Wall clock time and date at job start Mon Mar 30 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35730 * 117.00354 * 2 1 4 4 C 1.41856 * 126.79153 * 180.23241 * 3 2 1 5 5 C 1.36664 * 103.81419 * 180.11780 * 4 3 2 6 6 C 1.47534 * 126.87776 * 179.97438 * 5 4 3 7 7 O 1.21581 * 120.00584 * 359.71541 * 6 5 4 8 8 N 1.34783 * 119.99860 * 179.71118 * 6 5 4 9 9 C 1.47420 * 125.64937 * 359.97438 * 8 6 5 10 10 C 1.54909 * 104.83453 * 155.90945 * 9 8 6 11 11 C 1.55160 * 101.57961 * 37.01034 * 10 9 8 12 12 H 1.09009 * 110.71539 * 83.03809 * 11 10 9 13 13 C 1.50695 * 110.71983 * 206.13388 * 11 10 9 14 14 H 1.07995 * 120.00496 * 357.56247 * 13 11 10 15 15 C 1.37880 * 119.99572 * 177.56180 * 13 11 10 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99951 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 59.99744 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99924 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.47313 * 125.61378 * 180.20559 * 8 6 5 22 22 O 1.34659 * 106.24015 * 359.66855 * 5 4 3 23 23 N 1.20883 * 111.63470 * 0.22615 * 22 5 4 24 24 H 1.09003 * 109.47366 * 300.00363 * 1 2 3 25 25 H 1.09000 * 109.47108 * 60.00130 * 1 2 3 26 26 H 1.08994 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.07997 * 128.09243 * 0.03042 * 4 3 2 28 28 H 1.09004 * 110.36585 * 37.07330 * 9 8 6 29 29 H 1.09000 * 110.36997 * 274.75461 * 9 8 6 30 30 H 1.09003 * 111.00423 * 278.94229 * 10 9 8 31 31 H 1.08996 * 111.03772 * 155.09777 * 10 9 8 32 32 H 0.97006 * 119.99995 * 359.97438 * 16 15 13 33 33 H 1.08999 * 110.06653 * 61.67797 * 21 8 6 34 34 H 1.08995 * 109.85233 * 300.41778 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 -0.0046 5 6 3.5391 2.8137 0.0003 6 6 4.7785 3.6141 -0.0010 7 8 5.8604 3.0594 -0.0017 8 7 4.7114 4.9602 -0.0015 9 6 3.4722 5.7587 -0.0014 10 6 3.8795 7.1229 0.6092 11 6 5.3034 7.3138 0.0231 12 1 5.2535 7.7296 -0.9834 13 6 6.1359 8.1928 0.9204 14 1 5.7002 8.6232 1.8099 15 6 7.4539 8.4476 0.6057 16 7 7.9843 7.9239 -0.4778 17 14 8.4861 9.5366 1.7183 18 1 8.5506 8.9378 3.0758 19 1 7.8699 10.8852 1.8011 20 1 9.8585 9.6522 1.1631 21 6 5.8648 5.8766 -0.0071 22 8 2.2759 3.2802 -0.0004 23 7 1.4685 2.3805 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.2442 0.7262 -0.0093 28 1 2.7119 5.2791 0.6151 29 1 3.1070 5.8927 -1.0196 30 1 3.9088 7.0707 1.6976 31 1 3.2103 7.9161 0.2760 32 1 7.4484 7.3581 -1.0554 33 1 6.4558 5.7284 -0.9108 34 1 6.4814 5.7010 0.8744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704708586.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:55 Heat of formation + Delta-G solvation = -24.418820 kcal Electronic energy + Delta-G solvation = -20021.127847 eV Core-core repulsion = 16729.417761 eV Total energy + Delta-G solvation = -3291.710086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.17192 -41.12194 -39.98186 -38.76300 -35.35291 -34.41752 -33.29541 -32.09353 -29.74006 -28.64864 -27.22794 -25.24524 -24.56610 -23.38110 -22.01552 -21.42085 -19.53379 -19.17880 -18.77454 -18.03566 -17.34197 -17.32855 -16.76033 -16.51380 -15.81128 -15.62193 -15.53638 -15.01520 -14.84360 -14.18248 -13.94316 -13.75104 -13.19355 -13.17834 -12.93890 -12.64948 -12.57800 -12.49840 -11.94278 -11.85172 -11.60479 -11.42877 -11.11400 -10.64500 -10.54297 -10.52272 -9.85455 -8.59004 -6.34740 -0.49183 0.88045 1.26155 1.50417 1.58214 1.64910 1.72460 1.83502 2.07839 2.60438 2.88096 3.18969 3.42818 3.58534 3.79314 3.92245 4.10258 4.24088 4.25820 4.27301 4.36702 4.49756 4.60409 4.62120 4.68755 4.90966 5.03050 5.08376 5.28397 5.53944 5.78307 6.04694 6.17416 6.28294 6.57769 6.64480 6.85312 7.45309 8.79382 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.048979 B = 0.004085 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.538790 B = 6852.910813 C = 7188.357473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.287 6.287 3 C 0.209 3.791 4 C -0.150 4.150 5 C -0.051 4.051 6 C 0.605 3.395 7 O -0.554 6.554 8 N -0.599 5.599 9 C 0.097 3.903 10 C -0.109 4.109 11 C 0.017 3.983 12 H 0.020 0.980 13 C -0.604 4.604 14 H 0.058 0.942 15 C -0.029 4.029 16 N -0.936 5.936 17 Si 1.112 2.888 18 H -0.274 1.274 19 H -0.266 1.266 20 H -0.289 1.289 21 C 0.129 3.871 22 O 0.117 5.883 23 N -0.396 5.396 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.139 0.861 27 H 0.204 0.796 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.261 0.739 33 H 0.036 0.964 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 -11.442 1.251 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.193 6.193 3 C 0.011 3.989 4 C -0.173 4.173 5 C -0.116 4.116 6 C 0.392 3.608 7 O -0.434 6.434 8 N -0.330 5.330 9 C -0.025 4.025 10 C -0.147 4.147 11 C -0.002 4.002 12 H 0.039 0.961 13 C -0.642 4.642 14 H 0.076 0.924 15 C -0.228 4.228 16 N -0.573 5.573 17 Si 0.934 3.066 18 H -0.199 1.199 19 H -0.191 1.191 20 H -0.215 1.215 21 C 0.007 3.993 22 O 0.053 5.947 23 N -0.121 5.121 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.221 0.779 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.098 -11.047 1.429 18.762 hybrid contribution -0.688 -1.093 -0.450 1.367 sum -15.785 -12.140 0.979 19.938 Atomic orbital electron populations 1.23422 0.74625 1.06451 1.02640 1.86237 1.24687 1.19355 1.89050 1.21903 0.90479 0.86231 1.00241 1.22389 0.95213 0.94489 1.05169 1.23586 0.86368 0.93774 1.07902 1.16431 0.85647 0.80788 0.77980 1.90845 1.28238 1.71239 1.53064 1.48846 1.11003 1.04162 1.68941 1.22740 0.85246 0.91772 1.02706 1.22708 0.96133 0.95501 1.00361 1.19903 0.94133 0.89665 0.96496 0.96145 1.22264 0.98511 1.32344 1.11063 0.92420 1.27212 0.98131 0.98807 0.98690 1.70942 1.40176 1.32245 1.13911 0.82981 0.74510 0.75183 0.73909 1.19948 1.19148 1.21526 1.22421 0.87211 0.90752 0.98926 1.85038 1.11418 1.29481 1.68802 1.73952 1.16021 0.96973 1.25202 0.91953 0.91948 0.84322 0.77871 0.88181 0.89316 0.91378 0.88468 0.92813 0.94554 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.51 16 2 O -0.29 -5.96 10.57 -90.53 -0.96 -6.92 16 3 C 0.21 5.16 8.00 85.78 0.69 5.84 16 4 C -0.15 -3.91 10.97 22.80 0.25 -3.66 16 5 C -0.05 -1.51 7.06 24.36 0.17 -1.34 16 6 C 0.61 22.78 7.85 86.69 0.68 23.46 16 7 O -0.55 -24.55 17.24 -3.97 -0.07 -24.61 16 8 N -0.60 -23.03 3.33 -814.81 -2.72 -25.74 16 9 C 0.10 2.96 6.20 86.86 0.54 3.50 16 10 C -0.11 -3.82 6.50 31.99 0.21 -3.61 16 11 C 0.02 0.80 2.46 -10.35 -0.03 0.77 16 12 H 0.02 1.01 8.00 -2.38 -0.02 0.99 16 13 C -0.60 -31.72 8.38 25.60 0.21 -31.50 16 14 H 0.06 2.94 7.77 -2.91 -0.02 2.92 16 15 C -0.03 -1.60 5.34 84.66 0.45 -1.15 16 16 N -0.94 -55.47 13.45 21.45 0.29 -55.18 16 17 Si 1.11 48.59 29.90 68.60 2.05 50.64 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 21 C 0.13 6.07 5.48 86.67 0.48 6.55 16 22 O 0.12 3.20 8.56 65.66 0.56 3.76 16 23 N -0.40 -10.27 11.50 -172.00 -1.98 -12.25 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.20 4.59 8.06 -2.91 -0.02 4.56 16 28 H 0.10 2.60 6.28 -2.38 -0.01 2.59 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 31 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.26 15.48 5.63 -92.70 -0.52 14.96 16 33 H 0.04 1.84 7.01 -2.39 -0.02 1.83 16 34 H 0.04 2.12 7.81 -2.39 -0.02 2.10 16 Total: -1.00 -66.04 294.16 3.42 -62.62 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.37 Total: 7.32 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 4.87 Total: 0.37 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.41 Total: -93.18 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.46 Total: -27.78 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Total: -66.04 3.42 -62.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704708586.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.202 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds