Wall clock time and date at job start Mon Mar 30 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99994 * 2 1 4 4 H 1.48499 * 109.46893 * 270.00027 * 3 2 1 5 5 H 1.48498 * 109.46790 * 29.99778 * 3 2 1 6 6 H 1.48499 * 109.47212 * 149.99791 * 3 2 1 7 7 C 1.37878 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99461 * 180.02562 * 7 2 1 9 9 C 1.50687 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47462 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47155 * 185.65122 * 10 9 7 12 12 C 1.47386 * 111.00212 * 307.93139 * 11 10 9 13 13 C 1.50778 * 108.01470 * 285.94103 * 12 11 10 14 14 N 1.29639 * 129.26536 * 164.29669 * 13 12 11 15 15 N 1.28986 * 109.46883 * 180.17088 * 14 13 12 16 16 C 1.30920 * 109.75751 * 359.94404 * 15 14 13 17 17 N 1.34421 * 107.03109 * 359.93845 * 16 15 14 18 18 C 1.46281 * 129.77589 * 180.23010 * 17 16 15 19 19 C 1.46967 * 110.99787 * 183.65226 * 11 10 9 20 20 H 1.09001 * 109.42487 * 173.42459 * 19 11 10 21 21 C 1.50699 * 109.43067 * 293.31566 * 19 11 10 22 22 O 1.20826 * 119.99615 * 0.11403 * 21 19 11 23 23 O 1.34225 * 120.00173 * 180.10561 * 21 19 11 24 24 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47713 * 59.99599 * 9 7 2 26 26 H 1.09000 * 109.47313 * 299.99503 * 9 7 2 27 27 H 1.08998 * 109.46697 * 65.65132 * 10 9 7 28 28 H 1.08999 * 109.46720 * 305.64988 * 10 9 7 29 29 H 1.09003 * 109.75647 * 45.57175 * 12 11 10 30 30 H 1.09001 * 109.75477 * 166.31536 * 12 11 10 31 31 H 1.08001 * 126.48553 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.67335 * 43.89556 * 18 17 16 33 33 H 1.09006 * 109.76200 * 283.25186 * 18 17 16 34 34 H 0.96706 * 116.99980 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5159 -4.9299 -0.1358 12 6 0.4410 -5.0314 0.8673 13 6 1.0770 -5.3090 2.2059 14 7 0.5679 -5.2052 3.3936 15 7 1.4533 -5.5361 4.2713 16 6 2.5689 -5.8672 3.6715 17 7 2.3600 -5.7344 2.3503 18 6 3.2686 -5.9777 1.2300 19 6 2.4320 -6.0761 -0.0528 20 1 1.8553 -7.0009 -0.0394 21 6 3.3477 -6.0738 -1.2498 22 8 3.2486 -5.2057 -2.0844 23 8 4.2732 -7.0359 -1.3886 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8034 -3.6629 0.9368 28 1 2.9367 -3.5490 -0.8346 29 1 -0.1129 -4.0935 0.9101 30 1 -0.2332 -5.8464 0.6038 31 1 3.4838 -6.1871 4.1480 32 1 3.8072 -6.9116 1.3904 33 1 3.9773 -5.1538 1.1447 34 1 4.8377 -6.9923 -2.1726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702557593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:07 Heat of formation + Delta-G solvation = 16.227117 kcal Electronic energy + Delta-G solvation = -20821.179958 eV Core-core repulsion = 17563.525163 eV Total energy + Delta-G solvation = -3257.654795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.28765 -40.65053 -38.31302 -36.21597 -34.62138 -33.06963 -31.44930 -30.78280 -29.02209 -26.01989 -25.57188 -23.95758 -22.21609 -21.75545 -21.26275 -18.97651 -18.21385 -17.54891 -16.75377 -16.62123 -16.23726 -15.90010 -15.20657 -14.88346 -14.55899 -14.32633 -14.05052 -13.95696 -13.24833 -12.71932 -12.47396 -12.08232 -11.85030 -11.58956 -11.46520 -11.23310 -10.97886 -10.62956 -10.54034 -10.29876 -10.15947 -10.03987 -9.53154 -9.20982 -9.01684 -8.50087 -8.32725 -6.03655 -4.06420 1.89313 1.96143 2.37705 2.62455 3.02984 3.30876 3.36946 3.39357 3.77859 4.08236 4.33145 4.43162 4.47565 4.56210 4.74455 4.99951 5.08837 5.30078 5.33727 5.44338 5.75334 5.97332 5.99377 6.09383 6.24104 6.29180 6.74954 6.84917 6.91718 7.00131 7.58673 7.72409 7.76947 7.94678 8.33925 8.84012 8.97918 9.57380 11.07734 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.007096 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.366410 B = 3944.996266 C = 5034.276191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.027 3.973 10 C 0.046 3.954 11 N -0.509 5.509 12 C 0.133 3.867 13 C 0.158 3.842 14 N -0.281 5.281 15 N -0.302 5.302 16 C 0.154 3.846 17 N -0.475 5.475 18 C 0.080 3.920 19 C 0.082 3.918 20 H 0.128 0.872 21 C 0.484 3.516 22 O -0.467 6.467 23 O -0.521 6.521 24 H 0.262 0.738 25 H 0.032 0.968 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.217 0.783 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -16.696 -0.246 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.080 4.080 11 N -0.232 5.232 12 C 0.003 3.997 13 C -0.111 4.111 14 N -0.120 5.120 15 N -0.141 5.141 16 C -0.133 4.133 17 N -0.167 5.167 18 C -0.046 4.046 19 C -0.029 4.029 20 H 0.145 0.855 21 C 0.322 3.678 22 O -0.350 6.350 23 O -0.334 6.334 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.106 0.894 29 H 0.157 0.843 30 H 0.124 0.876 31 H 0.234 0.766 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 6.778 -16.070 0.495 17.448 hybrid contribution 2.410 0.716 -0.656 2.598 sum 9.188 -15.354 -0.161 17.894 Atomic orbital electron populations 1.69945 1.05964 1.26791 1.50096 1.24963 0.94864 0.99189 0.95085 0.86580 0.79768 0.83443 0.78132 1.20544 1.21097 1.20024 1.21033 0.92831 0.90754 1.51551 0.92929 1.19179 0.93827 0.90082 0.97933 1.22775 0.98509 0.87267 0.99418 1.62414 1.11709 1.01950 1.47105 1.21310 0.93196 1.06495 0.78685 1.25949 0.83764 1.01496 0.99929 1.74018 1.23761 1.18028 0.96229 1.74537 0.98064 1.16332 1.25211 1.26169 1.01970 1.04958 0.80247 1.46038 1.12602 1.50454 1.07653 1.22487 0.92751 1.04890 0.84435 1.21528 0.93191 0.99576 0.88632 0.85474 1.22625 0.79061 0.78816 0.87296 1.90818 1.66824 1.35509 1.41814 1.84468 1.46669 1.51750 1.50554 0.92826 0.95010 0.96193 0.96133 0.89375 0.84345 0.87564 0.76619 0.87053 0.88196 0.72670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.77 9.11 -34.45 -0.31 -15.09 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.68 4.32 -27.89 -0.12 0.56 16 10 C 0.05 0.92 4.03 -3.82 -0.02 0.90 16 11 N -0.51 -8.21 4.54 -228.66 -1.04 -9.24 16 12 C 0.13 2.10 5.94 -4.67 -0.03 2.07 16 13 C 0.16 2.64 7.28 -155.28 -1.13 1.51 16 14 N -0.28 -5.40 12.20 32.76 0.40 -5.00 16 15 N -0.30 -5.36 12.24 29.55 0.36 -4.99 16 16 C 0.15 2.06 12.86 -90.59 -1.17 0.90 16 17 N -0.48 -6.49 2.87 -115.47 -0.33 -6.82 16 18 C 0.08 0.84 5.52 -3.92 -0.02 0.82 16 19 C 0.08 0.97 2.68 -68.59 -0.18 0.78 16 20 H 0.13 1.21 8.08 -51.93 -0.42 0.79 16 21 C 0.48 5.71 7.36 36.01 0.27 5.98 16 22 O -0.47 -7.58 15.11 -18.75 -0.28 -7.86 16 23 O -0.52 -4.00 13.35 -39.24 -0.52 -4.52 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.02 0.53 6.36 -51.93 -0.33 0.20 16 27 H 0.02 0.41 5.76 -51.93 -0.30 0.11 16 28 H 0.09 1.87 6.01 -51.93 -0.31 1.55 16 29 H 0.14 2.57 5.56 -51.93 -0.29 2.28 16 30 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.22 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.12 6.89 -51.93 -0.36 0.76 16 34 H 0.41 1.59 9.10 45.56 0.41 2.00 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -36.26 285.31 -7.04 -43.29 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -2.82 Total: -0.17 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.81 Total: 0.09 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.13 Total: -51.97 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.81 Total: -12.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -36.26 -7.04 -43.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702557593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.517 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds