Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99872 * 2 1 4 4 C 1.52999 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46987 * 55.48939 * 4 3 2 6 6 C 1.36902 * 120.00392 * 264.53670 * 5 4 3 7 7 H 1.07996 * 119.99702 * 140.44305 * 6 5 4 8 8 C 1.39020 * 119.99928 * 320.44205 * 6 5 4 9 9 N 1.31380 * 120.00096 * 166.47568 * 8 6 5 10 10 Si 1.86801 * 120.00114 * 346.47797 * 8 6 5 11 11 H 1.48505 * 109.47053 * 90.89733 * 10 8 6 12 12 H 1.48505 * 109.47266 * 210.89599 * 10 8 6 13 13 H 1.48497 * 109.47286 * 330.89801 * 10 8 6 14 14 C 1.34775 * 119.99721 * 84.54075 * 5 4 3 15 15 O 1.21630 * 120.00024 * 7.32914 * 14 5 4 16 16 C 1.47416 * 120.00010 * 187.33324 * 14 5 4 17 17 C 1.40043 * 120.60295 * 326.99433 * 16 14 5 18 18 C 1.38323 * 118.34489 * 180.26905 * 17 16 14 19 19 C 1.38368 * 119.46122 * 359.45640 * 18 17 16 20 20 N 1.31892 * 121.20033 * 0.30482 * 19 18 17 21 21 C 1.32218 * 121.80683 * 359.97438 * 20 19 18 22 22 O 1.35434 * 119.80619 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46944 * 300.00306 * 1 2 3 25 25 H 1.09002 * 109.46766 * 59.99550 * 1 2 3 26 26 H 1.09002 * 109.46612 * 60.00282 * 3 2 1 27 27 H 1.08994 * 109.47127 * 299.99929 * 3 2 1 28 28 H 1.09004 * 109.47476 * 295.49437 * 4 3 2 29 29 H 1.08997 * 109.47362 * 175.49453 * 4 3 2 30 30 H 0.96994 * 120.00277 * 179.97438 * 9 8 6 31 31 H 1.08004 * 120.82812 * 0.02562 * 17 16 14 32 32 H 1.08001 * 120.27029 * 179.73657 * 18 17 16 33 33 H 1.08006 * 119.39609 * 180.27802 * 19 18 17 34 34 H 0.96704 * 114.00092 * 89.99144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9609 0.3658 -1.1372 6 6 4.1904 -0.9733 -0.9691 7 1 3.8832 -1.6737 -1.7316 8 6 4.8189 -1.4315 0.1831 9 7 4.8047 -2.7126 0.4740 10 14 5.6838 -0.2257 1.3178 11 1 4.7300 0.2536 2.3503 12 1 6.8294 -0.9018 1.9781 13 1 6.1794 0.9296 0.5274 14 6 4.1264 0.9309 -2.3496 15 8 4.0534 2.1387 -2.4726 16 6 4.3959 0.0850 -3.5264 17 6 5.1346 -1.0980 -3.4000 18 6 5.3646 -1.8531 -4.5359 19 6 4.8541 -1.4290 -5.7500 20 7 4.1565 -0.3138 -5.8457 21 6 3.9123 0.4480 -4.7930 22 8 3.1907 1.5849 -4.9376 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8624 0.7152 0.9285 29 1 3.9786 2.1773 -0.0801 30 1 5.2435 -3.0324 1.2777 31 1 5.5186 -1.4109 -2.4403 32 1 5.9341 -2.7688 -4.4748 33 1 5.0305 -2.0218 -6.6354 34 1 2.2380 1.4632 -4.8251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701167156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -51.260795 kcal Electronic energy + Delta-G solvation = -21010.545388 eV Core-core repulsion = 17717.671346 eV Total energy + Delta-G solvation = -3292.874042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18667 -38.56894 -37.05374 -36.56872 -34.88717 -32.28298 -32.02379 -30.11077 -29.06686 -25.96651 -25.24154 -23.72682 -22.93284 -22.09901 -19.39753 -18.37370 -17.59543 -16.66099 -16.26138 -15.87037 -15.48610 -15.40618 -14.78121 -14.63149 -14.30254 -13.99962 -13.64967 -12.99865 -12.75556 -12.52958 -12.36236 -12.05862 -11.87815 -11.70732 -11.45925 -11.19383 -10.93684 -10.85277 -10.18422 -9.92982 -9.31730 -9.25869 -9.15094 -9.13295 -8.58194 -8.36394 -7.85446 -6.51356 -4.13651 1.27575 1.75346 2.98476 3.15694 3.20804 3.62250 3.92155 4.04647 4.17825 4.40023 4.42343 4.89338 5.19641 5.47795 5.48308 5.52044 5.63714 5.64815 5.70213 5.77819 5.86448 5.96359 5.97864 6.08004 6.23505 6.30854 6.71181 6.74648 7.07014 7.24511 7.69464 7.95291 7.98974 8.13662 8.31873 8.84419 9.22992 9.54662 10.57094 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.009145 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.808780 B = 3061.017097 C = 3780.892865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.053 3.947 4 C 0.097 3.903 5 N -0.448 5.448 6 C -0.334 4.334 7 H 0.111 0.889 8 C 0.067 3.933 9 N -0.859 5.859 10 Si 0.881 3.119 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.261 1.261 14 C 0.524 3.476 15 O -0.578 6.578 16 C -0.164 4.164 17 C -0.015 4.015 18 C -0.201 4.201 19 C 0.121 3.879 20 N -0.521 5.521 21 C 0.338 3.662 22 O -0.466 6.466 23 H 0.081 0.919 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.276 0.724 31 H 0.182 0.818 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 1.221 -2.662 4.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C -0.025 4.025 4 C -0.026 4.026 5 N -0.167 5.167 6 C -0.461 4.461 7 H 0.128 0.872 8 C -0.141 4.141 9 N -0.494 5.494 10 Si 0.709 3.291 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.185 1.185 14 C 0.313 3.687 15 O -0.462 6.462 16 C -0.170 4.170 17 C -0.041 4.041 18 C -0.221 4.221 19 C -0.036 4.036 20 N -0.240 5.240 21 C 0.159 3.841 22 O -0.271 6.271 23 H 0.100 0.900 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.199 0.801 32 H 0.154 0.846 33 H 0.170 0.830 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.020 2.068 -3.427 5.014 hybrid contribution -0.108 0.107 1.660 1.667 sum -3.127 2.175 -1.767 4.199 Atomic orbital electron populations 1.22674 0.82944 1.02152 0.98828 1.88216 1.17710 1.26507 1.95042 1.22875 0.94856 0.85332 0.99456 1.21851 0.92405 0.96938 0.91419 1.43449 1.58144 1.08964 1.06178 1.19175 1.38112 0.80636 1.08149 0.87202 1.25284 0.96007 0.95823 0.96942 1.69662 1.40479 1.13559 1.25699 0.86921 0.79268 0.81740 0.81150 1.19991 1.21521 1.18503 1.17793 0.80728 0.86728 0.83457 1.90688 1.55852 1.13896 1.85775 1.21036 1.04375 0.97543 0.94071 1.22949 0.90405 0.89869 1.00842 1.22160 1.03791 1.02637 0.93562 1.22504 0.92510 0.91219 0.97411 1.67135 1.17681 1.06106 1.33111 1.19168 0.92907 0.85289 0.86786 1.84759 1.22308 1.26464 1.93572 0.90040 0.95023 0.94941 0.93659 0.93291 0.90507 0.89592 0.91345 0.80104 0.84572 0.82951 0.75129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.29 10.06 -35.23 -0.35 -7.65 16 3 C 0.05 1.00 6.30 37.16 0.23 1.24 16 4 C 0.10 2.08 4.37 -4.04 -0.02 2.06 16 5 N -0.45 -10.49 2.05 -116.03 -0.24 -10.73 16 6 C -0.33 -8.18 6.40 -15.00 -0.10 -8.28 16 7 H 0.11 2.84 6.04 -52.49 -0.32 2.52 16 8 C 0.07 1.67 5.40 -17.46 -0.09 1.58 16 9 N -0.86 -22.42 13.95 55.50 0.77 -21.64 16 10 Si 0.88 19.72 24.71 -169.99 -4.20 15.52 16 11 H -0.27 -5.91 6.61 56.52 0.37 -5.54 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.26 -5.92 7.07 56.52 0.40 -5.52 16 14 C 0.52 12.35 7.23 -12.52 -0.09 12.26 16 15 O -0.58 -14.59 15.53 -12.89 -0.20 -14.79 16 16 C -0.16 -3.52 5.57 -104.69 -0.58 -4.11 16 17 C -0.02 -0.30 7.80 -38.87 -0.30 -0.60 16 18 C -0.20 -3.25 10.09 -39.50 -0.40 -3.65 16 19 C 0.12 1.90 11.17 -17.48 -0.20 1.70 16 20 N -0.52 -9.72 10.37 -12.96 -0.13 -9.85 16 21 C 0.34 6.86 7.74 -16.59 -0.13 6.73 16 22 O -0.47 -9.02 12.17 -36.13 -0.44 -9.46 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.70 3.04 -51.93 -0.16 1.54 16 29 H 0.09 1.78 7.50 -51.93 -0.39 1.39 16 30 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.18 3.83 5.40 -52.48 -0.28 3.55 16 32 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.39 5.75 9.06 45.56 0.41 6.16 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -31.05 288.89 -3.86 -34.91 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -2.86 Total: 8.81 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.56 Total: 10.52 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.40 Total: -42.22 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.99 Total: -31.90 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.20 Total: 15.52 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.05 -3.86 -34.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701167156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.349 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds