23 C 1.38744 * 120.83610 * 359.97438 * 21 20 18 24 24 H 1.09008 * 109.46953 * 294.87047 * 1 2 3 25 25 H 1.09001 * 109.47247 * 54.86621 * 1 2 3 26 26 H 1.08993 * 109.47296 * 174.87356 * 1 2 3 27 27 H 0.97000 * 119.99359 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47399 * 264.73637 * 13 12 2 29 29 H 1.08995 * 109.47820 * 24.74117 * 13 12 2 30 30 H 1.09002 * 109.46959 * 144.73857 * 13 12 2 31 31 H 1.08003 * 120.45701 * 0.02562 * 17 16 14 32 32 H 0.96705 * 113.99986 * 90.00472 * 19 18 17 33 33 H 0.96700 * 113.99719 * 89.99596 * 22 21 20 34 34 H 1.07993 * 120.45958 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1482 -1.7840 -1.2247 6 6 2.3438 0.0106 -2.3639 7 7 2.7173 -0.6147 -3.4589 8 14 2.2353 1.8753 -2.3437 9 1 3.5626 2.4447 -1.9984 10 1 1.8219 2.3616 -3.6846 11 1 1.2352 2.3021 -1.3325 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0144 1.1503 1.9377 16 6 3.3756 -0.7618 3.2362 17 6 2.6466 -1.7494 3.9036 18 6 3.2301 -2.4100 4.9750 19 8 2.5332 -3.3741 5.6275 20 7 4.4569 -2.1115 5.3688 21 6 5.1771 -1.1801 4.7662 22 8 6.4313 -0.9122 5.2091 23 6 4.6667 -0.4742 3.6863 24 1 -0.3633 0.4322 0.9324 25 1 -0.3634 0.5914 -0.8404 26 1 -0.3633 -1.0235 -0.0918 27 1 2.9368 -0.1075 -4.2560 28 1 0.7906 -2.1449 2.0772 29 1 1.4384 -2.5731 0.4757 30 1 2.5011 -2.6053 1.9032 31 1 1.6446 -1.9985 3.5867 32 1 2.6560 -4.2621 5.2647 33 1 7.1197 -1.4429 4.7855 34 1 5.2602 0.2848 3.1986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701165480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:17 Heat of formation + Delta-G solvation = -94.135919 kcal Electronic energy + Delta-G solvation = -20255.471634 eV Core-core repulsion = 16960.738388 eV Total energy + Delta-G solvation = -3294.733246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10636 -40.61123 -39.02652 -37.37639 -37.11327 -34.93594 -33.83173 -31.97172 -30.63749 -27.95877 -27.29668 -25.91972 -24.52470 -22.90485 -21.06391 -19.74979 -19.19489 -19.09969 -18.19783 -17.60077 -17.43936 -17.11653 -16.81837 -16.10507 -15.84055 -15.45142 -14.89746 -14.45923 -14.26036 -14.20635 -13.77362 -13.49514 -13.40644 -13.24506 -13.07977 -12.73379 -12.64588 -12.37636 -12.31196 -11.79398 -11.40359 -11.25695 -11.07563 -10.80702 -10.53628 -9.92275 -9.48704 -8.38345 -6.42792 -0.44417 -0.25786 1.26734 1.34136 1.42280 1.57570 1.85615 2.26142 2.28181 2.46621 3.00023 3.01226 3.32712 3.75200 3.78908 4.16907 4.30487 4.35201 4.40548 4.54318 4.59236 4.73585 4.78892 4.87553 4.95292 5.12972 5.18577 5.32513 5.50906 5.70528 6.09983 6.39642 6.56236 6.63341 6.66533 6.72306 7.06313 7.25872 8.76479 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.005576 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.834588 B = 5020.180433 C = 5481.965371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.219 3.781 3 H 0.043 0.957 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.920 3.080 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.248 1.248 12 N -0.580 5.580 13 C 0.068 3.932 14 C 0.542 3.458 15 O -0.586 6.586 16 C -0.051 4.051 17 C -0.160 4.160 18 C 0.341 3.659 19 O -0.478 6.478 20 N -0.531 5.531 21 C 0.340 3.660 22 O -0.482 6.482 23 C -0.156 4.156 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.181 0.819 32 H 0.427 0.573 33 H 0.425 0.575 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -6.865 14.643 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.117 3.883 3 H 0.061 0.939 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.745 3.255 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.172 1.172 12 N -0.309 5.309 13 C -0.073 4.073 14 C 0.329 3.671 15 O -0.468 6.468 16 C -0.062 4.062 17 C -0.182 4.182 18 C 0.162 3.838 19 O -0.289 6.289 20 N -0.261 5.261 21 C 0.161 3.839 22 O -0.293 6.293 23 C -0.178 4.178 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.198 0.802 32 H 0.290 0.710 33 H 0.288 0.712 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.310 -5.867 15.717 16.779 hybrid contribution 0.434 0.622 -1.738 1.896 sum 0.744 -5.245 13.979 14.949 Atomic orbital electron populations 1.22088 0.95315 1.02236 1.00189 1.19283 0.93032 0.93637 0.82330 0.93932 1.21322 1.43855 0.95064 0.95570 0.92282 1.25578 0.94020 1.01961 0.95248 1.69975 1.46809 1.37519 1.02734 0.86152 0.79305 0.82028 0.78017 1.21080 1.20116 1.17204 1.48226 1.47663 1.13536 1.21447 1.22308 1.01398 0.80296 1.03323 1.18623 0.79171 0.86476 0.82800 1.90723 1.62563 1.16952 1.76542 1.20033 0.94826 0.95840 0.95469 1.22769 1.03512 0.96505 0.95373 1.18560 0.85782 0.91739 0.87729 1.84777 1.65011 1.20544 1.58535 1.66448 1.09247 1.18955 1.31499 1.18405 0.87423 0.89898 0.88167 1.84759 1.12812 1.64142 1.67587 1.22173 0.96240 1.02068 0.97290 0.93314 0.93046 0.91395 0.92207 0.89344 0.90795 0.89891 0.80222 0.71022 0.71240 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.09 71.98 0.65 -4.64 16 2 C 0.22 9.88 2.21 44.25 0.10 9.98 16 3 H 0.04 2.16 3.99 -2.38 -0.01 2.15 16 4 C -0.52 -27.29 8.70 25.60 0.22 -27.07 16 5 H 0.06 3.29 6.90 -2.91 -0.02 3.27 16 6 C 0.03 1.78 5.47 84.66 0.46 2.24 16 7 N -0.93 -55.01 13.96 21.45 0.30 -54.71 16 8 Si 0.92 44.39 27.03 68.60 1.85 46.24 16 9 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.25 -11.41 6.49 99.48 0.65 -10.77 16 12 N -0.58 -21.98 2.75 -829.84 -2.28 -24.27 16 13 C 0.07 1.85 7.98 127.77 1.02 2.87 16 14 C 0.54 21.08 7.41 86.89 0.64 21.72 16 15 O -0.59 -27.78 16.27 -3.77 -0.06 -27.84 16 16 C -0.05 -1.53 5.28 -19.92 -0.11 -1.63 16 17 C -0.16 -3.66 7.60 22.75 0.17 -3.49 16 18 C 0.34 7.52 7.73 84.75 0.66 8.18 16 19 O -0.48 -7.88 13.56 -89.99 -1.22 -9.10 16 20 N -0.53 -13.53 10.38 -422.19 -4.38 -17.91 16 21 C 0.34 8.60 7.73 84.75 0.66 9.25 16 22 O -0.48 -10.09 13.56 -89.99 -1.22 -11.31 16 23 C -0.16 -4.42 9.67 22.75 0.22 -4.20 16 24 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.05 1.99 7.95 -2.39 -0.02 1.97 16 26 H 0.07 2.32 7.84 -2.39 -0.02 2.30 16 27 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.09 1.73 6.88 -2.39 -0.02 1.72 16 29 H 0.07 2.24 6.63 -2.39 -0.02 2.22 16 30 H 0.08 1.87 5.84 -2.39 -0.01 1.86 16 31 H 0.18 3.24 5.28 -2.91 -0.02 3.23 16 32 H 0.43 2.26 9.06 -74.05 -0.67 1.59 16 33 H 0.43 4.19 9.06 -74.06 -0.67 3.52 16 34 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -75.51 291.03 -2.54 -78.05 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -0.23 Total: 7.64 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 4.70 Total: 13.21 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -6.37 Total: -96.89 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -2.50 Total: -48.25 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.85 Total: 46.24 kcal Total: -75.51 -2.54 -78.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.087 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds