Wall clock time and date at job start Mon Mar 30 2020 04:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35735 * 116.99762 * 2 1 4 4 C 1.41850 * 126.78377 * 180.28101 * 3 2 1 5 5 C 1.36671 * 103.81141 * 180.14203 * 4 3 2 6 6 C 1.47538 * 126.88097 * 179.91236 * 5 4 3 7 7 O 1.21584 * 120.00127 * 359.70305 * 6 5 4 8 8 N 1.34774 * 120.00115 * 179.70898 * 6 5 4 9 9 C 1.47290 * 125.79121 * 359.97438 * 8 6 5 10 10 C 1.54325 * 107.30599 * 178.92556 * 9 8 6 11 11 C 1.55154 * 102.94303 * 337.81911 * 10 9 8 12 12 H 1.09008 * 111.00345 * 277.42446 * 11 10 9 13 13 C 1.50693 * 111.03939 * 153.59058 * 11 10 9 14 14 H 1.08004 * 120.00401 * 6.33015 * 13 11 10 15 15 C 1.37876 * 120.00383 * 186.33190 * 13 11 10 16 16 N 1.31512 * 119.99646 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00223 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47219 * 90.00069 * 17 15 13 19 19 H 1.48500 * 109.47001 * 209.99842 * 17 15 13 20 20 H 1.48498 * 109.46999 * 329.99572 * 17 15 13 21 21 C 1.47425 * 125.65138 * 179.97438 * 8 6 5 22 22 O 1.34660 * 106.23582 * 359.64242 * 5 4 3 23 23 N 1.20876 * 111.63466 * 0.24608 * 22 5 4 24 24 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47399 * 300.00307 * 1 2 3 26 26 H 1.09000 * 109.47372 * 60.00887 * 1 2 3 27 27 H 1.07999 * 128.10118 * 0.04355 * 4 3 2 28 28 H 1.09004 * 109.85762 * 59.50172 * 9 8 6 29 29 H 1.08999 * 109.87327 * 298.36024 * 9 8 6 30 30 H 1.09002 * 110.72180 * 219.45147 * 10 9 8 31 31 H 1.08997 * 110.72163 * 96.18354 * 10 9 8 32 32 H 0.97010 * 119.99834 * 180.02562 * 16 15 13 33 33 H 1.09002 * 110.36696 * 85.25946 * 21 8 6 34 34 H 1.08995 * 110.36608 * 323.04783 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4505 -0.0056 5 6 3.5389 2.8139 0.0003 6 6 4.7783 3.6143 -0.0001 7 8 5.8602 3.0596 -0.0007 8 7 4.7112 4.9604 0.0004 9 6 3.4750 5.7612 0.0007 10 6 3.8907 7.2471 0.0288 11 6 5.3269 7.1953 0.6135 12 1 5.3039 7.1389 1.7019 13 6 6.1412 8.3770 0.1539 14 1 5.6727 9.1680 -0.4130 15 6 7.4843 8.4487 0.4570 16 7 8.0547 7.4858 1.1477 17 14 8.4935 9.9140 -0.1121 18 1 8.4565 10.9742 0.9271 19 1 9.8988 9.4899 -0.3368 20 1 7.9274 10.4427 -1.3791 21 6 5.8649 5.8782 0.0006 22 8 2.2756 3.2802 0.0005 23 7 1.4684 2.3805 0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 4.2441 0.7263 -0.0113 28 1 2.8814 5.5256 0.8840 29 1 2.8992 5.5543 -0.9014 30 1 3.2299 7.8203 0.6792 31 1 3.8991 7.6644 -0.9782 32 1 8.9996 7.5363 1.3613 33 1 6.2142 6.0486 -1.0178 34 1 6.6701 5.4752 0.6147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704708587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:59 Heat of formation + Delta-G solvation = -0.827504 kcal Electronic energy + Delta-G solvation = -19965.953411 eV Core-core repulsion = 16675.266321 eV Total energy + Delta-G solvation = -3290.687090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.96932 -39.39344 -39.00705 -36.90385 -33.29100 -33.09982 -31.89723 -30.51901 -28.14109 -27.86285 -25.55803 -23.66659 -23.35320 -21.93170 -20.30857 -19.73362 -17.97496 -17.80668 -16.92810 -16.59682 -15.89494 -15.71556 -15.57903 -15.07046 -14.62896 -14.47298 -13.81903 -13.58125 -12.74848 -12.55116 -12.44766 -12.09962 -11.99783 -11.91285 -11.48454 -11.46825 -10.98481 -10.64925 -10.60453 -9.94083 -9.90582 -9.83255 -9.44510 -9.37719 -9.10322 -8.57558 -8.05276 -6.14371 -4.19994 0.84438 2.04261 2.52187 2.72653 3.26027 3.28977 3.34142 3.36109 3.56516 4.03812 4.35546 4.68469 4.84666 4.87425 4.88547 5.16656 5.19538 5.21846 5.44724 5.63153 5.64817 5.87203 6.17238 6.41961 6.68716 6.74797 6.75790 6.85159 6.88934 7.35889 7.62282 7.85010 7.91502 8.00575 8.21365 8.38096 8.82970 9.46466 10.94919 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.004049 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.750722 B = 6913.166742 C = 7333.029632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.203 3.797 4 C -0.168 4.168 5 C -0.036 4.036 6 C 0.601 3.399 7 O -0.519 6.519 8 N -0.595 5.595 9 C 0.096 3.904 10 C -0.128 4.128 11 C 0.046 3.954 12 H 0.041 0.959 13 C -0.519 4.519 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.117 3.883 22 O 0.118 5.882 23 N -0.398 5.398 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.189 0.811 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.034 -9.991 -2.139 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.189 6.189 3 C 0.005 3.995 4 C -0.190 4.190 5 C -0.103 4.103 6 C 0.385 3.615 7 O -0.396 6.396 8 N -0.327 5.327 9 C -0.027 4.027 10 C -0.166 4.166 11 C 0.027 3.973 12 H 0.059 0.941 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.002 4.002 22 O 0.053 5.947 23 N -0.123 5.123 24 H 0.124 0.876 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.206 0.794 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.417 -10.296 -2.067 17.038 hybrid contribution 0.901 0.225 -0.270 0.967 sum -12.516 -10.071 -2.337 16.234 Atomic orbital electron populations 1.23072 0.76820 1.04063 1.02431 1.86207 1.22579 1.20573 1.89508 1.21870 0.90665 0.85771 1.01147 1.22135 0.94268 0.95005 1.07642 1.24411 0.87025 0.93810 1.05033 1.16139 0.84786 0.81185 0.79367 1.90868 1.26352 1.70516 1.51885 1.48972 1.11525 1.03906 1.68253 1.22270 0.86205 0.93306 1.00935 1.22744 1.00036 0.91830 1.01950 1.19869 0.89152 0.92101 0.96193 0.94104 1.20962 0.93797 1.05066 1.35904 0.91886 1.25050 0.98023 0.96235 0.94595 1.69931 1.12111 1.32196 1.37996 0.86525 0.79431 0.82536 0.79136 1.20591 1.21154 1.19784 1.22930 0.86823 0.89054 1.01423 1.85028 1.12036 1.29321 1.68315 1.73963 1.16354 0.96680 1.25264 0.87646 0.92181 0.92200 0.79406 0.91694 0.91888 0.91354 0.91205 0.92552 0.92055 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.73 101.05 1.08 1.34 16 2 O -0.28 -3.42 10.57 -18.91 -0.20 -3.62 16 3 C 0.20 2.83 8.00 -16.72 -0.13 2.69 16 4 C -0.17 -2.41 10.97 -38.77 -0.43 -2.83 16 5 C -0.04 -0.58 7.08 -36.36 -0.26 -0.84 16 6 C 0.60 11.58 7.85 -12.47 -0.10 11.48 16 7 O -0.52 -11.48 17.17 5.29 0.09 -11.39 16 8 N -0.60 -11.67 3.34 -171.53 -0.57 -12.24 16 9 C 0.10 1.58 5.59 -2.92 -0.02 1.57 16 10 C -0.13 -2.31 6.39 -24.90 -0.16 -2.47 16 11 C 0.05 1.06 2.96 -89.63 -0.27 0.80 16 12 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 13 C -0.52 -13.20 8.55 -34.44 -0.29 -13.50 16 14 H 0.06 1.56 7.79 -52.48 -0.41 1.15 16 15 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 16 N -0.89 -24.41 12.06 55.43 0.67 -23.74 16 17 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.12 2.70 5.65 -2.53 -0.01 2.68 16 22 O 0.12 1.79 9.03 15.50 0.14 1.93 16 23 N -0.40 -5.82 11.50 30.47 0.35 -5.47 16 24 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.06 0.99 7.73 -51.93 -0.40 0.59 16 29 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 1.46 8.03 -51.93 -0.42 1.05 16 34 H 0.09 2.33 7.32 -51.93 -0.38 1.95 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -28.85 297.45 -4.84 -33.69 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.10 Total: -1.46 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.67 Total: 2.51 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.45 Total: -41.45 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.03 Total: -13.07 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.85 -4.84 -33.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704708587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.860 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds