Wall clock time and date at job start Mon Mar 30 2020 04:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47583 * 2 1 4 4 C 1.50699 * 109.47032 * 120.00106 * 2 1 3 5 5 H 1.08007 * 120.00152 * 119.99917 * 4 2 1 6 6 C 1.37873 * 120.00407 * 300.00106 * 4 2 1 7 7 N 1.31515 * 119.99657 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00447 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46857 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47628 * 119.99385 * 8 6 4 11 11 H 1.48503 * 109.46975 * 239.99754 * 8 6 4 12 12 N 1.46498 * 109.47239 * 240.00083 * 2 1 3 13 13 C 1.46507 * 119.99944 * 300.00474 * 12 2 1 14 14 C 1.34776 * 120.00219 * 120.00163 * 12 2 1 15 15 O 1.21511 * 119.99842 * 356.34842 * 14 12 2 16 16 C 1.48181 * 119.99935 * 176.35645 * 14 12 2 17 17 C 1.39723 * 120.85874 * 215.35032 * 16 14 12 18 18 C 1.38742 * 119.07600 * 179.70858 * 17 16 14 19 19 O 1.35682 * 119.58271 * 180.29581 * 18 17 16 20 20 N 1.32251 * 120.82963 * 0.57960 * 18 17 16 21 21 C 1.32258 * 121.90594 * 359.71560 * 20 18 17 22 22 O 1.35684 * 119.58579 * 180.02562 * 21 20 18 23 23 C 1.38738 * 120.83062 * 359.97438 * 21 20 18 24 24 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47067 * 299.99931 * 1 2 3 26 26 H 1.08999 * 109.47050 * 59.99388 * 1 2 3 27 27 H 0.97003 * 119.99561 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47438 * 95.35324 * 13 12 2 29 29 H 1.09004 * 109.46792 * 215.35322 * 13 12 2 30 30 H 1.09000 * 109.47071 * 335.34810 * 13 12 2 31 31 H 1.07998 * 120.46070 * 359.97438 * 17 16 14 32 32 H 0.96705 * 113.99695 * 270.28038 * 19 18 17 33 33 H 0.96698 * 113.99890 * 269.98020 * 22 21 20 34 34 H 1.08005 * 120.45988 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2865 3.6037 10 1 3.1473 -0.1860 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0322 1.1453 -1.9257 16 6 3.3536 -0.7556 -3.2509 17 6 4.6236 -0.4440 -3.7431 18 6 5.1146 -1.1457 -4.8346 19 8 6.3491 -0.8557 -5.3172 20 7 4.3922 -2.0898 -5.4141 21 6 3.1839 -2.4098 -4.9818 22 8 2.4840 -3.3868 -5.6116 23 6 2.6234 -1.7597 -3.8918 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7095 1.1616 3.4845 28 1 0.7915 -2.1448 -2.0788 29 1 2.5016 -2.6056 -1.9019 30 1 1.4367 -2.5727 -0.4760 31 1 5.2166 0.3294 -3.2776 32 1 6.3538 -0.1692 -5.9983 33 1 1.9278 -3.0679 -6.3355 34 1 1.6360 -2.0255 -3.5441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701165482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:20 Heat of formation + Delta-G solvation = -61.347694 kcal Electronic energy + Delta-G solvation = -20158.264372 eV Core-core repulsion = 16864.952930 eV Total energy + Delta-G solvation = -3293.311442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.95959 -39.08696 -38.12979 -36.17326 -35.56216 -33.35209 -32.27983 -29.93170 -29.15506 -26.53943 -25.32377 -24.54461 -23.47037 -21.49696 -19.79209 -18.28121 -18.21855 -17.16869 -16.62366 -16.45244 -16.09651 -15.57172 -15.25121 -14.75214 -14.45293 -14.13496 -13.13759 -13.00195 -12.69602 -12.61335 -12.45516 -12.18074 -11.74277 -11.53255 -11.34720 -11.12976 -10.91679 -10.81747 -10.34434 -10.26259 -9.96421 -9.86219 -9.30416 -9.15742 -8.90864 -8.51337 -7.79502 -6.15491 -4.24064 0.70772 0.75628 2.82160 3.19238 3.22142 3.30428 3.32998 3.48224 3.80179 3.95957 4.32901 4.64287 4.77977 4.89113 5.16339 5.19842 5.29790 5.58078 5.63579 5.81365 5.97852 6.12269 6.26795 6.65451 6.72104 6.94191 7.13818 7.23895 7.38222 7.39345 7.61828 7.65022 7.90113 8.06964 8.31756 8.64700 8.84018 9.42807 10.89949 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026937 B = 0.004971 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.204030 B = 5631.425097 C = 5853.006606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.577 5.577 13 C 0.073 3.927 14 C 0.544 3.456 15 O -0.536 6.536 16 C -0.040 4.040 17 C -0.143 4.143 18 C 0.329 3.671 19 O -0.477 6.477 20 N -0.517 5.517 21 C 0.327 3.673 22 O -0.477 6.477 23 C -0.173 4.173 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.401 0.599 33 H 0.401 0.599 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 -4.645 -14.415 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.307 5.307 13 C -0.070 4.070 14 C 0.329 3.671 15 O -0.415 6.415 16 C -0.051 4.051 17 C -0.165 4.165 18 C 0.150 3.850 19 O -0.284 6.284 20 N -0.247 5.247 21 C 0.148 3.852 22 O -0.284 6.284 23 C -0.194 4.194 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.259 0.741 33 H 0.258 0.742 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.382 -5.130 -14.049 15.145 hybrid contribution -0.326 0.358 0.768 0.908 sum 2.056 -4.772 -13.280 14.261 Atomic orbital electron populations 1.22091 0.97752 0.99603 1.01034 1.19079 0.91194 0.94574 0.79457 0.91623 1.21331 1.32120 1.13219 0.90135 0.92044 1.24887 0.94816 0.94942 0.99023 1.69885 1.36188 1.22487 1.23834 0.86413 0.78646 0.79607 0.82589 1.19761 1.20828 1.20848 1.48237 1.47501 1.11761 1.23156 1.22028 0.98841 0.83157 1.02972 1.18039 0.80047 0.86774 0.82219 1.90762 1.60364 1.15001 1.75370 1.20462 0.94165 0.94612 0.95844 1.22200 0.95542 1.01191 0.97581 1.18487 0.84883 0.90406 0.91249 1.84821 1.22154 1.61784 1.59629 1.66296 1.07456 1.16327 1.34652 1.18513 0.87195 0.88324 0.91156 1.84822 1.60316 1.31461 1.51793 1.22779 1.03350 0.95916 0.97369 0.94978 0.88610 0.96856 0.92609 0.93230 0.92184 0.89407 0.82796 0.74079 0.74154 0.82120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.97 37.16 0.33 -3.02 16 2 C 0.26 6.32 2.63 -69.08 -0.18 6.14 16 3 H 0.07 1.87 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -13.89 7.95 -34.44 -0.27 -14.17 16 5 H 0.06 1.60 7.42 -52.48 -0.39 1.21 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.40 11.32 55.43 0.63 -23.78 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.58 -11.87 2.75 -176.25 -0.49 -12.36 16 13 C 0.07 1.19 7.78 59.85 0.47 1.66 16 14 C 0.54 11.01 7.44 -12.18 -0.09 10.92 16 15 O -0.54 -12.76 16.23 5.36 0.09 -12.67 16 16 C -0.04 -0.63 5.34 -104.71 -0.56 -1.19 16 17 C -0.14 -2.09 9.65 -38.84 -0.37 -2.47 16 18 C 0.33 4.46 7.73 -17.18 -0.13 4.33 16 19 O -0.48 -5.41 13.56 -18.75 -0.25 -5.67 16 20 N -0.52 -7.34 10.38 -13.45 -0.14 -7.48 16 21 C 0.33 4.22 7.74 -17.18 -0.13 4.09 16 22 O -0.48 -5.02 13.56 -18.75 -0.25 -5.27 16 23 C -0.17 -2.30 7.60 -38.84 -0.30 -2.59 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.05 0.67 6.81 -51.93 -0.35 0.31 16 29 H 0.06 0.88 5.84 -51.93 -0.30 0.58 16 30 H 0.09 1.51 7.11 -51.93 -0.37 1.14 16 31 H 0.15 2.20 8.05 -52.49 -0.42 1.77 16 32 H 0.40 2.32 9.06 45.56 0.41 2.74 16 33 H 0.40 2.03 9.06 45.56 0.41 2.45 16 34 H 0.16 1.89 5.07 -52.48 -0.27 1.63 16 LS Contribution 292.31 15.07 4.41 4.41 Total: -1.00 -33.34 292.31 -4.28 -37.62 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -1.91 Total: 4.24 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.34 Total: 5.35 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.00 Total: -43.62 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.42 Total: -23.61 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.34 -4.28 -37.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.728 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds