Wall clock time and date at job start Mon Mar 30 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48501 * 109.47037 * 240.00330 * 3 2 1 5 5 H 1.48501 * 109.46855 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47221 * 119.99989 * 3 2 1 7 7 C 1.37871 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47232 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.47389 * 111.00115 * 288.64580 * 11 10 9 13 13 C 1.50768 * 108.01597 * 185.78107 * 12 11 10 14 14 N 1.29634 * 129.27154 * 196.01169 * 13 12 11 15 15 N 1.28984 * 109.47653 * 179.87970 * 14 13 12 16 16 C 1.30924 * 109.75213 * 359.76161 * 15 14 13 17 17 N 1.34418 * 107.03370 * 0.22407 * 16 15 14 18 18 C 1.46302 * 129.75809 * 179.79526 * 17 16 15 19 19 C 1.46964 * 110.99954 * 164.36710 * 11 10 9 20 20 H 1.09004 * 109.37825 * 74.81938 * 19 11 10 21 21 C 1.50694 * 109.42979 * 314.95772 * 19 11 10 22 22 O 1.20830 * 119.99741 * 324.09518 * 21 19 11 23 23 O 1.34231 * 120.00475 * 144.09537 * 21 19 11 24 24 H 0.96996 * 120.00485 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47252 * 59.99842 * 9 7 2 26 26 H 1.09002 * 109.47111 * 299.99675 * 9 7 2 27 27 H 1.09007 * 109.46699 * 60.00407 * 10 9 7 28 28 H 1.08992 * 109.47328 * 299.99985 * 10 9 7 29 29 H 1.09006 * 109.74743 * 66.15574 * 12 11 10 30 30 H 1.09004 * 109.76317 * 305.41327 * 12 11 10 31 31 H 1.07999 * 126.48309 * 180.24753 * 16 15 14 32 32 H 1.08998 * 109.72231 * 316.02917 * 18 17 16 33 33 H 1.09002 * 109.72342 * 76.68553 * 18 17 16 34 34 H 0.96701 * 117.00313 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5110 -4.9343 -0.0012 12 6 0.8673 -5.1720 1.3032 13 6 0.2575 -6.5506 1.2780 14 7 -0.6268 -7.0713 2.0700 15 7 -0.8791 -8.2801 1.6974 16 6 -0.1631 -8.5765 0.6421 17 7 0.5755 -7.4920 0.3502 18 6 1.5465 -7.2827 -0.7239 19 6 2.3915 -6.0509 -0.3721 20 1 3.0471 -6.2883 0.4658 21 6 3.2248 -5.6575 -1.5645 22 8 2.7516 -4.9565 -2.4274 23 8 4.4928 -6.0857 -1.6680 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8878 28 1 2.8713 -3.6039 -0.8922 29 1 0.0887 -4.4278 1.4708 30 1 1.6114 -5.1129 2.0976 31 1 -0.1656 -9.5146 0.1071 32 1 2.1907 -8.1574 -0.8129 33 1 1.0233 -7.1132 -1.6650 34 1 4.9878 -5.8070 -2.4505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702557622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:10 Heat of formation + Delta-G solvation = -14.362359 kcal Electronic energy + Delta-G solvation = -20439.116226 eV Core-core repulsion = 17180.134972 eV Total energy + Delta-G solvation = -3258.981254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.36820 -41.75797 -39.15339 -37.13186 -36.28756 -35.02115 -32.80526 -32.33274 -30.48831 -27.66663 -26.56425 -25.48083 -23.44892 -22.81996 -22.22282 -20.65546 -19.36361 -18.95845 -18.36100 -18.01813 -17.15964 -16.85665 -16.50110 -16.41728 -15.98126 -15.59988 -15.22319 -14.93112 -14.45751 -14.26985 -14.11795 -13.50572 -13.31891 -13.27425 -12.87751 -12.62074 -12.54737 -12.44509 -11.87767 -11.68142 -11.53982 -11.41190 -11.29205 -11.20190 -10.55514 -10.36097 -9.60431 -8.19954 -6.31849 0.77631 0.91647 1.37378 1.40484 1.43619 1.51415 1.72172 1.82475 2.35549 2.50637 3.11742 3.13590 3.14248 3.64187 3.73693 3.91141 4.08304 4.14842 4.21855 4.34199 4.35523 4.49124 4.61927 4.72678 4.95691 5.02377 5.32151 5.44139 5.52594 5.63151 5.75733 5.85049 5.91733 6.21211 6.84575 6.90542 7.37489 7.63801 8.91993 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.005693 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.921655 B = 4917.076351 C = 6009.415657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.073 3.927 11 N -0.539 5.539 12 C 0.150 3.850 13 C 0.177 3.823 14 N -0.325 5.325 15 N -0.349 5.349 16 C 0.184 3.816 17 N -0.468 5.468 18 C 0.128 3.872 19 C 0.072 3.928 20 H 0.107 0.893 21 C 0.497 3.503 22 O -0.517 6.517 23 O -0.500 6.500 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.001 1.001 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.275 0.725 32 H 0.162 0.838 33 H 0.105 0.895 34 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.098 -18.483 -3.246 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.003 3.997 10 C -0.053 4.053 11 N -0.266 5.266 12 C 0.021 3.979 13 C -0.093 4.093 14 N -0.164 5.164 15 N -0.188 5.188 16 C -0.103 4.103 17 N -0.158 5.158 18 C 0.005 3.995 19 C -0.038 4.038 20 H 0.125 0.875 21 C 0.337 3.663 22 O -0.404 6.404 23 O -0.314 6.314 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.290 0.710 32 H 0.179 0.821 33 H 0.124 0.876 34 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 8.274 -18.456 -2.393 20.367 hybrid contribution 1.585 1.533 -1.025 2.432 sum 9.859 -16.922 -3.419 19.881 Atomic orbital electron populations 1.70103 1.07899 1.27869 1.51234 1.25946 0.95680 1.03340 0.94601 0.85502 0.78259 0.78065 0.79227 1.19286 1.21039 1.18814 1.21527 0.93500 0.92056 1.51147 0.91973 1.18833 0.94070 0.91649 0.95187 1.22264 0.95834 0.86724 1.00528 1.62034 1.32666 1.02222 1.29715 1.20574 0.98881 0.88293 0.90194 1.24702 0.98949 0.94919 0.90737 1.73917 1.14130 1.03569 1.24785 1.74471 1.23635 1.07223 1.13444 1.27166 0.91605 0.94821 0.96745 1.46176 1.33427 1.11758 1.24484 1.22209 0.90197 0.98112 0.88958 1.21587 0.93440 0.92821 0.95974 0.87543 1.22490 0.81172 0.76414 0.86196 1.90851 1.73091 1.34782 1.41690 1.84441 1.24345 1.71025 1.51604 0.92777 0.99418 0.98254 0.93775 0.90865 0.88274 0.89392 0.70979 0.82053 0.87645 0.70230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.44 0.28 -57.03 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.54 -30.60 9.11 25.60 0.23 -30.36 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 2.11 5.01 29.85 0.15 2.26 16 10 C 0.07 2.86 4.48 86.30 0.39 3.25 16 11 N -0.54 -17.56 4.36 -877.35 -3.82 -21.38 16 12 C 0.15 4.80 5.57 85.48 0.48 5.27 16 13 C 0.18 5.42 7.86 138.11 1.09 6.51 16 14 N -0.32 -11.51 12.20 -50.27 -0.61 -12.12 16 15 N -0.35 -10.77 12.24 -60.43 -0.74 -11.51 16 16 C 0.18 3.69 12.86 180.34 2.32 6.01 16 17 N -0.47 -10.34 3.12 -519.21 -1.62 -11.96 16 18 C 0.13 1.99 6.57 86.57 0.57 2.56 16 19 C 0.07 1.57 2.48 44.31 0.11 1.68 16 20 H 0.11 1.91 8.07 -2.39 -0.02 1.89 16 21 C 0.50 11.27 5.94 71.23 0.42 11.69 16 22 O -0.52 -16.79 15.93 21.95 0.35 -16.44 16 23 O -0.50 -7.06 13.42 -51.43 -0.69 -7.75 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.00 -0.05 6.88 -2.39 -0.02 -0.06 16 27 H 0.04 1.61 7.98 -2.38 -0.02 1.59 16 28 H 0.07 2.94 5.17 -2.39 -0.01 2.93 16 29 H 0.10 3.76 6.97 -2.38 -0.02 3.74 16 30 H 0.09 2.48 8.03 -2.39 -0.02 2.46 16 31 H 0.27 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 1.76 8.12 -2.39 -0.02 1.74 16 34 H 0.43 2.77 9.10 -74.06 -0.67 2.10 16 Total: -1.00 -82.21 291.47 1.86 -80.35 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 0.47 Total: 2.29 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.22 Total: 9.48 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -6.51 Total: -114.00 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.34 Total: -24.20 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -82.21 1.86 -80.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702557622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.986 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds