Wall clock time and date at job start Mon Mar 30 2020 04:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35735 * 116.99762 * 2 1 4 4 C 1.41850 * 126.78377 * 180.28101 * 3 2 1 5 5 C 1.36671 * 103.81141 * 180.14203 * 4 3 2 6 6 C 1.47538 * 126.88097 * 179.91236 * 5 4 3 7 7 O 1.21584 * 120.00127 * 359.70305 * 6 5 4 8 8 N 1.34774 * 120.00115 * 179.70898 * 6 5 4 9 9 C 1.47290 * 125.79121 * 359.97438 * 8 6 5 10 10 C 1.54325 * 107.30599 * 178.92556 * 9 8 6 11 11 C 1.55154 * 102.94303 * 337.81911 * 10 9 8 12 12 H 1.09008 * 111.00345 * 277.42446 * 11 10 9 13 13 C 1.50693 * 111.03939 * 153.59058 * 11 10 9 14 14 H 1.08004 * 120.00401 * 6.33015 * 13 11 10 15 15 C 1.37876 * 120.00383 * 186.33190 * 13 11 10 16 16 N 1.31512 * 119.99646 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00223 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47219 * 90.00069 * 17 15 13 19 19 H 1.48500 * 109.47001 * 209.99842 * 17 15 13 20 20 H 1.48498 * 109.46999 * 329.99572 * 17 15 13 21 21 C 1.47425 * 125.65138 * 179.97438 * 8 6 5 22 22 O 1.34660 * 106.23582 * 359.64242 * 5 4 3 23 23 N 1.20876 * 111.63466 * 0.24608 * 22 5 4 24 24 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47399 * 300.00307 * 1 2 3 26 26 H 1.09000 * 109.47372 * 60.00887 * 1 2 3 27 27 H 1.07999 * 128.10118 * 0.04355 * 4 3 2 28 28 H 1.09004 * 109.85762 * 59.50172 * 9 8 6 29 29 H 1.08999 * 109.87327 * 298.36024 * 9 8 6 30 30 H 1.09002 * 110.72180 * 219.45147 * 10 9 8 31 31 H 1.08997 * 110.72163 * 96.18354 * 10 9 8 32 32 H 0.97010 * 119.99834 * 180.02562 * 16 15 13 33 33 H 1.09002 * 110.36696 * 85.25946 * 21 8 6 34 34 H 1.08995 * 110.36608 * 323.04783 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4505 -0.0056 5 6 3.5389 2.8139 0.0003 6 6 4.7783 3.6143 -0.0001 7 8 5.8602 3.0596 -0.0007 8 7 4.7112 4.9604 0.0004 9 6 3.4750 5.7612 0.0007 10 6 3.8907 7.2471 0.0288 11 6 5.3269 7.1953 0.6135 12 1 5.3039 7.1389 1.7019 13 6 6.1412 8.3770 0.1539 14 1 5.6727 9.1680 -0.4130 15 6 7.4843 8.4487 0.4570 16 7 8.0547 7.4858 1.1477 17 14 8.4935 9.9140 -0.1121 18 1 8.4565 10.9742 0.9271 19 1 9.8988 9.4899 -0.3368 20 1 7.9274 10.4427 -1.3791 21 6 5.8649 5.8782 0.0006 22 8 2.2756 3.2802 0.0005 23 7 1.4684 2.3805 0.0004 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 4.2441 0.7263 -0.0113 28 1 2.8814 5.5256 0.8840 29 1 2.8992 5.5543 -0.9014 30 1 3.2299 7.8203 0.6792 31 1 3.8991 7.6644 -0.9782 32 1 8.9996 7.5363 1.3613 33 1 6.2142 6.0486 -1.0178 34 1 6.6701 5.4752 0.6147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704708587.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:58 Heat of formation + Delta-G solvation = -21.105905 kcal Electronic energy + Delta-G solvation = -19966.832749 eV Core-core repulsion = 16675.266321 eV Total energy + Delta-G solvation = -3291.566427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -46.11669 -40.96005 -39.94723 -38.53590 -35.02198 -34.36124 -33.27978 -32.09171 -29.79001 -28.62197 -27.32062 -25.23612 -24.50162 -23.28018 -21.67545 -21.35327 -19.22815 -19.12602 -18.48602 -17.96765 -17.27073 -17.07580 -16.69988 -16.47662 -16.26264 -15.75369 -15.30653 -14.81744 -14.32506 -14.28329 -13.71700 -13.59939 -13.18778 -13.16516 -12.90909 -12.79091 -12.59547 -12.44877 -12.32579 -11.56932 -11.49614 -11.13886 -11.05564 -11.00579 -10.56119 -10.48295 -9.67607 -8.14430 -6.26083 -0.42277 0.92552 1.36163 1.46724 1.48123 1.55685 1.57628 1.82424 2.18143 2.46002 2.93528 3.18662 3.52680 3.64257 3.96436 3.97897 4.26215 4.29017 4.29553 4.36744 4.54907 4.64193 4.65819 4.75788 4.99104 5.11725 5.23038 5.25965 5.52185 5.71602 5.81543 5.89084 6.28037 6.39956 6.69830 6.85379 6.92475 7.44030 8.94249 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.004049 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.750722 B = 6913.166742 C = 7333.029632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.287 6.287 3 C 0.208 3.792 4 C -0.154 4.154 5 C -0.048 4.048 6 C 0.604 3.396 7 O -0.557 6.557 8 N -0.601 5.601 9 C 0.098 3.902 10 C -0.116 4.116 11 C 0.036 3.964 12 H 0.014 0.986 13 C -0.528 4.528 14 H 0.070 0.930 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.958 3.042 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.263 1.263 21 C 0.134 3.866 22 O 0.119 5.881 23 N -0.397 5.397 24 H 0.139 0.861 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.203 0.797 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 -10.284 -2.847 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.010 3.990 4 C -0.177 4.177 5 C -0.114 4.114 6 C 0.390 3.610 7 O -0.437 6.437 8 N -0.331 5.331 9 C -0.023 4.023 10 C -0.154 4.154 11 C 0.017 3.983 12 H 0.032 0.968 13 C -0.566 4.566 14 H 0.088 0.912 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.187 1.187 21 C 0.012 3.988 22 O 0.054 5.946 23 N -0.122 5.122 24 H 0.157 0.843 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.220 0.780 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.696 -10.585 -2.781 19.135 hybrid contribution 1.483 0.218 -0.034 1.499 sum -14.213 -10.367 -2.816 17.816 Atomic orbital electron populations 1.23415 0.74679 1.06411 1.02619 1.86235 1.24653 1.19398 1.89096 1.21903 0.90496 0.86228 1.00325 1.22379 0.95163 0.94560 1.05550 1.23693 0.86450 0.93806 1.07494 1.16381 0.85492 0.80954 0.78204 1.90840 1.28220 1.71231 1.53397 1.48944 1.11537 1.04185 1.68460 1.22433 0.85070 0.91641 1.03173 1.22670 0.96945 0.93464 1.02305 1.19799 0.92370 0.91376 0.94750 0.96776 1.21371 0.94185 1.05822 1.35225 0.91227 1.25850 0.99391 0.98633 0.94850 1.70082 1.12110 1.34075 1.39582 0.85547 0.77559 0.79476 0.79047 1.20101 1.21637 1.18673 1.22397 0.87091 0.89820 0.99489 1.85020 1.11427 1.29499 1.68688 1.73943 1.16024 0.96941 1.25316 0.84348 0.92017 0.91931 0.77981 0.89842 0.89185 0.89103 0.90573 0.92922 0.93580 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.73 113.37 1.22 1.53 16 2 O -0.29 -6.17 10.57 -90.58 -0.96 -7.12 16 3 C 0.21 5.29 8.00 85.78 0.69 5.98 16 4 C -0.15 -4.15 10.97 22.80 0.25 -3.90 16 5 C -0.05 -1.50 7.08 24.36 0.17 -1.32 16 6 C 0.60 23.32 7.85 86.70 0.68 24.00 16 7 O -0.56 -25.31 17.17 -3.98 -0.07 -25.37 16 8 N -0.60 -23.58 3.34 -814.86 -2.72 -26.29 16 9 C 0.10 3.06 5.59 86.68 0.48 3.54 16 10 C -0.12 -4.01 6.39 31.78 0.20 -3.81 16 11 C 0.04 1.70 2.96 -10.15 -0.03 1.67 16 12 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 13 C -0.53 -27.01 8.55 25.60 0.22 -26.79 16 14 H 0.07 3.39 7.79 -2.91 -0.02 3.37 16 15 C 0.01 0.66 5.34 84.65 0.45 1.11 16 16 N -0.92 -52.53 12.06 21.45 0.26 -52.28 16 17 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 C 0.13 6.35 5.65 86.85 0.49 6.84 16 22 O 0.12 3.34 9.03 65.66 0.59 3.93 16 23 N -0.40 -10.61 11.50 -172.03 -1.98 -12.59 16 24 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.20 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.08 2.32 7.73 -2.38 -0.02 2.30 16 29 H 0.09 2.37 7.84 -2.39 -0.02 2.35 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.08 2.54 8.03 -2.39 -0.02 2.52 16 32 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 33 H 0.05 2.28 8.03 -2.39 -0.02 2.26 16 34 H 0.05 2.72 7.32 -2.39 -0.02 2.70 16 Total: -1.00 -63.52 297.45 3.09 -60.42 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.11 Total: 6.40 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 4.82 Total: 8.85 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -4.44 Total: -91.15 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.43 Total: -28.57 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -63.52 3.09 -60.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704708587.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.319 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds