Wall clock time and date at job start Mon Mar 30 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86805 * 119.99925 * 2 1 4 4 H 1.48496 * 109.47134 * 240.00108 * 3 2 1 5 5 H 1.48496 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47044 * 119.99881 * 3 2 1 7 7 C 1.38813 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99812 * 196.93286 * 7 2 1 9 9 N 1.36934 * 119.99863 * 16.93339 * 7 2 1 10 10 C 1.46958 * 120.59648 * 208.55110 * 9 7 2 11 11 C 1.53365 * 108.64083 * 235.20633 * 10 9 7 12 12 N 1.46972 * 108.63245 * 310.57482 * 11 10 9 13 13 C 1.34773 * 120.59453 * 235.19862 * 12 11 10 14 14 O 1.21737 * 120.00070 * 5.70827 * 13 12 11 15 15 C 1.46378 * 119.99861 * 185.70581 * 13 12 11 16 16 C 1.36722 * 126.82517 * 222.55334 * 15 13 12 17 17 N 1.33224 * 107.96186 * 179.73893 * 16 15 13 18 18 C 1.31545 * 109.76165 * 0.26259 * 17 16 15 19 19 O 1.35205 * 125.49169 * 179.97438 * 18 17 16 20 20 N 1.34937 * 109.01451 * 0.02562 * 18 17 16 21 21 H 0.97000 * 126.54900 * 180.02562 * 20 18 17 22 22 C 1.46973 * 118.81048 * 55.47692 * 12 11 10 23 23 C 1.46972 * 120.59433 * 28.53049 * 9 7 2 24 24 H 0.97005 * 120.00528 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.60900 * 115.46160 * 10 9 7 26 26 H 1.08996 * 109.74862 * 355.03901 * 10 9 7 27 27 H 1.09001 * 109.61804 * 190.83192 * 11 10 9 28 28 H 1.09004 * 109.61102 * 70.31568 * 11 10 9 29 29 H 1.07996 * 126.02206 * 0.02562 * 16 15 13 30 30 H 0.96701 * 113.99811 * 90.02091 * 19 18 17 31 31 H 1.09000 * 109.60553 * 64.26686 * 22 12 11 32 32 H 1.08993 * 109.60544 * 184.77644 * 22 12 11 33 33 H 1.08994 * 109.61275 * 244.54184 * 23 9 7 34 34 H 1.09001 * 109.60657 * 5.05275 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2224 0.2719 9 7 1.3701 -2.3622 -0.3465 10 6 1.8094 -3.6518 0.2045 11 6 2.1067 -4.6061 -0.9588 12 7 0.9677 -4.5836 -1.8873 13 6 0.3377 -5.7254 -2.2279 14 8 0.6420 -6.7730 -1.6876 15 6 -0.7125 -5.7058 -3.2474 16 6 -1.9088 -6.3663 -3.2044 17 7 -2.5762 -6.0806 -4.3214 18 6 -1.8591 -5.2748 -5.0743 19 8 -2.2326 -4.7857 -6.2782 20 7 -0.6901 -5.0160 -4.4519 21 1 0.0269 -4.4515 -4.7809 22 6 0.5319 -3.2946 -2.4428 23 6 0.2311 -2.3397 -1.2750 24 1 -0.4851 0.8400 0.0004 25 1 1.0201 -4.0708 0.8288 26 1 2.7107 -3.5098 0.8007 27 1 2.2468 -5.6170 -0.5761 28 1 3.0082 -4.2805 -1.4778 29 1 -2.2540 -7.0035 -2.4037 30 1 -2.7081 -3.9450 -6.2308 31 1 1.3240 -2.8779 -3.0649 32 1 -0.3681 -3.4393 -3.0402 33 1 -0.6704 -2.6652 -0.7562 34 1 0.0911 -1.3288 -1.6578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701321844.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:30 Heat of formation + Delta-G solvation = 28.074360 kcal Electronic energy + Delta-G solvation = -20491.960698 eV Core-core repulsion = 17234.819638 eV Total energy + Delta-G solvation = -3257.141060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30266 -39.46581 -37.52379 -36.87285 -34.10962 -32.89363 -31.47253 -30.36341 -29.21010 -27.01556 -24.22168 -23.22953 -22.63765 -21.70518 -20.80706 -19.86958 -18.59447 -17.66416 -16.85293 -16.22029 -15.86235 -15.31302 -15.05633 -14.78694 -13.99598 -13.87286 -13.68870 -13.64292 -13.41313 -13.39299 -12.48482 -12.30572 -11.84166 -11.46199 -10.94692 -10.89006 -10.63429 -10.44686 -10.37440 -10.35290 -10.08559 -9.99067 -9.76188 -8.73771 -8.59815 -8.38451 -6.83718 -5.96457 -3.41682 1.25009 2.34111 2.57807 3.03308 3.27354 3.33969 3.34121 3.39990 3.84312 4.34932 4.60889 4.97673 5.09544 5.22018 5.27768 5.58389 5.60887 5.66898 5.78873 5.87334 6.03145 6.18156 6.25970 6.31058 6.51241 6.67025 6.77507 7.03279 7.29934 7.41443 7.58692 7.64094 7.72619 8.24463 8.26467 9.00631 9.62947 10.19800 11.11491 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.005557 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.792063 B = 5037.865828 C = 5827.189079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.130 3.870 11 C 0.096 3.904 12 N -0.590 5.590 13 C 0.587 3.413 14 O -0.537 6.537 15 C -0.056 4.056 16 C 0.067 3.933 17 N -0.487 5.487 18 C 0.396 3.604 19 O -0.444 6.444 20 N -0.551 5.551 21 H 0.424 0.576 22 C 0.073 3.927 23 C 0.161 3.839 24 H 0.257 0.743 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.187 0.813 30 H 0.407 0.593 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -5.896 -8.861 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.028 4.028 12 N -0.322 5.322 13 C 0.373 3.627 14 O -0.414 6.414 15 C -0.172 4.172 16 C -0.086 4.086 17 N -0.217 5.217 18 C 0.095 3.905 19 O -0.245 6.245 20 N -0.170 5.170 21 H 0.265 0.735 22 C -0.051 4.051 23 C 0.034 3.966 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.204 0.796 30 H 0.264 0.736 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.723 -7.027 -9.060 11.594 hybrid contribution 1.229 2.127 -0.004 2.457 sum -0.494 -4.900 -9.064 10.315 Atomic orbital electron populations 1.69992 1.05325 1.25960 1.53336 1.25092 0.95315 0.98611 1.00409 0.86325 0.78912 0.83008 0.78258 1.20957 1.21544 1.20707 1.19168 0.92680 0.84539 1.42422 0.91392 1.43974 1.36165 1.01809 1.49353 1.21310 0.98734 0.86925 0.92685 1.22300 0.86956 1.01531 0.91982 1.48060 1.32304 1.06503 1.45307 1.16853 0.80234 0.83978 0.81616 1.90827 1.64440 1.30852 1.55310 1.20994 1.01352 1.05764 0.89122 1.22439 0.90023 1.00072 0.96069 1.70333 1.30418 1.16500 1.04421 1.20199 0.84112 0.98470 0.87742 1.84809 1.76400 1.43436 1.19842 1.43922 1.18065 1.38840 1.16168 0.73524 1.22930 0.98640 0.84207 0.99357 1.21221 0.89442 0.98194 0.87765 0.93332 0.95556 0.91262 0.89560 0.91598 0.79581 0.73565 0.91678 0.91440 0.95551 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 11.19 55.49 0.62 -23.95 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 3 Si 0.91 20.38 29.59 -169.99 -5.03 15.35 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.61 9.58 -15.06 -0.14 -6.75 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.71 2.97 -171.78 -0.51 -14.22 16 10 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16 11 C 0.10 1.64 6.60 -3.60 -0.02 1.62 16 12 N -0.59 -10.01 2.94 -173.86 -0.51 -10.52 16 13 C 0.59 9.99 7.58 -12.99 -0.10 9.89 16 14 O -0.54 -10.47 16.51 5.16 0.09 -10.39 16 15 C -0.06 -0.83 5.79 -81.97 -0.47 -1.30 16 16 C 0.07 0.97 11.83 -17.50 -0.21 0.76 16 17 N -0.49 -7.10 11.22 -14.62 -0.16 -7.26 16 18 C 0.40 4.92 9.43 -89.59 -0.84 4.07 16 19 O -0.44 -4.22 13.62 -17.31 -0.24 -4.45 16 20 N -0.55 -6.60 4.81 -10.90 -0.05 -6.66 16 21 H 0.42 4.14 8.18 -40.82 -0.33 3.80 16 22 C 0.07 1.21 5.95 -3.36 -0.02 1.19 16 23 C 0.16 3.47 5.52 -3.36 -0.02 3.45 16 24 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.30 7.94 -51.93 -0.41 0.89 16 27 H 0.09 1.44 6.99 -51.93 -0.36 1.07 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.19 2.37 8.06 -52.49 -0.42 1.94 16 30 H 0.41 1.77 9.06 45.56 0.41 2.19 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.97 5.12 -51.93 -0.27 0.70 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 2.40 6.00 -51.93 -0.31 2.09 16 LS Contribution 288.14 15.07 4.34 4.34 Total: -1.00 -31.89 288.14 -6.33 -38.22 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -2.94 Total: 4.02 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -1.94 Total: 15.53 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.62 Total: -62.62 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.15 Total: -14.84 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.89 -6.33 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701321844.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.298 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds