Wall clock time and date at job start Mon Mar 30 2020 04:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37093 * 120.00197 * 2 1 4 4 H 1.08002 * 120.00372 * 202.40909 * 3 2 1 5 5 C 1.38950 * 119.99805 * 22.41599 * 3 2 1 6 6 N 1.31408 * 120.00438 * 11.58620 * 5 3 2 7 7 Si 1.86806 * 120.00105 * 191.59139 * 5 3 2 8 8 H 1.48501 * 109.46831 * 59.99139 * 7 5 3 9 9 H 1.48493 * 109.47285 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46820 * 300.00069 * 7 5 3 11 11 C 1.34776 * 119.99624 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99804 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00357 * 359.97438 * 11 2 1 14 14 C 1.53000 * 109.47349 * 180.02562 * 13 11 2 15 15 N 1.46498 * 109.47117 * 180.02562 * 14 13 11 16 16 C 1.34776 * 120.00103 * 180.02562 * 15 14 13 17 17 O 1.21616 * 120.00039 * 359.97438 * 16 15 14 18 18 C 1.47375 * 120.00414 * 180.02562 * 16 15 14 19 19 C 1.47022 * 127.19653 * 180.28351 * 18 16 15 20 20 C 1.34179 * 105.95297 * 180.16772 * 19 18 16 21 21 O 1.34209 * 109.12419 * 359.60718 * 20 19 18 22 22 C 1.33654 * 110.91162 * 0.26358 * 21 20 19 23 23 H 1.08994 * 109.47049 * 272.15578 * 1 2 3 24 24 H 1.08997 * 109.46683 * 32.15369 * 1 2 3 25 25 H 1.09000 * 109.47366 * 152.14798 * 1 2 3 26 26 H 0.96996 * 120.00706 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.46855 * 59.99986 * 13 11 2 28 28 H 1.09004 * 109.47077 * 300.00266 * 13 11 2 29 29 H 1.08999 * 109.47065 * 59.99641 * 14 13 11 30 30 H 1.09004 * 109.46907 * 299.99952 * 14 13 11 31 31 H 0.96998 * 120.00220 * 359.97438 * 15 14 13 32 32 H 1.07998 * 127.02076 * 0.07929 * 19 18 16 33 33 H 1.08001 * 125.43152 * 179.86662 * 20 19 18 34 34 H 1.07995 * 125.79896 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5345 2.3451 0.4589 6 7 0.3897 2.2707 1.0997 7 14 2.3337 4.0078 0.1647 8 1 2.4816 4.2344 -1.2954 9 1 1.4827 5.0761 0.7474 10 1 3.6720 4.0343 0.8077 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 7 1.6470 -4.9040 -0.0011 16 6 2.3208 -6.0712 -0.0007 17 8 3.5370 -6.0713 -0.0003 18 6 1.5839 -7.3475 -0.0019 19 6 2.1537 -8.7028 0.0041 20 6 1.1074 -9.5428 -0.0035 21 8 -0.0293 -8.8293 -0.0047 22 6 0.2305 -7.5182 -0.0039 23 1 -0.3633 0.0387 1.0269 24 1 -0.3632 0.8700 -0.5469 25 1 -0.3634 -0.9086 -0.4801 26 1 -0.0405 3.0789 1.4197 27 1 0.7584 -2.5298 -0.8903 28 1 0.7590 -2.5302 0.8897 29 1 3.0062 -3.5775 0.8894 30 1 3.0062 -3.5775 -0.8905 31 1 0.6770 -4.9040 -0.0011 32 1 3.2006 -8.9680 0.0115 33 1 1.1701 -10.6210 -0.0039 34 1 -0.5060 -6.7283 -0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706232106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:04 Heat of formation + Delta-G solvation = -48.407998 kcal Electronic energy + Delta-G solvation = -19180.540126 eV Core-core repulsion = 15887.789791 eV Total energy + Delta-G solvation = -3292.750335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.75772 -39.40486 -38.43391 -35.17662 -34.51819 -33.09110 -31.74665 -30.82126 -29.52135 -26.39166 -25.12252 -23.89136 -22.34829 -21.65815 -20.29228 -19.08147 -18.23235 -16.92205 -16.40968 -16.38855 -16.16221 -15.51143 -15.26113 -14.85119 -14.43062 -14.25743 -14.01863 -13.28077 -13.13402 -13.09464 -12.67885 -12.34390 -11.78262 -11.57032 -11.38066 -11.16751 -10.98733 -10.84922 -10.41636 -10.24533 -10.02928 -10.02448 -9.11997 -9.04558 -8.91161 -8.45634 -7.71715 -6.33744 -3.90312 1.15187 1.86624 2.66280 3.15013 3.18029 3.23676 3.28738 3.35255 3.84817 4.13226 4.34509 4.47585 4.83566 4.88527 5.09440 5.20400 5.37080 5.43613 5.52188 5.65144 5.69847 5.93632 6.03913 6.25255 6.31819 6.34812 6.56488 6.68650 6.83426 7.17865 7.52815 7.54749 8.09865 8.25908 8.45485 9.16118 9.39411 9.94240 10.69980 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.052769 B = 0.003204 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.489161 B = 8737.329153 C = 9197.823179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.307 4.307 4 H 0.099 0.901 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.928 3.072 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.448 3.552 12 O -0.587 6.587 13 C -0.141 4.141 14 C 0.139 3.861 15 N -0.726 5.726 16 C 0.581 3.419 17 O -0.533 6.533 18 C -0.230 4.230 19 C -0.165 4.165 20 C -0.043 4.043 21 O -0.176 6.176 22 C 0.017 3.983 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.268 0.732 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.395 0.605 32 H 0.159 0.841 33 H 0.208 0.792 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -18.021 -2.044 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.165 5.165 3 C -0.435 4.435 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.755 3.245 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.235 3.765 12 O -0.472 6.472 13 C -0.182 4.182 14 C 0.016 3.984 15 N -0.377 5.377 16 C 0.368 3.632 17 O -0.411 6.411 18 C -0.235 4.235 19 C -0.185 4.185 20 C -0.109 4.109 21 O -0.071 6.071 22 C -0.053 4.053 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.177 0.823 33 H 0.225 0.775 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.025 -17.954 -1.957 19.039 hybrid contribution -0.249 1.021 -0.006 1.051 sum -6.274 -16.934 -1.962 18.165 Atomic orbital electron populations 1.21518 0.81128 0.98799 1.01729 1.43580 1.05541 1.04754 1.62580 1.19636 0.99543 0.83803 1.40497 0.88341 1.25341 0.96508 1.00108 0.95313 1.69977 1.17378 1.29422 1.35634 0.85971 0.79054 0.80758 0.78765 1.19910 1.20949 1.19744 1.19739 0.87969 0.84529 0.84274 1.90555 1.13859 1.87056 1.55774 1.21693 0.98996 0.94283 1.03247 1.21107 0.93849 0.79454 1.04012 1.45943 1.10032 1.06147 1.75571 1.17253 0.86938 0.82388 0.76600 1.90813 1.13309 1.87409 1.49542 1.21641 0.93367 0.94891 1.13556 1.22823 1.00684 0.90092 1.04888 1.23941 0.82176 0.97822 1.06987 1.83786 1.34955 1.17422 1.70934 1.24473 0.96247 0.83765 1.00815 0.92350 0.91259 0.95548 0.92197 0.89927 0.89723 0.90466 0.90536 0.77158 0.82287 0.77505 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.52 59.85 0.51 2.90 16 2 N -0.45 -11.21 3.02 -122.19 -0.37 -11.58 16 3 C -0.31 -8.53 9.29 -14.94 -0.14 -8.67 16 4 H 0.10 2.87 7.41 -52.49 -0.39 2.48 16 5 C 0.03 0.79 5.11 -17.47 -0.09 0.71 16 6 N -0.88 -23.26 10.62 55.50 0.59 -22.67 16 7 Si 0.93 20.71 29.57 -169.99 -5.03 15.69 16 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 C 0.45 10.63 7.63 -10.99 -0.08 10.55 16 12 O -0.59 -16.25 15.67 5.54 0.09 -16.16 16 13 C -0.14 -2.37 4.34 -27.88 -0.12 -2.49 16 14 C 0.14 2.34 4.96 -4.04 -0.02 2.32 16 15 N -0.73 -9.45 5.55 -61.40 -0.34 -9.79 16 16 C 0.58 8.69 7.81 -12.54 -0.10 8.59 16 17 O -0.53 -10.38 16.98 5.26 0.09 -10.29 16 18 C -0.23 -2.67 6.31 -103.28 -0.65 -3.32 16 19 C -0.17 -1.71 11.01 -37.45 -0.41 -2.12 16 20 C -0.04 -0.33 12.03 29.30 0.35 0.02 16 21 O -0.18 -1.50 10.52 7.66 0.08 -1.42 16 22 C 0.02 0.14 11.61 30.08 0.35 0.49 16 23 H 0.06 1.29 7.54 -51.93 -0.39 0.90 16 24 H 0.07 1.57 7.06 -51.93 -0.37 1.20 16 25 H 0.03 0.44 6.36 -51.93 -0.33 0.11 16 26 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.08 1.17 7.40 -51.93 -0.38 0.79 16 28 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 29 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 31 H 0.39 3.55 7.44 -40.82 -0.30 3.24 16 32 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.21 0.89 7.47 -52.49 -0.39 0.50 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -35.34 301.30 -4.55 -39.89 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.80 Total: 2.83 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.40 Total: 8.97 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.12 Total: -44.05 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: 0.26 Total: -27.87 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.34 -4.55 -39.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706232106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.517 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds