Wall clock time and date at job start Mon Mar 30 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46983 * 274.25933 * 3 2 1 5 5 C 1.37102 * 120.00106 * 263.95627 * 4 3 2 6 6 H 1.07998 * 120.00173 * 200.21991 * 5 4 3 7 7 C 1.38954 * 120.00077 * 20.21626 * 5 4 3 8 8 N 1.31417 * 119.99601 * 21.42674 * 7 5 4 9 9 Si 1.86790 * 120.00035 * 201.43103 * 7 5 4 10 10 H 1.48498 * 109.47727 * 90.00090 * 9 7 5 11 11 H 1.48504 * 109.47188 * 209.99982 * 9 7 5 12 12 H 1.48502 * 109.47416 * 329.99785 * 9 7 5 13 13 C 1.34773 * 120.00224 * 83.95495 * 4 3 2 14 14 O 1.21294 * 120.00261 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99906 * 359.97438 * 13 4 3 16 16 N 1.46495 * 109.47143 * 180.02562 * 15 13 4 17 17 C 1.46001 * 118.53881 * 89.99940 * 16 15 13 18 18 C 1.52980 * 110.04585 * 161.81484 * 17 16 15 19 19 N 1.47195 * 108.73029 * 50.29339 * 18 17 16 20 20 C 1.46907 * 110.17050 * 291.00403 * 19 18 17 21 21 C 1.33722 * 118.53395 * 269.73151 * 16 15 13 22 22 O 1.21273 * 118.62170 * 1.71048 * 21 16 15 23 23 H 1.08997 * 109.46948 * 154.26540 * 3 2 1 24 24 H 1.08996 * 109.47057 * 34.26080 * 3 2 1 25 25 H 0.96999 * 119.99348 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.46748 * 299.99980 * 15 13 4 27 27 H 1.09002 * 109.46702 * 59.99678 * 15 13 4 28 28 H 1.09004 * 109.38037 * 281.98866 * 17 16 15 29 29 H 1.08999 * 109.37644 * 41.64180 * 17 16 15 30 30 H 1.09000 * 109.59799 * 170.06406 * 18 17 16 31 31 H 1.09008 * 109.59671 * 290.36905 * 18 17 16 32 32 H 1.00896 * 111.00312 * 167.63899 * 19 18 17 33 33 H 1.09001 * 109.38159 * 170.45195 * 20 19 18 34 34 H 1.08998 * 109.38933 * 290.24276 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 -0.1017 1.3774 5 6 3.4422 1.0310 2.0681 6 1 4.0915 0.9619 2.9283 7 6 2.9574 2.2681 1.6613 8 7 1.8746 2.3379 0.9197 9 14 3.8446 3.8316 2.1683 10 1 4.8666 4.1744 1.1469 11 1 2.8653 4.9423 2.2807 12 1 4.5073 3.6215 3.4805 13 6 3.2056 -1.3093 1.9657 14 8 3.6104 -1.3941 3.1059 15 6 2.8249 -2.5544 1.2067 16 7 3.0317 -3.7281 2.0587 17 6 1.9276 -4.1837 2.8983 18 6 2.1694 -5.6268 3.3450 19 7 3.5277 -5.7275 3.9032 20 6 4.5264 -5.5660 2.8381 21 6 4.2216 -4.3376 2.0286 22 8 5.0925 -3.8769 1.3215 23 1 2.9709 0.9265 -0.4462 24 1 2.9717 -0.8485 -0.5785 25 1 1.5360 3.2014 0.6361 26 1 1.7757 -2.4966 0.9168 27 1 3.4444 -2.6393 0.3138 28 1 1.8517 -3.5416 3.7759 29 1 0.9975 -4.1314 2.3325 30 1 1.4398 -5.9008 4.1070 31 1 2.0730 -6.2953 2.4894 32 1 3.6551 -6.6027 4.3887 33 1 5.5174 -5.4727 3.2825 34 1 4.5034 -6.4385 2.1852 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705913404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:28 Heat of formation + Delta-G solvation = -8.823808 kcal Electronic energy + Delta-G solvation = -20606.177465 eV Core-core repulsion = 17347.436380 eV Total energy + Delta-G solvation = -3258.741085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33082 -38.52136 -36.59929 -35.80653 -34.60717 -34.06720 -31.86512 -29.84539 -28.35122 -27.35430 -25.43618 -24.19936 -22.96507 -19.72860 -18.23082 -17.85932 -17.00131 -16.80450 -16.73235 -16.18855 -15.39079 -14.92877 -14.65744 -14.57306 -14.02973 -13.71344 -13.48644 -13.12080 -12.99172 -12.55429 -12.18913 -12.11503 -11.82827 -11.67002 -11.57976 -11.36304 -11.16768 -11.08421 -10.56854 -10.37968 -10.30070 -9.67261 -9.23238 -9.06169 -8.75399 -8.13170 -7.99787 -6.48056 -3.98256 2.80666 3.12768 3.15430 3.25060 3.30166 3.58153 3.79762 3.93882 3.94937 4.14425 4.58036 4.74699 4.85220 4.91956 4.99659 5.15702 5.16708 5.27092 5.45980 5.53389 5.61429 5.70227 5.79377 6.04077 6.10046 6.42580 6.47870 6.62342 7.03602 7.49925 7.66705 7.92880 8.30206 8.40477 8.70892 9.03371 9.21504 9.76214 10.58284 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.005838 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.254036 B = 4795.053941 C = 5253.383391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.245 3.755 3 C 0.220 3.780 4 N -0.444 5.444 5 C -0.311 4.311 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.878 5.878 9 Si 0.927 3.073 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.446 3.554 14 O -0.558 6.558 15 C 0.093 3.907 16 N -0.576 5.576 17 C 0.117 3.883 18 C 0.041 3.959 19 N -0.679 5.679 20 C 0.048 3.952 21 C 0.523 3.477 22 O -0.549 6.549 23 H 0.126 0.874 24 H 0.085 0.915 25 H 0.273 0.727 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.349 0.651 33 H 0.112 0.888 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 -14.025 -0.742 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.073 4.073 3 C 0.092 3.908 4 N -0.165 5.165 5 C -0.438 4.438 6 H 0.124 0.876 7 C -0.172 4.172 8 N -0.517 5.517 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.233 3.767 14 O -0.439 6.439 15 C -0.034 4.034 16 N -0.308 5.308 17 C -0.007 4.007 18 C -0.088 4.088 19 N -0.312 5.312 20 C -0.084 4.084 21 C 0.311 3.689 22 O -0.426 6.426 23 H 0.143 0.857 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.059 0.941 32 H 0.168 0.832 33 H 0.130 0.870 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.156 -13.017 -0.391 13.024 hybrid contribution 0.436 0.245 -0.212 0.543 sum 0.280 -12.772 -0.603 12.789 Atomic orbital electron populations 1.80890 1.13526 1.12122 1.08655 1.29328 0.95364 0.90292 0.92336 1.18712 0.81608 1.04127 0.86379 1.43601 1.57055 1.05697 1.10174 1.19695 1.27716 0.82589 1.13776 0.87571 1.25280 0.94835 0.99626 0.97425 1.69838 1.18108 1.26542 1.37187 0.85897 0.78983 0.80376 0.79351 1.20128 1.21148 1.19358 1.20483 0.84040 0.84500 0.87629 1.90561 1.49229 1.85936 1.18202 1.21437 1.02325 0.85132 0.94470 1.46856 1.13009 1.28125 1.42805 1.21545 0.88837 0.94829 0.95483 1.22321 0.91314 0.96027 0.99167 1.60735 1.02274 1.41261 1.26932 1.22059 0.98264 0.95360 0.92742 1.19920 0.81608 0.85185 0.82196 1.90716 1.44207 1.65391 1.42333 0.85656 0.89757 0.91680 0.89049 0.87753 0.90171 0.90521 0.88672 0.94063 0.83205 0.86961 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.90 18.54 42.15 0.78 -10.12 16 2 C 0.25 5.30 12.82 -20.76 -0.27 5.03 16 3 C 0.22 4.38 4.91 -6.83 -0.03 4.34 16 4 N -0.44 -10.59 2.60 -117.93 -0.31 -10.89 16 5 C -0.31 -8.19 9.27 -14.93 -0.14 -8.33 16 6 H 0.11 3.00 7.43 -52.49 -0.39 2.61 16 7 C 0.03 0.80 4.84 -17.46 -0.08 0.71 16 8 N -0.88 -22.35 9.58 55.50 0.53 -21.81 16 9 Si 0.93 20.06 29.60 -169.99 -5.03 15.02 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.45 10.50 7.62 -10.98 -0.08 10.42 16 14 O -0.56 -15.25 16.10 5.54 0.09 -15.16 16 15 C 0.09 1.70 4.36 -5.19 -0.02 1.68 16 16 N -0.58 -9.79 2.32 -175.97 -0.41 -10.19 16 17 C 0.12 1.58 6.62 -4.32 -0.03 1.55 16 18 C 0.04 0.40 6.62 -3.67 -0.02 0.38 16 19 N -0.68 -7.36 6.93 -115.08 -0.80 -8.16 16 20 C 0.05 0.59 6.68 -5.19 -0.03 0.55 16 21 C 0.52 9.09 7.56 -11.68 -0.09 9.00 16 22 O -0.55 -11.47 16.33 5.56 0.09 -11.38 16 23 H 0.13 2.56 6.63 -51.93 -0.34 2.21 16 24 H 0.08 1.30 6.69 -51.93 -0.35 0.96 16 25 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.09 1.50 7.26 -51.93 -0.38 1.12 16 27 H 0.10 1.80 6.53 -51.93 -0.34 1.47 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 0.88 7.98 -51.93 -0.41 0.47 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.35 8.08 -51.92 -0.42 -0.07 16 32 H 0.35 2.61 8.90 -39.29 -0.35 2.26 16 33 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -34.71 295.00 -5.22 -39.93 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.81 Total: 2.97 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: -0.80 Total: 25.35 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.20 Total: -61.18 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.18 Total: -26.54 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.71 -5.22 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705913404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.105 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds