Wall clock time and date at job start Mon Mar 30 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35730 * 117.00354 * 2 1 4 4 C 1.41856 * 126.79153 * 180.23241 * 3 2 1 5 5 C 1.36664 * 103.81419 * 180.11780 * 4 3 2 6 6 C 1.47534 * 126.87776 * 179.97438 * 5 4 3 7 7 O 1.21581 * 120.00584 * 359.71541 * 6 5 4 8 8 N 1.34783 * 119.99860 * 179.71118 * 6 5 4 9 9 C 1.47420 * 125.64937 * 359.97438 * 8 6 5 10 10 C 1.54909 * 104.83453 * 155.90945 * 9 8 6 11 11 C 1.55160 * 101.57961 * 37.01034 * 10 9 8 12 12 H 1.09009 * 110.71539 * 83.03809 * 11 10 9 13 13 C 1.50695 * 110.71983 * 206.13388 * 11 10 9 14 14 H 1.07995 * 120.00496 * 357.56247 * 13 11 10 15 15 C 1.37880 * 119.99572 * 177.56180 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.47313 * 125.61378 * 180.20559 * 8 6 5 22 22 O 1.34659 * 106.24015 * 359.66855 * 5 4 3 23 23 N 1.20883 * 111.63470 * 0.22615 * 22 5 4 24 24 H 1.09003 * 109.47366 * 300.00363 * 1 2 3 25 25 H 1.09000 * 109.47108 * 60.00130 * 1 2 3 26 26 H 1.08994 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.07997 * 128.09243 * 0.03042 * 4 3 2 28 28 H 1.09004 * 110.36585 * 37.07330 * 9 8 6 29 29 H 1.09000 * 110.36997 * 274.75461 * 9 8 6 30 30 H 1.09003 * 111.00423 * 278.94229 * 10 9 8 31 31 H 1.08996 * 111.03772 * 155.09777 * 10 9 8 32 32 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 33 33 H 1.08999 * 110.06653 * 61.67797 * 21 8 6 34 34 H 1.08995 * 109.85233 * 300.41778 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0046 5 6 3.5391 2.8137 0.0003 6 6 4.7785 3.6141 -0.0010 7 8 5.8604 3.0594 -0.0017 8 7 4.7114 4.9602 -0.0015 9 6 3.4722 5.7587 -0.0014 10 6 3.8795 7.1229 0.6092 11 6 5.3034 7.3138 0.0231 12 1 5.2535 7.7296 -0.9834 13 6 6.1359 8.1928 0.9204 14 1 5.7002 8.6232 1.8099 15 6 7.4539 8.4476 0.6057 16 7 7.9843 7.9239 -0.4778 17 14 8.4861 9.5366 1.7183 18 1 8.5506 8.9378 3.0758 19 1 7.8699 10.8852 1.8011 20 1 9.8585 9.6522 1.1631 21 6 5.8648 5.8766 -0.0071 22 8 2.2759 3.2802 -0.0004 23 7 1.4685 2.3805 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.2442 0.7262 -0.0093 28 1 2.7119 5.2791 0.6151 29 1 3.1070 5.8927 -1.0196 30 1 3.9088 7.0707 1.6976 31 1 3.2103 7.9161 0.2760 32 1 7.4484 7.3581 -1.0554 33 1 6.4558 5.7284 -0.9108 34 1 6.4814 5.7010 0.8744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704708586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:55 Heat of formation + Delta-G solvation = -3.095126 kcal Electronic energy + Delta-G solvation = -20020.203182 eV Core-core repulsion = 16729.417761 eV Total energy + Delta-G solvation = -3290.785421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.04924 -39.56322 -39.06893 -37.12682 -33.51972 -33.26679 -31.95856 -30.51416 -28.08480 -27.90570 -25.46409 -23.63757 -23.42694 -22.02781 -20.59680 -19.85935 -18.07989 -18.03408 -17.05054 -16.89613 -16.01788 -15.77981 -15.72383 -15.28823 -14.74559 -13.92119 -13.80387 -13.77053 -13.22207 -12.53209 -12.50413 -12.40301 -12.14932 -11.93267 -11.54297 -11.43022 -10.89077 -10.80464 -10.19698 -10.11355 -10.05859 -9.92069 -9.70951 -9.50686 -8.70776 -8.50453 -8.23286 -6.45814 -4.21320 0.75129 1.97250 2.45838 2.61166 3.16288 3.38892 3.41891 3.44604 3.60998 3.96212 4.46333 4.59776 4.75031 4.80701 4.84399 5.08866 5.17100 5.23375 5.27974 5.54821 5.59095 5.72392 5.99967 6.17700 6.46400 6.57938 6.62371 6.65970 6.69159 7.00012 7.36750 7.73700 7.90022 8.03054 8.22976 8.30714 8.73983 9.50575 10.91664 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.048979 B = 0.004085 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.538790 B = 6852.910813 C = 7188.357473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.204 3.796 4 C -0.165 4.165 5 C -0.038 4.038 6 C 0.602 3.398 7 O -0.517 6.517 8 N -0.594 5.594 9 C 0.091 3.909 10 C -0.119 4.119 11 C 0.027 3.973 12 H 0.035 0.965 13 C -0.597 4.597 14 H 0.056 0.944 15 C 0.021 3.979 16 N -0.904 5.904 17 Si 1.069 2.931 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.282 1.282 21 C 0.111 3.889 22 O 0.117 5.883 23 N -0.397 5.397 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.189 0.811 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.271 0.729 33 H 0.060 0.940 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -10.753 0.566 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.007 3.993 4 C -0.187 4.187 5 C -0.105 4.105 6 C 0.386 3.614 7 O -0.395 6.395 8 N -0.325 5.325 9 C -0.031 4.031 10 C -0.157 4.157 11 C 0.008 3.992 12 H 0.053 0.947 13 C -0.635 4.635 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.539 5.539 17 Si 0.897 3.103 18 H -0.213 1.213 19 H -0.213 1.213 20 H -0.207 1.207 21 C -0.010 4.010 22 O 0.052 5.948 23 N -0.122 5.122 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.207 0.793 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.763 -10.351 0.738 16.449 hybrid contribution -1.269 -1.199 -0.228 1.761 sum -14.032 -11.550 0.510 18.181 Atomic orbital electron populations 1.23082 0.76739 1.04126 1.02454 1.86209 1.22640 1.20508 1.89461 1.21865 0.90631 0.85787 1.01049 1.22140 0.94336 0.94939 1.07332 1.24297 0.86958 0.93785 1.05411 1.16184 0.84924 0.81075 0.79219 1.90871 1.26410 1.70554 1.51643 1.48869 1.11087 1.03892 1.68651 1.22589 0.86172 0.93284 1.01096 1.22762 0.98817 0.93467 1.00632 1.19938 0.91379 0.90402 0.97468 0.94656 1.21870 0.98163 1.32550 1.10899 0.92590 1.25900 0.96276 0.97995 0.98234 1.70842 1.39858 1.30659 1.12582 0.83526 0.76173 0.75588 0.75014 1.21331 1.21342 1.20708 1.22996 0.86523 0.89734 1.01700 1.85054 1.12014 1.29290 1.68418 1.73970 1.16362 0.96707 1.25153 0.92160 0.92167 0.87585 0.79343 0.90763 0.91325 0.91117 0.90952 0.91730 0.92194 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.33 10.57 -18.90 -0.20 -3.53 16 3 C 0.20 2.78 8.00 -16.72 -0.13 2.65 16 4 C -0.16 -2.31 10.97 -38.77 -0.43 -2.73 16 5 C -0.04 -0.60 7.06 -36.36 -0.26 -0.86 16 6 C 0.60 11.35 7.85 -12.47 -0.10 11.26 16 7 O -0.52 -11.23 17.24 5.29 0.09 -11.14 16 8 N -0.59 -11.43 3.33 -171.51 -0.57 -12.01 16 9 C 0.09 1.49 6.20 -2.53 -0.02 1.47 16 10 C -0.12 -2.17 6.50 -24.58 -0.16 -2.33 16 11 C 0.03 0.62 2.46 -89.94 -0.22 0.40 16 12 H 0.04 0.85 8.00 -51.92 -0.42 0.43 16 13 C -0.60 -15.53 8.38 -34.44 -0.29 -15.82 16 14 H 0.06 1.44 7.77 -52.49 -0.41 1.03 16 15 C 0.02 0.58 5.34 -17.82 -0.10 0.48 16 16 N -0.90 -25.96 13.45 55.43 0.75 -25.21 16 17 Si 1.07 24.06 29.90 -169.99 -5.08 18.98 16 18 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.11 2.52 5.48 -2.90 -0.02 2.50 16 22 O 0.12 1.73 8.56 15.50 0.13 1.86 16 23 N -0.40 -5.68 11.50 30.47 0.35 -5.32 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.07 1.08 6.28 -51.93 -0.33 0.75 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.27 7.66 5.63 -40.82 -0.23 7.43 16 33 H 0.06 1.43 7.01 -51.93 -0.36 1.07 16 34 H 0.07 1.85 7.81 -51.93 -0.41 1.44 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -30.03 294.16 -4.63 -34.66 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.90 Total: -1.07 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.63 Total: -1.64 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.52 Total: -42.54 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.02 Total: -12.81 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.08 Total: 18.98 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.03 -4.63 -34.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704708586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.560 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds