Wall clock time and date at job start Mon Mar 30 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99872 * 2 1 4 4 C 1.52999 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46987 * 55.48939 * 4 3 2 6 6 C 1.36902 * 120.00392 * 264.53670 * 5 4 3 7 7 H 1.07996 * 119.99702 * 140.44305 * 6 5 4 8 8 C 1.39020 * 119.99928 * 320.44205 * 6 5 4 9 9 N 1.31380 * 120.00096 * 166.47568 * 8 6 5 10 10 Si 1.86801 * 120.00114 * 346.47797 * 8 6 5 11 11 H 1.48505 * 109.47053 * 90.89733 * 10 8 6 12 12 H 1.48505 * 109.47266 * 210.89599 * 10 8 6 13 13 H 1.48497 * 109.47286 * 330.89801 * 10 8 6 14 14 C 1.34775 * 119.99721 * 84.54075 * 5 4 3 15 15 O 1.21630 * 120.00024 * 7.32914 * 14 5 4 16 16 C 1.47416 * 120.00010 * 187.33324 * 14 5 4 17 17 C 1.40043 * 120.60295 * 326.99433 * 16 14 5 18 18 C 1.38323 * 118.34489 * 180.26905 * 17 16 14 19 19 C 1.38368 * 119.46122 * 359.45640 * 18 17 16 20 20 N 1.31892 * 121.20033 * 0.30482 * 19 18 17 21 21 C 1.32218 * 121.80683 * 359.97438 * 20 19 18 22 22 O 1.35434 * 119.80619 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46944 * 300.00306 * 1 2 3 25 25 H 1.09002 * 109.46766 * 59.99550 * 1 2 3 26 26 H 1.09002 * 109.46612 * 60.00282 * 3 2 1 27 27 H 1.08994 * 109.47127 * 299.99929 * 3 2 1 28 28 H 1.09004 * 109.47476 * 295.49437 * 4 3 2 29 29 H 1.08997 * 109.47362 * 175.49453 * 4 3 2 30 30 H 0.96994 * 120.00277 * 179.97438 * 9 8 6 31 31 H 1.08004 * 120.82812 * 0.02562 * 17 16 14 32 32 H 1.08001 * 120.27029 * 179.73657 * 18 17 16 33 33 H 1.08006 * 119.39609 * 180.27802 * 19 18 17 34 34 H 0.96704 * 114.00092 * 89.99144 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9609 0.3658 -1.1372 6 6 4.1904 -0.9733 -0.9691 7 1 3.8832 -1.6737 -1.7316 8 6 4.8189 -1.4315 0.1831 9 7 4.8047 -2.7126 0.4740 10 14 5.6838 -0.2257 1.3178 11 1 4.7300 0.2536 2.3503 12 1 6.8294 -0.9018 1.9781 13 1 6.1794 0.9296 0.5274 14 6 4.1264 0.9309 -2.3496 15 8 4.0534 2.1387 -2.4726 16 6 4.3959 0.0850 -3.5264 17 6 5.1346 -1.0980 -3.4000 18 6 5.3646 -1.8531 -4.5359 19 6 4.8541 -1.4290 -5.7500 20 7 4.1565 -0.3138 -5.8457 21 6 3.9123 0.4480 -4.7930 22 8 3.1907 1.5849 -4.9376 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8624 0.7152 0.9285 29 1 3.9786 2.1773 -0.0801 30 1 5.2435 -3.0324 1.2777 31 1 5.5186 -1.4109 -2.4403 32 1 5.9341 -2.7688 -4.4748 33 1 5.0305 -2.0218 -6.6354 34 1 2.2380 1.4632 -4.8251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701167156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:42 Heat of formation + Delta-G solvation = -76.212204 kcal Electronic energy + Delta-G solvation = -21011.627362 eV Core-core repulsion = 17717.671346 eV Total energy + Delta-G solvation = -3293.956016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74689 -40.20985 -38.56967 -38.04057 -36.69879 -34.01231 -33.68267 -31.58848 -30.60173 -27.30054 -27.05390 -25.26832 -24.44426 -23.61683 -21.16049 -19.94435 -19.24755 -18.31310 -17.88314 -17.32076 -16.97341 -16.89499 -16.43437 -16.22438 -15.85489 -15.49600 -15.33009 -14.59676 -14.42682 -14.13708 -13.88409 -13.63985 -13.43126 -13.18630 -13.11928 -12.64952 -12.58925 -12.34664 -11.95287 -11.66023 -11.13320 -10.86701 -10.67115 -10.55309 -10.24036 -9.85531 -9.66513 -8.42867 -6.06348 -0.18178 0.29200 1.19501 1.33357 1.41268 1.92531 2.19498 2.39590 2.64790 2.86485 2.95051 3.12895 3.82603 3.93648 4.08163 4.13238 4.14192 4.23327 4.38460 4.46355 4.51525 4.56785 4.62101 4.70108 4.70662 4.82698 5.28474 5.31766 5.41726 5.66666 6.05683 6.22186 6.35728 6.61025 6.91650 6.95626 7.36512 7.70523 8.68467 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.009145 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.808780 B = 3061.017097 C = 3780.892865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.058 3.942 4 C 0.086 3.914 5 N -0.454 5.454 6 C -0.320 4.320 7 H 0.092 0.908 8 C 0.035 3.965 9 N -0.893 5.893 10 Si 0.923 3.077 11 H -0.260 1.260 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.521 3.479 15 O -0.602 6.602 16 C -0.198 4.198 17 C -0.026 4.026 18 C -0.190 4.190 19 C 0.136 3.864 20 N -0.530 5.530 21 C 0.332 3.668 22 O -0.479 6.479 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.279 0.721 31 H 0.161 0.839 32 H 0.173 0.827 33 H 0.204 0.796 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 0.915 -3.420 4.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.019 4.019 4 C -0.036 4.036 5 N -0.174 5.174 6 C -0.448 4.448 7 H 0.109 0.891 8 C -0.170 4.170 9 N -0.530 5.530 10 Si 0.751 3.249 11 H -0.186 1.186 12 H -0.212 1.212 13 H -0.194 1.194 14 C 0.311 3.689 15 O -0.488 6.488 16 C -0.204 4.204 17 C -0.052 4.052 18 C -0.209 4.209 19 C -0.021 4.021 20 N -0.250 5.250 21 C 0.153 3.847 22 O -0.287 6.287 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.190 0.810 33 H 0.221 0.779 34 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.232 1.765 -4.173 5.565 hybrid contribution -0.082 0.160 1.759 1.768 sum -3.314 1.925 -2.414 4.529 Atomic orbital electron populations 1.22877 0.80431 1.03194 1.00497 1.88144 1.20596 1.27353 1.95376 1.22803 0.92954 0.85275 1.00878 1.22003 0.94613 0.96573 0.90411 1.43522 1.58384 1.08693 1.06801 1.18963 1.37483 0.80860 1.07497 0.89112 1.25690 0.96506 0.96756 0.98019 1.69718 1.41983 1.14711 1.26592 0.86236 0.78711 0.79904 0.80080 1.18611 1.21242 1.19447 1.18175 0.79929 0.86739 0.84078 1.90647 1.56989 1.14903 1.86259 1.21019 1.06822 0.98659 0.93906 1.22791 0.90924 0.90029 1.01435 1.22509 1.03012 1.02990 0.92391 1.23355 0.89776 0.90091 0.98891 1.67279 1.18492 1.07015 1.32214 1.19232 0.93119 0.85605 0.86758 1.84692 1.23755 1.26742 1.93519 0.89415 0.92648 0.93865 0.90353 0.93554 0.91109 0.89328 0.91126 0.82207 0.80993 0.77928 0.73233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -15.91 10.06 -148.98 -1.50 -17.41 16 3 C 0.06 2.16 6.30 71.98 0.45 2.62 16 4 C 0.09 3.70 4.37 86.38 0.38 4.08 16 5 N -0.45 -21.56 2.05 -639.26 -1.31 -22.87 16 6 C -0.32 -16.00 6.40 84.09 0.54 -15.47 16 7 H 0.09 4.83 6.04 -2.91 -0.02 4.81 16 8 C 0.03 1.74 5.40 84.95 0.46 2.20 16 9 N -0.89 -47.14 13.95 21.68 0.30 -46.84 16 10 Si 0.92 40.65 24.71 68.60 1.70 42.34 16 11 H -0.26 -10.80 6.61 99.48 0.66 -10.14 16 12 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.27 -12.14 7.07 99.48 0.70 -11.44 16 14 C 0.52 24.97 7.23 86.66 0.63 25.59 16 15 O -0.60 -30.84 15.53 13.21 0.21 -30.64 16 16 C -0.20 -8.55 5.57 -19.91 -0.11 -8.66 16 17 C -0.03 -1.02 7.80 22.73 0.18 -0.84 16 18 C -0.19 -5.63 10.09 22.32 0.23 -5.40 16 19 C 0.14 3.78 11.17 84.71 0.95 4.73 16 20 N -0.53 -18.63 10.37 -307.93 -3.19 -21.83 16 21 C 0.33 13.28 7.74 85.15 0.66 13.94 16 22 O -0.48 -18.48 12.17 -69.95 -0.85 -19.33 16 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 3.09 3.04 -2.39 -0.01 3.08 16 29 H 0.09 3.67 7.50 -2.39 -0.02 3.66 16 30 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.16 6.93 5.40 -2.91 -0.02 6.91 16 32 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.20 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.41 11.95 9.06 -74.05 -0.67 11.28 16 Total: -1.00 -67.39 288.89 1.37 -66.02 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.42 Total: 25.77 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 5.60 Total: 24.79 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.20 Total: -91.54 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: -2.15 Total: -67.38 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.70 Total: 42.34 kcal Total: -67.39 1.37 -66.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701167156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.191 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds