Wall clock time and date at job start Mon Mar 30 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46983 * 274.25933 * 3 2 1 5 5 C 1.37102 * 120.00106 * 263.95627 * 4 3 2 6 6 H 1.07998 * 120.00173 * 200.21991 * 5 4 3 7 7 C 1.38954 * 120.00077 * 20.21626 * 5 4 3 8 8 N 1.31417 * 119.99601 * 21.42674 * 7 5 4 9 9 Si 1.86790 * 120.00035 * 201.43103 * 7 5 4 10 10 H 1.48498 * 109.47727 * 90.00090 * 9 7 5 11 11 H 1.48504 * 109.47188 * 209.99982 * 9 7 5 12 12 H 1.48502 * 109.47416 * 329.99785 * 9 7 5 13 13 C 1.34773 * 120.00224 * 83.95495 * 4 3 2 14 14 O 1.21294 * 120.00261 * 179.97438 * 13 4 3 15 15 C 1.50708 * 119.99906 * 359.97438 * 13 4 3 16 16 N 1.46495 * 109.47143 * 180.02562 * 15 13 4 17 17 C 1.46001 * 118.53881 * 89.99940 * 16 15 13 18 18 C 1.52980 * 110.04585 * 161.81484 * 17 16 15 19 19 N 1.47195 * 108.73029 * 50.29339 * 18 17 16 20 20 C 1.46907 * 110.17050 * 291.00403 * 19 18 17 21 21 C 1.33722 * 118.53395 * 269.73151 * 16 15 13 22 22 O 1.21273 * 118.62170 * 1.71048 * 21 16 15 23 23 H 1.08997 * 109.46948 * 154.26540 * 3 2 1 24 24 H 1.08996 * 109.47057 * 34.26080 * 3 2 1 25 25 H 0.96999 * 119.99348 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.46748 * 299.99980 * 15 13 4 27 27 H 1.09002 * 109.46702 * 59.99678 * 15 13 4 28 28 H 1.09004 * 109.38037 * 281.98866 * 17 16 15 29 29 H 1.08999 * 109.37644 * 41.64180 * 17 16 15 30 30 H 1.09000 * 109.59799 * 170.06406 * 18 17 16 31 31 H 1.09008 * 109.59671 * 290.36905 * 18 17 16 32 32 H 1.00896 * 111.00312 * 167.63899 * 19 18 17 33 33 H 1.09001 * 109.38159 * 170.45195 * 20 19 18 34 34 H 1.08998 * 109.38933 * 290.24276 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 -0.1017 1.3774 5 6 3.4422 1.0310 2.0681 6 1 4.0915 0.9619 2.9283 7 6 2.9574 2.2681 1.6613 8 7 1.8746 2.3379 0.9197 9 14 3.8446 3.8316 2.1683 10 1 4.8666 4.1744 1.1469 11 1 2.8653 4.9423 2.2807 12 1 4.5073 3.6215 3.4805 13 6 3.2056 -1.3093 1.9657 14 8 3.6104 -1.3941 3.1059 15 6 2.8249 -2.5544 1.2067 16 7 3.0317 -3.7281 2.0587 17 6 1.9276 -4.1837 2.8983 18 6 2.1694 -5.6268 3.3450 19 7 3.5277 -5.7275 3.9032 20 6 4.5264 -5.5660 2.8381 21 6 4.2216 -4.3376 2.0286 22 8 5.0925 -3.8769 1.3215 23 1 2.9709 0.9265 -0.4462 24 1 2.9717 -0.8485 -0.5785 25 1 1.5360 3.2014 0.6361 26 1 1.7757 -2.4966 0.9168 27 1 3.4444 -2.6393 0.3138 28 1 1.8517 -3.5416 3.7759 29 1 0.9975 -4.1314 2.3325 30 1 1.4398 -5.9008 4.1070 31 1 2.0730 -6.2953 2.4894 32 1 3.6551 -6.6027 4.3887 33 1 5.5174 -5.4727 3.2825 34 1 4.5034 -6.4385 2.1852 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705913404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:24 Heat of formation + Delta-G solvation = -36.053715 kcal Electronic energy + Delta-G solvation = -20607.358242 eV Core-core repulsion = 17347.436380 eV Total energy + Delta-G solvation = -3259.921862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.66710 -40.23601 -37.76557 -37.58683 -36.24444 -35.53514 -33.79357 -30.90539 -29.82681 -29.03699 -26.86685 -25.71892 -24.04621 -21.36996 -19.82135 -19.36730 -18.45722 -18.20804 -18.07530 -17.68332 -16.83581 -16.38555 -16.11699 -15.68937 -15.55920 -15.39857 -14.88757 -14.72579 -14.31004 -14.05462 -13.90360 -13.50287 -13.28857 -13.13088 -13.06850 -12.86853 -12.70380 -12.36803 -12.30605 -12.14260 -12.08727 -11.14237 -11.00600 -10.75910 -9.93415 -9.68485 -9.52942 -8.42945 -6.00243 1.37665 1.43821 1.49489 1.57845 1.78419 1.94884 2.07623 2.21954 2.34698 2.96156 3.12871 3.15801 3.51184 3.53714 3.86606 3.94016 4.12127 4.23230 4.27578 4.32640 4.45095 4.54640 4.62936 4.80407 4.83298 4.97948 5.21536 5.45523 5.73547 6.00953 6.37048 6.40647 6.44995 6.97598 7.06981 7.11600 7.31146 7.88810 8.60696 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.005838 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.254036 B = 4795.053941 C = 5253.383391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.257 3.743 3 C 0.220 3.780 4 N -0.454 5.454 5 C -0.342 4.342 6 H 0.075 0.925 7 C 0.009 3.991 8 N -0.889 5.889 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.436 3.564 14 O -0.608 6.608 15 C 0.101 3.899 16 N -0.581 5.581 17 C 0.107 3.893 18 C 0.049 3.951 19 N -0.694 5.694 20 C 0.056 3.944 21 C 0.509 3.491 22 O -0.595 6.595 23 H 0.123 0.877 24 H 0.135 0.865 25 H 0.275 0.725 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.065 0.935 32 H 0.371 0.629 33 H 0.112 0.888 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -15.396 -1.425 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.175 5.175 5 C -0.469 4.469 6 H 0.093 0.907 7 C -0.194 4.194 8 N -0.527 5.527 9 Si 0.811 3.189 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.225 3.775 14 O -0.492 6.492 15 C -0.026 4.026 16 N -0.311 5.311 17 C -0.016 4.016 18 C -0.080 4.080 19 N -0.330 5.330 20 C -0.076 4.076 21 C 0.299 3.701 22 O -0.475 6.475 23 H 0.140 0.860 24 H 0.152 0.848 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.193 0.807 33 H 0.130 0.870 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.619 -14.420 -1.086 14.474 hybrid contribution 0.539 0.696 0.043 0.881 sum -0.080 -13.724 -1.043 13.764 Atomic orbital electron populations 1.80894 1.14340 1.13177 1.09462 1.29584 0.95584 0.89397 0.91501 1.19006 0.80573 1.06229 0.84846 1.43779 1.56863 1.05330 1.11518 1.19525 1.28735 0.84392 1.14266 0.90739 1.25876 0.94974 1.01457 0.97071 1.69906 1.18332 1.27230 1.37245 0.85034 0.78149 0.76995 0.78761 1.18422 1.20775 1.20553 1.21447 0.82719 0.85863 0.87453 1.90518 1.51258 1.86893 1.20575 1.21353 1.03537 0.83349 0.94331 1.47112 1.14004 1.27261 1.42745 1.21815 0.88817 0.96794 0.94130 1.22349 0.91320 0.93449 1.00865 1.60650 1.02477 1.43078 1.26846 1.21979 0.98529 0.93912 0.93133 1.20929 0.80942 0.86317 0.81936 1.90679 1.45456 1.67053 1.44349 0.85954 0.84805 0.91449 0.86896 0.86540 0.93508 0.88346 0.85931 0.91713 0.80688 0.87047 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.55 18.54 20.01 0.37 -22.18 16 2 C 0.26 10.84 12.82 89.44 1.15 11.99 16 3 C 0.22 8.54 4.91 84.57 0.42 8.96 16 4 N -0.45 -21.88 2.60 -645.42 -1.68 -23.56 16 5 C -0.34 -18.47 9.27 84.04 0.78 -17.69 16 6 H 0.07 4.43 7.43 -2.91 -0.02 4.41 16 7 C 0.01 0.44 4.84 84.93 0.41 0.85 16 8 N -0.89 -44.78 9.58 21.67 0.21 -44.57 16 9 Si 0.99 41.15 29.60 68.60 2.03 43.18 16 10 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 13 C 0.44 20.86 7.62 87.66 0.67 21.53 16 14 O -0.61 -34.53 16.10 -3.07 -0.05 -34.58 16 15 C 0.10 3.63 4.36 85.64 0.37 4.00 16 16 N -0.58 -19.21 2.32 -829.62 -1.92 -21.13 16 17 C 0.11 2.76 6.62 86.47 0.57 3.33 16 18 C 0.05 0.81 6.62 86.24 0.57 1.38 16 19 N -0.69 -13.25 6.93 -518.01 -3.59 -16.84 16 20 C 0.06 1.27 6.68 85.41 0.57 1.84 16 21 C 0.51 17.27 7.56 87.68 0.66 17.93 16 22 O -0.59 -24.87 16.33 -3.01 -0.05 -24.92 16 23 H 0.12 4.87 6.63 -2.39 -0.02 4.86 16 24 H 0.13 3.83 6.69 -2.39 -0.02 3.81 16 25 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 26 H 0.11 3.51 7.26 -2.39 -0.02 3.50 16 27 H 0.12 3.87 6.53 -2.39 -0.02 3.86 16 28 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.10 2.05 7.98 -2.39 -0.02 2.03 16 30 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 0.81 8.08 -2.38 -0.02 0.79 16 32 H 0.37 4.31 8.90 -89.70 -0.80 3.51 16 33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -77.82 295.00 1.84 -75.98 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.35 Total: 14.50 kcal Atomic # 6 Polarization: 47.95 SS G_CDS: 6.17 Total: 54.12 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -6.61 Total: -128.28 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -0.10 Total: -59.50 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -77.82 1.84 -75.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705913404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.923 kcal (2) G-P(sol) polarization free energy of solvation -77.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds