Wall clock time and date at job start Mon Mar 30 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48501 * 109.47037 * 240.00330 * 3 2 1 5 5 H 1.48501 * 109.46855 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47221 * 119.99989 * 3 2 1 7 7 C 1.37871 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47232 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.47389 * 111.00115 * 288.64580 * 11 10 9 13 13 C 1.50768 * 108.01597 * 185.78107 * 12 11 10 14 14 N 1.29634 * 129.27154 * 196.01169 * 13 12 11 15 15 N 1.28984 * 109.47653 * 179.87970 * 14 13 12 16 16 C 1.30924 * 109.75213 * 359.76161 * 15 14 13 17 17 N 1.34418 * 107.03370 * 0.22407 * 16 15 14 18 18 C 1.46302 * 129.75809 * 179.79526 * 17 16 15 19 19 C 1.46964 * 110.99954 * 164.36710 * 11 10 9 20 20 H 1.09004 * 109.37825 * 74.81938 * 19 11 10 21 21 C 1.50694 * 109.42979 * 314.95772 * 19 11 10 22 22 O 1.20830 * 119.99741 * 324.09518 * 21 19 11 23 23 O 1.34231 * 120.00475 * 144.09537 * 21 19 11 24 24 H 0.96996 * 120.00485 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47252 * 59.99842 * 9 7 2 26 26 H 1.09002 * 109.47111 * 299.99675 * 9 7 2 27 27 H 1.09007 * 109.46699 * 60.00407 * 10 9 7 28 28 H 1.08992 * 109.47328 * 299.99985 * 10 9 7 29 29 H 1.09006 * 109.74743 * 66.15574 * 12 11 10 30 30 H 1.09004 * 109.76317 * 305.41327 * 12 11 10 31 31 H 1.07999 * 126.48309 * 180.24753 * 16 15 14 32 32 H 1.08998 * 109.72231 * 316.02917 * 18 17 16 33 33 H 1.09002 * 109.72342 * 76.68553 * 18 17 16 34 34 H 0.96701 * 117.00313 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5110 -4.9343 -0.0012 12 6 0.8673 -5.1720 1.3032 13 6 0.2575 -6.5506 1.2780 14 7 -0.6268 -7.0713 2.0700 15 7 -0.8791 -8.2801 1.6974 16 6 -0.1631 -8.5765 0.6421 17 7 0.5755 -7.4920 0.3502 18 6 1.5465 -7.2827 -0.7239 19 6 2.3915 -6.0509 -0.3721 20 1 3.0471 -6.2883 0.4658 21 6 3.2248 -5.6575 -1.5645 22 8 2.7516 -4.9565 -2.4274 23 8 4.4928 -6.0857 -1.6680 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 0.0887 -4.4278 1.4708 30 1 1.6114 -5.1129 2.0976 31 1 -0.1656 -9.5146 0.1071 32 1 2.1907 -8.1574 -0.8129 33 1 1.0233 -7.1132 -1.6650 34 1 4.9878 -5.8070 -2.4505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702557622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:10 Heat of formation + Delta-G solvation = 12.053186 kcal Electronic energy + Delta-G solvation = -20437.970762 eV Core-core repulsion = 17180.134972 eV Total energy + Delta-G solvation = -3257.835790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -43.31104 -40.74067 -38.02173 -36.19261 -35.03470 -33.12187 -31.58046 -30.96825 -28.99987 -26.27420 -25.41884 -23.90044 -22.32588 -21.78330 -20.56868 -19.59142 -18.42994 -17.81327 -17.05445 -16.48403 -16.02811 -15.83423 -15.18783 -14.99338 -14.59189 -14.34818 -14.01408 -13.92537 -13.23813 -12.71965 -12.61172 -12.33563 -12.03038 -11.61686 -11.46088 -11.29347 -10.94102 -10.65197 -10.61482 -10.42472 -10.25764 -9.98040 -9.60028 -9.23964 -9.22001 -8.39045 -8.32502 -6.03679 -4.07427 1.78291 1.88252 2.28836 2.67448 2.89195 3.30959 3.35931 3.37173 3.61057 4.03867 4.18909 4.42972 4.46752 4.57834 4.69279 4.93571 5.09009 5.22310 5.32485 5.40313 5.66683 5.79858 5.93953 6.03019 6.11200 6.28133 6.66066 6.73183 6.88180 6.94395 7.61210 7.71858 7.77354 7.97690 8.33057 8.71577 8.98146 9.56554 11.07495 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.005693 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.921655 B = 4917.076351 C = 6009.415657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.034 3.966 10 C 0.052 3.948 11 N -0.521 5.521 12 C 0.143 3.857 13 C 0.190 3.810 14 N -0.286 5.286 15 N -0.302 5.302 16 C 0.154 3.846 17 N -0.471 5.471 18 C 0.125 3.875 19 C 0.076 3.924 20 H 0.083 0.917 21 C 0.485 3.515 22 O -0.468 6.468 23 O -0.518 6.518 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.019 0.981 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 -16.707 -2.618 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.004 4.004 10 C -0.074 4.074 11 N -0.249 5.249 12 C 0.014 3.986 13 C -0.078 4.078 14 N -0.125 5.125 15 N -0.141 5.141 16 C -0.134 4.134 17 N -0.162 5.162 18 C 0.001 3.999 19 C -0.034 4.034 20 H 0.101 0.899 21 C 0.323 3.677 22 O -0.351 6.351 23 O -0.331 6.331 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.236 0.764 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 5.791 -16.645 -1.763 17.711 hybrid contribution 2.315 1.093 -1.163 2.812 sum 8.106 -15.552 -2.926 17.780 Atomic orbital electron populations 1.69948 1.06013 1.26891 1.49969 1.24965 0.94827 0.99173 0.95102 0.86644 0.79584 0.83110 0.78566 1.20256 1.21187 1.20240 1.21039 0.92823 0.90835 1.51770 0.92901 1.19037 0.93679 0.89427 0.98246 1.22762 0.97536 0.86840 1.00225 1.62353 1.31443 1.01900 1.29164 1.20819 0.99354 0.88481 0.89967 1.24950 0.98592 0.94682 0.89611 1.74013 1.13023 1.02369 1.23135 1.74560 1.21272 1.07488 1.10824 1.26165 0.94533 0.93995 0.98661 1.46025 1.33111 1.12374 1.24721 1.21916 0.90335 0.97396 0.90263 1.21417 0.93091 0.93703 0.95223 0.89907 1.22528 0.80496 0.77586 0.87097 1.90849 1.71874 1.32395 1.39978 1.84489 1.26080 1.71951 1.50544 0.92778 0.95226 0.96241 0.94975 0.90553 0.85068 0.90845 0.76421 0.87477 0.87582 0.72533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 9 C 0.03 0.84 5.01 -27.88 -0.14 0.70 16 10 C 0.05 1.01 4.48 -3.82 -0.02 0.99 16 11 N -0.52 -8.52 4.36 -228.66 -1.00 -9.51 16 12 C 0.14 2.24 5.57 -4.67 -0.03 2.21 16 13 C 0.19 2.95 7.86 -155.28 -1.22 1.73 16 14 N -0.29 -5.02 12.20 32.76 0.40 -4.62 16 15 N -0.30 -4.82 12.24 29.55 0.36 -4.46 16 16 C 0.15 1.79 12.86 -90.59 -1.17 0.63 16 17 N -0.47 -5.84 3.12 -115.46 -0.36 -6.20 16 18 C 0.12 1.21 6.57 -3.91 -0.03 1.19 16 19 C 0.08 0.93 2.48 -68.59 -0.17 0.76 16 20 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 21 C 0.48 6.08 5.94 36.00 0.21 6.29 16 22 O -0.47 -7.79 15.93 -18.75 -0.30 -8.09 16 23 O -0.52 -4.61 13.42 -39.26 -0.53 -5.14 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.50 6.88 -51.93 -0.36 0.14 16 27 H 0.03 0.59 7.98 -51.93 -0.41 0.18 16 28 H 0.08 1.54 5.17 -51.93 -0.27 1.27 16 29 H 0.13 2.28 6.97 -51.93 -0.36 1.92 16 30 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 31 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.11 1.05 8.12 -51.93 -0.42 0.63 16 34 H 0.42 2.04 9.10 45.56 0.41 2.46 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -35.64 291.47 -7.33 -42.97 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.05 Total: -1.26 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.96 Total: 1.32 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.14 Total: -50.53 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.83 Total: -13.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.64 -7.33 -42.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702557622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.021 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds