Wall clock time and date at job start Mon Mar 30 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00020 * 2 1 4 4 C 1.50699 * 109.47266 * 269.99351 * 3 2 1 5 5 O 1.21285 * 119.99578 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99984 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00037 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47369 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.37886 * 120.00107 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99804 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00053 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47240 * 59.99702 * 12 10 8 14 14 H 1.48502 * 109.47088 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46821 * 299.99828 * 12 10 8 16 16 C 1.34781 * 119.99946 * 179.97438 * 2 1 3 17 17 O 1.21689 * 119.99982 * 183.38150 * 16 2 1 18 18 C 1.46658 * 119.99778 * 3.38862 * 16 2 1 19 19 C 1.36546 * 125.98878 * 173.22091 * 18 16 2 20 20 C 1.40362 * 106.71224 * 180.02562 * 19 18 16 21 21 C 1.35130 * 107.11121 * 359.97438 * 20 19 18 22 22 O 1.33931 * 108.77225 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47473 * 264.01060 * 1 2 3 24 24 H 1.08997 * 109.47230 * 24.01467 * 1 2 3 25 25 H 1.09000 * 109.46878 * 144.01278 * 1 2 3 26 26 H 1.08998 * 109.47430 * 30.00124 * 3 2 1 27 27 H 1.09002 * 109.46772 * 149.99751 * 3 2 1 28 28 H 0.96997 * 120.00497 * 359.97438 * 6 4 3 29 29 H 1.09005 * 109.46963 * 299.99770 * 7 6 4 30 30 H 1.09004 * 109.47303 * 59.99356 * 7 6 4 31 31 H 0.97003 * 119.99955 * 179.97438 * 11 10 8 32 32 H 1.08004 * 126.64401 * 359.97438 * 19 18 16 33 33 H 1.07995 * 126.44172 * 180.02562 * 20 19 18 34 34 H 1.08004 * 125.61662 * 180.26274 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0544 1.0213 -2.3426 6 7 3.1118 2.8509 -1.6670 7 6 3.3556 3.2740 -3.0482 8 6 4.1092 4.5790 -3.0482 9 1 4.3792 5.0468 -2.1130 10 6 4.4541 5.1760 -4.2423 11 7 4.1250 4.6067 -5.3813 12 14 5.3889 6.7933 -4.2423 13 1 6.6864 6.6151 -3.5424 14 1 5.6359 7.2222 -5.6424 15 1 4.5868 7.8285 -3.5422 16 6 2.1389 -1.1672 0.0005 17 8 3.3542 -1.1681 0.0627 18 6 1.4075 -2.4362 -0.0740 19 6 1.9633 -3.6758 -0.2123 20 6 0.9015 -4.5934 -0.2393 21 6 -0.2414 -3.8829 -0.1173 22 8 0.0675 -2.5834 -0.0181 23 1 -0.3634 -0.1072 1.0220 24 1 -0.3633 0.9387 -0.4182 25 1 -0.3633 -0.8315 -0.6039 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1383 0.5139 28 1 3.4269 3.3968 -0.9298 29 1 3.9442 2.5142 -3.5625 30 1 2.4031 3.4049 -3.5617 31 1 4.3673 5.0269 -6.2213 32 1 3.0159 -3.9055 -0.2873 33 1 0.9828 -5.6658 -0.3381 34 1 -1.2394 -4.2952 -0.0985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701229887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:55 Heat of formation + Delta-G solvation = -45.792729 kcal Electronic energy + Delta-G solvation = -19603.038719 eV Core-core repulsion = 16310.401790 eV Total energy + Delta-G solvation = -3292.636928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.84170 -39.87173 -38.31757 -35.55100 -34.13406 -33.19554 -32.34553 -30.55595 -28.82322 -27.04600 -26.23821 -23.25210 -22.20365 -21.87955 -20.25635 -19.58318 -17.85740 -17.37161 -16.68949 -16.53388 -16.17253 -15.73435 -14.96377 -14.61763 -14.55318 -14.07563 -13.68737 -13.41227 -13.17657 -13.03482 -12.86353 -12.70642 -12.33833 -11.97205 -11.93714 -11.40429 -10.99883 -10.85349 -10.33430 -10.27459 -10.20618 -9.52339 -9.40798 -8.89068 -8.72844 -8.47632 -7.89205 -6.15623 -4.22814 0.97455 2.20967 2.48945 2.92461 3.20822 3.26212 3.30952 3.32423 3.32612 4.13446 4.37138 4.41214 4.74721 4.79340 5.10436 5.19776 5.21702 5.34965 5.44120 5.52991 5.55442 5.59127 5.64964 5.91056 6.16491 6.28678 6.69142 7.21994 7.30408 7.42127 7.52412 7.66097 7.97169 8.00008 8.60779 8.77609 9.07739 9.43547 10.94569 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.003510 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.802042 B = 7976.240178 C = 8042.506254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.588 5.588 3 C 0.094 3.906 4 C 0.481 3.519 5 O -0.547 6.547 6 N -0.710 5.710 7 C 0.251 3.749 8 C -0.544 4.544 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.606 3.394 17 O -0.517 6.517 18 C -0.066 4.066 19 C -0.124 4.124 20 C -0.224 4.224 21 C -0.018 4.018 22 O -0.158 6.158 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.391 0.609 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.266 0.734 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 -13.321 14.202 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.319 5.319 3 C -0.032 4.032 4 C 0.264 3.736 5 O -0.426 6.426 6 N -0.359 5.359 7 C 0.130 3.870 8 C -0.582 4.582 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.732 3.268 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.394 3.606 17 O -0.395 6.395 18 C -0.117 4.117 19 C -0.144 4.144 20 C -0.243 4.243 21 C -0.088 4.088 22 O -0.053 6.053 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.224 0.776 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.809 -13.489 13.368 21.375 hybrid contribution 0.600 0.916 0.064 1.097 sum -9.208 -12.573 13.432 20.575 Atomic orbital electron populations 1.22003 0.78261 1.04188 1.01843 1.47193 1.07538 1.04906 1.72226 1.21471 0.99806 0.85571 0.96386 1.20869 0.79538 0.82151 0.91011 1.90669 1.51935 1.54030 1.45956 1.46423 1.55505 1.22108 1.11856 1.19101 0.96732 0.94828 0.76322 1.21192 1.37711 1.06280 0.93056 0.91872 1.24961 0.95792 0.98079 0.95207 1.69969 1.45610 1.39210 0.97526 0.86459 0.80184 0.82970 0.77198 1.20019 1.21080 1.20065 1.16609 0.86101 0.81253 0.76668 1.90880 1.12032 1.85977 1.50587 1.22015 0.80561 0.96106 1.13065 1.21974 1.01300 0.90503 1.00664 1.21837 0.91913 1.01213 1.09302 1.24456 1.00684 0.80716 1.02953 1.84304 1.23552 1.27345 1.70123 0.92225 0.90368 0.89825 0.87442 0.86906 0.77615 0.95555 0.95572 0.92386 0.82274 0.82741 0.77531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 9.63 59.85 0.58 1.49 16 2 N -0.59 -8.79 2.36 -184.52 -0.44 -9.23 16 3 C 0.09 1.39 5.89 -5.20 -0.03 1.35 16 4 C 0.48 9.84 7.90 -10.99 -0.09 9.75 16 5 O -0.55 -13.64 16.43 5.55 0.09 -13.54 16 6 N -0.71 -15.10 5.55 -61.47 -0.34 -15.45 16 7 C 0.25 6.77 5.43 -5.20 -0.03 6.74 16 8 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 12 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.61 10.12 7.64 -12.86 -0.10 10.02 16 17 O -0.52 -10.14 16.43 5.20 0.09 -10.06 16 18 C -0.07 -0.92 6.77 -36.80 -0.25 -1.17 16 19 C -0.12 -1.54 10.63 -39.39 -0.42 -1.96 16 20 C -0.22 -2.08 10.88 -39.89 -0.43 -2.51 16 21 C -0.02 -0.15 12.08 29.63 0.36 0.20 16 22 O -0.16 -1.79 7.29 4.99 0.04 -1.75 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 25 H 0.08 0.99 5.40 -51.93 -0.28 0.71 16 26 H 0.11 1.15 8.07 -51.93 -0.42 0.73 16 27 H 0.11 1.60 7.38 -51.93 -0.38 1.22 16 28 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 32 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.21 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -36.32 305.47 -4.98 -41.30 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.91 Total: 3.45 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.83 Total: 10.37 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.04 Total: -50.35 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.21 Total: -25.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.32 -4.98 -41.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701229887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.489 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds