Wall clock time and date at job start Mon Mar 30 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00326 * 2 1 4 4 C 1.53001 * 109.47442 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47195 * 64.99512 * 4 3 2 6 6 C 1.36820 * 120.00059 * 270.00343 * 5 4 3 7 7 H 1.07998 * 120.00110 * 133.70256 * 6 5 4 8 8 C 1.39085 * 120.00107 * 313.69874 * 6 5 4 9 9 N 1.31342 * 120.00341 * 171.68407 * 8 6 5 10 10 Si 1.86801 * 119.99532 * 351.68480 * 8 6 5 11 11 H 1.48501 * 109.46892 * 95.02167 * 10 8 6 12 12 H 1.48502 * 109.46806 * 215.01522 * 10 8 6 13 13 H 1.48493 * 109.47454 * 335.01607 * 10 8 6 14 14 C 1.34777 * 119.99932 * 90.00267 * 5 4 3 15 15 O 1.21600 * 120.00224 * 5.06533 * 14 5 4 16 16 C 1.47686 * 119.99767 * 185.05971 * 14 5 4 17 17 N 1.32914 * 119.79485 * 354.38826 * 16 14 5 18 18 C 1.31389 * 121.68936 * 179.97438 * 17 16 14 19 19 C 1.38751 * 121.06966 * 359.97438 * 18 17 16 20 20 C 1.38346 * 119.46242 * 0.02625 * 19 18 17 21 21 C 1.39301 * 118.44756 * 0.02562 * 20 19 18 22 22 O 1.35653 * 120.54096 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46928 * 300.00624 * 1 2 3 25 25 H 1.09007 * 109.46722 * 60.00136 * 1 2 3 26 26 H 1.09002 * 109.47214 * 59.99629 * 3 2 1 27 27 H 1.09006 * 109.46767 * 299.99863 * 3 2 1 28 28 H 1.09002 * 109.46318 * 304.99427 * 4 3 2 29 29 H 1.08995 * 109.47078 * 184.99959 * 4 3 2 30 30 H 0.96998 * 120.00051 * 185.00649 * 9 8 6 31 31 H 1.07997 * 119.46688 * 180.02562 * 18 17 16 32 32 H 1.07995 * 120.27141 * 179.97438 * 19 18 17 33 33 H 1.08003 * 120.77709 * 179.72107 * 20 19 18 34 34 H 0.96698 * 114.00052 * 89.99679 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 3.9758 0.5643 -1.2526 6 6 4.0967 -0.7960 -1.3366 7 1 3.6926 -1.3225 -2.1886 8 6 4.7401 -1.5008 -0.3249 9 7 4.7149 -2.8139 -0.3207 10 14 5.6402 -0.5796 1.0282 11 1 4.7412 -0.4173 2.1990 12 1 6.8455 -1.3472 1.4323 13 1 6.0493 0.7577 0.5290 14 6 4.2616 1.3335 -2.3218 15 8 4.2435 2.5452 -2.2213 16 6 4.5970 0.7048 -3.6153 17 7 4.7254 -0.6158 -3.6942 18 6 5.0223 -1.2140 -4.8256 19 6 5.2145 -0.4865 -5.9914 20 6 5.0919 0.8912 -5.9617 21 6 4.7776 1.5035 -4.7506 22 8 4.6478 2.8515 -4.6729 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8901 28 1 3.8514 0.5682 0.8410 29 1 3.9786 2.1764 0.0889 30 1 5.1005 -3.3041 0.4222 31 1 5.1175 -2.2896 -4.8489 32 1 5.4585 -0.9915 -6.9143 33 1 5.2414 1.4787 -6.8555 34 1 3.7497 3.1703 -4.8373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701228349.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:33 Heat of formation + Delta-G solvation = -70.242121 kcal Electronic energy + Delta-G solvation = -20946.917872 eV Core-core repulsion = 17653.220738 eV Total energy + Delta-G solvation = -3293.697134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65961 -40.07053 -38.55316 -38.13263 -36.55475 -33.81598 -33.29956 -31.48967 -30.57600 -27.26403 -26.83079 -25.34146 -24.34407 -23.58152 -21.16732 -19.70643 -19.16841 -18.26261 -17.77946 -17.30144 -17.03818 -16.58232 -16.28442 -16.19493 -15.98640 -15.39381 -15.31439 -14.53981 -14.36685 -14.12938 -13.97001 -13.57959 -13.45291 -13.21401 -13.05122 -12.64011 -12.42956 -12.24066 -11.88088 -11.66674 -11.01301 -10.80481 -10.66540 -10.52121 -10.00454 -9.75393 -9.33820 -8.19129 -5.87309 -0.20962 0.36447 1.19768 1.30775 1.37424 1.95674 2.27323 2.49021 2.94890 2.95560 3.17708 3.25657 3.71062 3.94753 4.03640 4.09724 4.13657 4.21466 4.37640 4.46827 4.54671 4.57511 4.68607 4.71720 4.75347 4.85040 5.14856 5.15298 5.59283 5.69540 6.25803 6.39189 6.61149 6.78380 7.01738 7.26655 7.50112 7.78312 8.89736 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.008697 C = 0.007474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.266026 B = 3218.913217 C = 3745.266537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.064 3.936 4 C 0.089 3.911 5 N -0.451 5.451 6 C -0.269 4.269 7 H 0.111 0.889 8 C 0.023 3.977 9 N -0.910 5.910 10 Si 0.915 3.085 11 H -0.260 1.260 12 H -0.293 1.293 13 H -0.275 1.275 14 C 0.511 3.489 15 O -0.598 6.598 16 C 0.032 3.968 17 N -0.425 5.425 18 C 0.058 3.942 19 C -0.121 4.121 20 C -0.113 4.113 21 C 0.095 3.905 22 O -0.484 6.484 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.270 0.730 31 H 0.172 0.828 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 5.477 -8.355 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.014 4.014 4 C -0.033 4.033 5 N -0.170 5.170 6 C -0.398 4.398 7 H 0.128 0.872 8 C -0.177 4.177 9 N -0.550 5.550 10 Si 0.744 3.256 11 H -0.186 1.186 12 H -0.221 1.221 13 H -0.200 1.200 14 C 0.302 3.698 15 O -0.484 6.484 16 C -0.106 4.106 17 N -0.137 5.137 18 C -0.102 4.102 19 C -0.141 4.141 20 C -0.139 4.139 21 C 0.046 3.954 22 O -0.295 6.295 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.189 0.811 32 H 0.202 0.798 33 H 0.196 0.804 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.788 5.290 -7.293 9.773 hybrid contribution -0.061 0.701 0.298 0.764 sum -3.849 5.991 -6.995 9.982 Atomic orbital electron populations 1.22873 0.80352 1.03215 1.00474 1.88152 1.20734 1.27512 1.95359 1.22776 0.92598 0.85174 1.00831 1.21931 0.94658 0.98744 0.87973 1.43760 1.56441 1.07198 1.09633 1.19356 1.32449 0.79233 1.08806 0.87155 1.25774 0.96741 0.95634 0.99598 1.69641 1.46521 1.06670 1.32192 0.86310 0.78947 0.79003 0.81344 1.18641 1.22085 1.20019 1.18457 0.80310 0.85880 0.85203 1.90618 1.58593 1.13768 1.85408 1.21693 1.03646 0.90625 0.94590 1.68715 1.08050 1.09082 1.27895 1.23594 0.96300 1.02177 0.88173 1.22697 0.97054 0.93644 1.00685 1.22196 0.99005 0.95688 0.96962 1.19670 0.98981 0.84262 0.92505 1.84702 1.35292 1.15838 1.93665 0.89432 0.92458 0.93977 0.90061 0.93719 0.91999 0.89082 0.92021 0.81128 0.79818 0.80436 0.73742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.84 10.18 -148.98 -1.52 -18.36 16 3 C 0.06 2.47 6.28 71.98 0.45 2.92 16 4 C 0.09 4.08 4.39 86.38 0.38 4.46 16 5 N -0.45 -23.22 2.07 -639.01 -1.32 -24.55 16 6 C -0.27 -15.03 7.57 84.12 0.64 -14.39 16 7 H 0.11 6.63 6.05 -2.91 -0.02 6.62 16 8 C 0.02 1.32 5.45 84.97 0.46 1.78 16 9 N -0.91 -53.85 13.95 21.69 0.30 -53.54 16 10 Si 0.92 45.57 24.70 68.60 1.69 47.27 16 11 H -0.26 -12.13 6.90 99.48 0.69 -11.45 16 12 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 13 H -0.27 -13.92 6.84 99.48 0.68 -13.24 16 14 C 0.51 25.73 7.60 86.74 0.66 26.38 16 15 O -0.60 -30.47 14.71 16.89 0.25 -30.22 16 16 C 0.03 1.43 6.67 41.90 0.28 1.71 16 17 N -0.43 -19.02 6.31 -184.66 -1.17 -20.19 16 18 C 0.06 1.93 11.17 84.88 0.95 2.87 16 19 C -0.12 -2.89 10.10 22.42 0.23 -2.66 16 20 C -0.11 -2.89 10.12 22.55 0.23 -2.66 16 21 C 0.09 3.38 6.74 22.95 0.15 3.54 16 22 O -0.48 -16.54 11.60 -68.76 -0.80 -17.33 16 23 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.06 2.93 3.41 -2.39 -0.01 2.92 16 29 H 0.09 3.99 7.36 -2.39 -0.02 3.97 16 30 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.17 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.40 10.24 9.06 -74.06 -0.67 9.57 16 Total: -1.00 -75.87 290.57 3.54 -72.32 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.42 Total: 18.58 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 5.68 Total: 26.02 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -2.19 Total: -98.28 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -2.06 Total: -65.91 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.69 Total: 47.27 kcal Total: -75.87 3.54 -72.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701228349.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.082 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds