Wall clock time and date at job start Mon Mar 30 2020 04:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47583 * 2 1 4 4 C 1.50699 * 109.47032 * 120.00106 * 2 1 3 5 5 H 1.08007 * 120.00152 * 119.99917 * 4 2 1 6 6 C 1.37873 * 120.00407 * 300.00106 * 4 2 1 7 7 N 1.31515 * 119.99657 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00447 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46857 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47628 * 119.99385 * 8 6 4 11 11 H 1.48503 * 109.46975 * 239.99754 * 8 6 4 12 12 N 1.46498 * 109.47239 * 240.00083 * 2 1 3 13 13 C 1.46507 * 119.99944 * 300.00474 * 12 2 1 14 14 C 1.34776 * 120.00219 * 120.00163 * 12 2 1 15 15 O 1.21511 * 119.99842 * 356.34842 * 14 12 2 16 16 C 1.48181 * 119.99935 * 176.35645 * 14 12 2 17 17 C 1.39723 * 120.85874 * 215.35032 * 16 14 12 18 18 C 1.38742 * 119.07600 * 179.70858 * 17 16 14 19 19 O 1.35682 * 119.58271 * 180.29581 * 18 17 16 20 20 N 1.32251 * 120.82963 * 0.57960 * 18 17 16 21 21 C 1.32258 * 121.90594 * 359.71560 * 20 18 17 22 22 O 1.35684 * 119.58579 * 180.02562 * 21 20 18 23 23 C 1.38738 * 120.83062 * 359.97438 * 21 20 18 24 24 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47067 * 299.99931 * 1 2 3 26 26 H 1.08999 * 109.47050 * 59.99388 * 1 2 3 27 27 H 0.97003 * 119.99561 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47438 * 95.35324 * 13 12 2 29 29 H 1.09004 * 109.46792 * 215.35322 * 13 12 2 30 30 H 1.09000 * 109.47071 * 335.34810 * 13 12 2 31 31 H 1.07998 * 120.46070 * 359.97438 * 17 16 14 32 32 H 0.96705 * 113.99695 * 270.28038 * 19 18 17 33 33 H 0.96698 * 113.99890 * 269.98020 * 22 21 20 34 34 H 1.08005 * 120.45988 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2865 3.6037 10 1 3.1473 -0.1860 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0322 1.1453 -1.9257 16 6 3.3536 -0.7556 -3.2509 17 6 4.6236 -0.4440 -3.7431 18 6 5.1146 -1.1457 -4.8346 19 8 6.3491 -0.8557 -5.3172 20 7 4.3922 -2.0898 -5.4141 21 6 3.1839 -2.4098 -4.9818 22 8 2.4840 -3.3868 -5.6116 23 6 2.6234 -1.7597 -3.8918 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.7095 1.1616 3.4845 28 1 0.7915 -2.1448 -2.0788 29 1 2.5016 -2.6056 -1.9019 30 1 1.4367 -2.5727 -0.4760 31 1 5.2166 0.3294 -3.2776 32 1 6.3538 -0.1692 -5.9983 33 1 1.9278 -3.0679 -6.3355 34 1 1.6360 -2.0255 -3.5441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701165482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:20 Heat of formation + Delta-G solvation = -92.131093 kcal Electronic energy + Delta-G solvation = -20159.599240 eV Core-core repulsion = 16864.952930 eV Total energy + Delta-G solvation = -3294.646311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09629 -40.56072 -39.02240 -37.34214 -37.10694 -35.04539 -33.68745 -31.39817 -30.53396 -27.94372 -27.32123 -25.89325 -24.50940 -23.01365 -21.15770 -19.62289 -19.16061 -18.55747 -18.26296 -17.68829 -17.33804 -17.04823 -16.63053 -16.18107 -15.95478 -15.41616 -14.82092 -14.44605 -14.17050 -13.78354 -13.61634 -13.45639 -13.37116 -13.02312 -12.84462 -12.72506 -12.59145 -12.32848 -12.22101 -12.12973 -11.34827 -11.20328 -11.03696 -10.59610 -10.48598 -9.92213 -9.47092 -8.17200 -6.33465 -0.44789 -0.25439 1.40761 1.42912 1.53033 1.60291 2.02628 2.12851 2.42149 2.55956 3.00141 3.11694 3.31957 3.75030 3.79610 4.17627 4.31095 4.35813 4.46786 4.61463 4.75397 4.88054 4.90355 4.97506 5.03592 5.18835 5.44341 5.51289 5.63413 5.98323 6.12436 6.39983 6.61891 6.67341 6.71852 6.72894 7.11910 7.38735 8.87565 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026937 B = 0.004971 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.204030 B = 5631.425097 C = 5853.006606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.583 5.583 13 C 0.070 3.930 14 C 0.539 3.461 15 O -0.585 6.585 16 C -0.051 4.051 17 C -0.153 4.153 18 C 0.340 3.660 19 O -0.481 6.481 20 N -0.529 5.529 21 C 0.341 3.659 22 O -0.477 6.477 23 C -0.163 4.163 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.265 0.735 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.426 0.574 33 H 0.426 0.574 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -6.887 -15.712 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.033 0.967 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.072 4.072 14 C 0.327 3.673 15 O -0.467 6.467 16 C -0.062 4.062 17 C -0.175 4.175 18 C 0.161 3.839 19 O -0.292 6.292 20 N -0.260 5.260 21 C 0.162 3.838 22 O -0.288 6.288 23 C -0.184 4.184 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.288 0.712 33 H 0.289 0.711 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.322 -7.395 -15.403 17.244 hybrid contribution -0.289 1.047 1.050 1.511 sum 2.033 -6.348 -14.353 15.825 Atomic orbital electron populations 1.21875 0.96437 1.00484 1.00273 1.18688 0.92145 0.92348 0.80966 0.96748 1.21571 1.32109 1.13187 0.91031 0.92115 1.25681 0.94987 0.95588 1.01881 1.70017 1.37119 1.23696 1.24488 0.85423 0.78242 0.78453 0.78983 1.19137 1.21158 1.19874 1.48185 1.47576 1.13394 1.22032 1.22288 1.01007 0.80438 1.03424 1.18637 0.79226 0.86412 0.83037 1.90724 1.61892 1.17301 1.76818 1.20038 0.95121 0.95928 0.95089 1.22178 0.95388 1.01635 0.98288 1.18391 0.85109 0.89796 0.90589 1.84766 1.20966 1.62834 1.60639 1.66444 1.08093 1.16603 1.34867 1.18527 0.86891 0.87684 0.90712 1.84777 1.60493 1.30701 1.52810 1.22813 1.03633 0.94876 0.97090 0.93085 0.91237 0.95707 0.92526 0.89728 0.90317 0.90407 0.83392 0.71229 0.71124 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.97 71.98 0.65 -5.45 16 2 C 0.26 13.14 2.63 44.24 0.12 13.25 16 3 H 0.01 0.88 6.90 -2.39 -0.02 0.86 16 4 C -0.54 -28.70 7.95 25.60 0.20 -28.50 16 5 H 0.06 3.16 7.42 -2.91 -0.02 3.14 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.91 -51.48 11.32 21.45 0.24 -51.23 16 8 Si 0.96 42.37 29.54 68.60 2.03 44.40 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 N -0.58 -23.97 2.75 -829.82 -2.28 -26.25 16 13 C 0.07 2.12 7.78 127.77 0.99 3.12 16 14 C 0.54 22.16 7.44 86.89 0.65 22.80 16 15 O -0.59 -29.19 16.23 -3.75 -0.06 -29.25 16 16 C -0.05 -1.58 5.34 -19.92 -0.11 -1.69 16 17 C -0.15 -4.37 9.65 22.75 0.22 -4.15 16 18 C 0.34 8.60 7.73 84.75 0.66 9.25 16 19 O -0.48 -9.94 13.56 -90.00 -1.22 -11.16 16 20 N -0.53 -13.56 10.38 -422.19 -4.38 -17.94 16 21 C 0.34 7.69 7.74 84.75 0.66 8.35 16 22 O -0.48 -8.10 13.56 -90.02 -1.22 -9.32 16 23 C -0.16 -3.89 7.60 22.75 0.17 -3.72 16 24 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 25 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.08 1.97 6.81 -2.39 -0.02 1.96 16 29 H 0.08 2.10 5.84 -2.38 -0.01 2.08 16 30 H 0.08 2.54 7.11 -2.39 -0.02 2.52 16 31 H 0.15 4.32 8.05 -2.91 -0.02 4.30 16 32 H 0.43 3.96 9.06 -74.05 -0.67 3.29 16 33 H 0.43 2.49 9.06 -74.06 -0.67 1.82 16 34 H 0.18 3.54 5.07 -2.91 -0.01 3.52 16 Total: -1.00 -73.54 292.31 -2.41 -75.95 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.17 Total: 10.08 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 4.65 Total: 14.72 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -6.42 Total: -95.43 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -2.50 Total: -49.72 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -73.54 -2.41 -75.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.178 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds