Wall clock time and date at job start Mon Mar 30 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99994 * 2 1 4 4 H 1.48499 * 109.46893 * 270.00027 * 3 2 1 5 5 H 1.48498 * 109.46790 * 29.99778 * 3 2 1 6 6 H 1.48499 * 109.47212 * 149.99791 * 3 2 1 7 7 C 1.37878 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99461 * 180.02562 * 7 2 1 9 9 C 1.50687 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47462 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47155 * 185.65122 * 10 9 7 12 12 C 1.47386 * 111.00212 * 307.93139 * 11 10 9 13 13 C 1.50778 * 108.01470 * 285.94103 * 12 11 10 14 14 N 1.29639 * 129.26536 * 164.29669 * 13 12 11 15 15 N 1.28986 * 109.46883 * 180.17088 * 14 13 12 16 16 C 1.30920 * 109.75751 * 359.94404 * 15 14 13 17 17 N 1.34421 * 107.03109 * 359.93845 * 16 15 14 18 18 C 1.46281 * 129.77589 * 180.23010 * 17 16 15 19 19 C 1.46967 * 110.99787 * 183.65226 * 11 10 9 20 20 H 1.09001 * 109.42487 * 173.42459 * 19 11 10 21 21 C 1.50699 * 109.43067 * 293.31566 * 19 11 10 22 22 O 1.20826 * 119.99615 * 0.11403 * 21 19 11 23 23 O 1.34225 * 120.00173 * 180.10561 * 21 19 11 24 24 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47713 * 59.99599 * 9 7 2 26 26 H 1.09000 * 109.47313 * 299.99503 * 9 7 2 27 27 H 1.08998 * 109.46697 * 65.65132 * 10 9 7 28 28 H 1.08999 * 109.46720 * 305.64988 * 10 9 7 29 29 H 1.09003 * 109.75647 * 45.57175 * 12 11 10 30 30 H 1.09001 * 109.75477 * 166.31536 * 12 11 10 31 31 H 1.08001 * 126.48553 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.67335 * 43.89556 * 18 17 16 33 33 H 1.09006 * 109.76200 * 283.25186 * 18 17 16 34 34 H 0.96706 * 116.99980 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5159 -4.9299 -0.1358 12 6 0.4410 -5.0314 0.8673 13 6 1.0770 -5.3090 2.2059 14 7 0.5679 -5.2052 3.3936 15 7 1.4533 -5.5361 4.2713 16 6 2.5689 -5.8672 3.6715 17 7 2.3600 -5.7344 2.3503 18 6 3.2686 -5.9777 1.2300 19 6 2.4320 -6.0761 -0.0528 20 1 1.8553 -7.0009 -0.0394 21 6 3.3477 -6.0738 -1.2498 22 8 3.2486 -5.2057 -2.0844 23 8 4.2732 -7.0359 -1.3886 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8034 -3.6629 0.9368 28 1 2.9367 -3.5490 -0.8346 29 1 -0.1129 -4.0935 0.9101 30 1 -0.2332 -5.8464 0.6038 31 1 3.4838 -6.1871 4.1480 32 1 3.8072 -6.9116 1.3904 33 1 3.9773 -5.1538 1.1447 34 1 4.8377 -6.9923 -2.1726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702557593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:07 Heat of formation + Delta-G solvation = -11.308821 kcal Electronic energy + Delta-G solvation = -20822.374006 eV Core-core repulsion = 17563.525163 eV Total energy + Delta-G solvation = -3258.848843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.44403 -41.63373 -39.45590 -37.08750 -36.00200 -34.95446 -32.59816 -32.39621 -30.46525 -27.62720 -26.61673 -25.55117 -23.38812 -23.02420 -22.61044 -20.22347 -19.11987 -18.86732 -18.31960 -17.76702 -17.39030 -16.99504 -16.57580 -16.36128 -15.96607 -15.71852 -15.39964 -14.99835 -14.28749 -14.20655 -14.04938 -13.45205 -13.23639 -13.08484 -12.89046 -12.64112 -12.51282 -12.48308 -12.00875 -11.68251 -11.47269 -11.41976 -11.25806 -11.16028 -10.59223 -10.26437 -9.75112 -8.23987 -6.35029 0.78894 1.04609 1.35971 1.37882 1.40512 1.47968 1.69988 1.83692 2.35915 2.68245 3.08599 3.10071 3.18307 3.63227 3.64933 3.90456 4.08353 4.14295 4.27877 4.33407 4.41795 4.51680 4.65231 4.76619 4.95891 5.06560 5.31752 5.43442 5.59241 5.68565 5.74205 5.83789 5.88281 6.18473 6.79874 6.99347 7.33607 7.65240 8.87939 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.007096 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.366410 B = 3944.996266 C = 5034.276191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.036 3.964 10 C 0.072 3.928 11 N -0.519 5.519 12 C 0.139 3.861 13 C 0.147 3.853 14 N -0.327 5.327 15 N -0.351 5.351 16 C 0.179 3.821 17 N -0.472 5.472 18 C 0.082 3.918 19 C 0.078 3.922 20 H 0.160 0.840 21 C 0.499 3.501 22 O -0.519 6.519 23 O -0.499 6.499 24 H 0.264 0.736 25 H 0.000 1.000 26 H -0.004 1.004 27 H 0.021 0.979 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.270 0.730 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.114 -18.442 -0.170 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.054 4.054 11 N -0.241 5.241 12 C 0.009 3.991 13 C -0.124 4.124 14 N -0.166 5.166 15 N -0.190 5.190 16 C -0.109 4.109 17 N -0.164 5.164 18 C -0.042 4.042 19 C -0.032 4.032 20 H 0.178 0.822 21 C 0.339 3.661 22 O -0.407 6.407 23 O -0.313 6.313 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.286 0.714 32 H 0.181 0.819 33 H 0.113 0.887 34 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 9.521 -17.863 0.564 20.250 hybrid contribution 1.625 1.139 -0.693 2.102 sum 11.147 -16.724 -0.129 20.099 Atomic orbital electron populations 1.70083 1.07661 1.27838 1.51015 1.25919 0.95780 1.03209 0.94581 0.85487 0.78620 0.78598 0.78603 1.19518 1.20656 1.18928 1.21510 0.93268 0.92304 1.51322 0.92613 1.18956 0.94128 0.91879 0.95183 1.22206 0.96711 0.87624 0.98882 1.62202 1.12583 1.01910 1.47439 1.21167 0.93319 1.05709 0.78890 1.25893 0.85263 1.01956 0.99306 1.73914 1.25613 1.19568 0.97477 1.74432 0.99637 1.18814 1.26098 1.27128 1.02164 1.01689 0.79884 1.46201 1.11849 1.49699 1.08630 1.22740 0.91703 1.07315 0.82415 1.21705 0.93344 0.98573 0.89627 0.82223 1.22491 0.78971 0.78384 0.86294 1.90823 1.68476 1.37758 1.43608 1.84408 1.45704 1.49576 1.51615 0.92675 0.98164 0.98607 0.96126 0.90273 0.88264 0.84408 0.71416 0.81857 0.88658 0.70282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.04 1.90 4.32 29.85 0.13 2.03 16 10 C 0.07 2.95 4.03 86.31 0.35 3.30 16 11 N -0.52 -16.53 4.54 -877.34 -3.98 -20.51 16 12 C 0.14 4.46 5.94 85.49 0.51 4.97 16 13 C 0.15 4.85 7.28 138.12 1.01 5.85 16 14 N -0.33 -12.74 12.20 -50.27 -0.61 -13.35 16 15 N -0.35 -12.20 12.24 -60.43 -0.74 -12.94 16 16 C 0.18 4.26 12.86 180.34 2.32 6.58 16 17 N -0.47 -11.62 2.87 -519.24 -1.49 -13.11 16 18 C 0.08 1.39 5.52 86.58 0.48 1.87 16 19 C 0.08 1.60 2.68 44.31 0.12 1.72 16 20 H 0.16 2.33 8.08 -2.39 -0.02 2.31 16 21 C 0.50 10.37 7.36 71.24 0.52 10.90 16 22 O -0.52 -16.34 15.11 21.96 0.33 -16.01 16 23 O -0.50 -5.47 13.35 -51.37 -0.69 -6.16 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.00 -0.24 6.36 -2.39 -0.02 -0.26 16 27 H 0.02 0.83 5.76 -2.39 -0.01 0.81 16 28 H 0.08 3.39 6.01 -2.39 -0.01 3.38 16 29 H 0.10 3.99 5.56 -2.39 -0.01 3.98 16 30 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.27 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.79 6.89 -2.38 -0.02 1.77 16 34 H 0.43 1.57 9.10 -74.05 -0.67 0.89 16 Total: -1.00 -84.02 285.31 1.74 -82.28 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.48 Total: 3.16 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.13 Total: 6.44 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.54 Total: -117.02 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.35 Total: -22.17 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -84.02 1.74 -82.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702557593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.969 kcal (2) G-P(sol) polarization free energy of solvation -84.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds