Wall clock time and date at job start Mon Mar 30 2020 04:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37093 * 120.00197 * 2 1 4 4 H 1.08002 * 120.00372 * 202.40909 * 3 2 1 5 5 C 1.38950 * 119.99805 * 22.41599 * 3 2 1 6 6 N 1.31408 * 120.00438 * 11.58620 * 5 3 2 7 7 Si 1.86806 * 120.00105 * 191.59139 * 5 3 2 8 8 H 1.48501 * 109.46831 * 59.99139 * 7 5 3 9 9 H 1.48493 * 109.47285 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46820 * 300.00069 * 7 5 3 11 11 C 1.34776 * 119.99624 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99804 * 179.97438 * 11 2 1 13 13 C 1.50699 * 120.00357 * 359.97438 * 11 2 1 14 14 C 1.53000 * 109.47349 * 180.02562 * 13 11 2 15 15 N 1.46498 * 109.47117 * 180.02562 * 14 13 11 16 16 C 1.34776 * 120.00103 * 180.02562 * 15 14 13 17 17 O 1.21616 * 120.00039 * 359.97438 * 16 15 14 18 18 C 1.47375 * 120.00414 * 180.02562 * 16 15 14 19 19 C 1.47022 * 127.19653 * 180.28351 * 18 16 15 20 20 C 1.34179 * 105.95297 * 180.16772 * 19 18 16 21 21 O 1.34209 * 109.12419 * 359.60718 * 20 19 18 22 22 C 1.33654 * 110.91162 * 0.26358 * 21 20 19 23 23 H 1.08994 * 109.47049 * 272.15578 * 1 2 3 24 24 H 1.08997 * 109.46683 * 32.15369 * 1 2 3 25 25 H 1.09000 * 109.47366 * 152.14798 * 1 2 3 26 26 H 0.96996 * 120.00706 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.46855 * 59.99986 * 13 11 2 28 28 H 1.09004 * 109.47077 * 300.00266 * 13 11 2 29 29 H 1.08999 * 109.47065 * 59.99641 * 14 13 11 30 30 H 1.09004 * 109.46907 * 299.99952 * 14 13 11 31 31 H 0.96998 * 120.00220 * 359.97438 * 15 14 13 32 32 H 1.07998 * 127.02076 * 0.07929 * 19 18 16 33 33 H 1.08001 * 125.43152 * 179.86662 * 20 19 18 34 34 H 1.07995 * 125.79896 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5345 2.3451 0.4589 6 7 0.3897 2.2707 1.0997 7 14 2.3337 4.0078 0.1647 8 1 2.4816 4.2344 -1.2954 9 1 1.4827 5.0761 0.7474 10 1 3.6720 4.0343 0.8077 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6353 -0.0005 15 7 1.6470 -4.9040 -0.0011 16 6 2.3208 -6.0712 -0.0007 17 8 3.5370 -6.0713 -0.0003 18 6 1.5839 -7.3475 -0.0019 19 6 2.1537 -8.7028 0.0041 20 6 1.1074 -9.5428 -0.0035 21 8 -0.0293 -8.8293 -0.0047 22 6 0.2305 -7.5182 -0.0039 23 1 -0.3633 0.0387 1.0269 24 1 -0.3632 0.8700 -0.5469 25 1 -0.3634 -0.9086 -0.4801 26 1 -0.0405 3.0789 1.4197 27 1 0.7584 -2.5298 -0.8903 28 1 0.7590 -2.5302 0.8897 29 1 3.0062 -3.5775 0.8894 30 1 3.0062 -3.5775 -0.8905 31 1 0.6770 -4.9040 -0.0011 32 1 3.2006 -8.9680 0.0115 33 1 1.1701 -10.6210 -0.0039 34 1 -0.5060 -6.7283 -0.0049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706232106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:03 Heat of formation + Delta-G solvation = -75.526949 kcal Electronic energy + Delta-G solvation = -19181.716092 eV Core-core repulsion = 15887.789791 eV Total energy + Delta-G solvation = -3293.926301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.44428 -40.75442 -40.14243 -36.85472 -36.14064 -33.94041 -33.66354 -32.02830 -30.45849 -28.21062 -26.74683 -25.28777 -23.60352 -22.35403 -21.41068 -20.50364 -19.27446 -18.88067 -18.02964 -17.22654 -17.16489 -16.87335 -16.66001 -16.16160 -15.89042 -15.79534 -15.52741 -14.66109 -14.41071 -14.21847 -13.82908 -13.59870 -13.34006 -13.24771 -13.10639 -12.87823 -12.62010 -12.46470 -12.19087 -12.11389 -11.28496 -11.01628 -10.85628 -10.39701 -10.22706 -9.71037 -9.68688 -8.33334 -5.98585 0.37686 1.14912 1.38575 1.40817 1.50752 1.93201 2.02411 2.13893 2.30867 2.31206 3.09285 3.16247 3.62689 3.77993 3.85265 4.09913 4.14842 4.18294 4.48730 4.57314 4.76393 4.78690 4.89978 4.97119 5.05677 5.10820 5.30825 5.34687 5.44832 5.44875 6.01245 6.08935 6.47553 6.52742 7.16529 7.18609 7.47777 8.02808 8.67635 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.052769 B = 0.003204 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.489161 B = 8737.329153 C = 9197.823179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.462 5.462 3 C -0.348 4.348 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.986 3.014 8 H -0.268 1.268 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.434 3.566 12 O -0.640 6.640 13 C -0.121 4.121 14 C 0.151 3.849 15 N -0.705 5.705 16 C 0.579 3.421 17 O -0.593 6.593 18 C -0.272 4.272 19 C -0.203 4.203 20 C -0.020 4.020 21 O -0.175 6.175 22 C 0.052 3.948 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.274 0.726 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.419 0.581 32 H 0.150 0.850 33 H 0.248 0.752 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -19.158 -2.211 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.181 5.181 3 C -0.476 4.476 4 H 0.086 0.914 5 C -0.202 4.202 6 N -0.532 5.532 7 Si 0.810 3.190 8 H -0.193 1.193 9 H -0.192 1.192 10 H -0.205 1.205 11 C 0.224 3.776 12 O -0.528 6.528 13 C -0.161 4.161 14 C 0.027 3.973 15 N -0.358 5.358 16 C 0.369 3.631 17 O -0.475 6.475 18 C -0.277 4.277 19 C -0.223 4.223 20 C -0.085 4.085 21 O -0.069 6.069 22 C -0.018 4.018 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.167 0.833 33 H 0.264 0.736 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -9.373 -19.106 -2.121 21.386 hybrid contribution 0.732 1.307 0.065 1.500 sum -8.641 -17.799 -2.056 19.892 Atomic orbital electron populations 1.21533 0.78789 1.00651 1.01446 1.43867 1.07091 1.04481 1.62622 1.19570 0.99229 0.86046 1.42755 0.91412 1.26025 0.97014 1.02658 0.94516 1.70039 1.17684 1.30480 1.35028 0.85103 0.77940 0.77072 0.78867 1.19283 1.19232 1.20533 1.20908 0.87854 0.86415 0.82454 1.90523 1.16566 1.88131 1.57583 1.21557 0.98396 0.89584 1.06523 1.20676 0.93871 0.81439 1.01340 1.45590 1.11038 1.04302 1.74835 1.17799 0.86459 0.83708 0.75144 1.90779 1.16049 1.88261 1.52429 1.21463 0.94986 0.93562 1.17664 1.22965 1.01338 0.90550 1.07430 1.24577 0.80829 0.99076 1.04025 1.83850 1.35115 1.17537 1.70370 1.25158 0.95435 0.84464 0.96764 0.93304 0.93084 0.90253 0.91642 0.85917 0.86597 0.93625 0.93229 0.74250 0.83270 0.73564 0.72920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.83 8.52 127.77 1.09 5.92 16 2 N -0.46 -23.28 3.02 -658.90 -1.99 -25.27 16 3 C -0.35 -19.83 9.29 84.04 0.78 -19.05 16 4 H 0.07 4.18 7.41 -2.91 -0.02 4.15 16 5 C 0.00 -0.01 5.11 84.93 0.43 0.43 16 6 N -0.89 -46.42 10.62 21.66 0.23 -46.19 16 7 Si 0.99 42.52 29.57 68.60 2.03 44.55 16 8 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 9 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.43 20.75 7.63 87.66 0.67 21.42 16 12 O -0.64 -36.99 15.67 -3.08 -0.05 -37.03 16 13 C -0.12 -3.76 4.34 29.85 0.13 -3.63 16 14 C 0.15 5.10 4.96 86.38 0.43 5.53 16 15 N -0.70 -17.24 5.55 -466.42 -2.59 -19.83 16 16 C 0.58 17.33 7.81 86.65 0.68 18.00 16 17 O -0.59 -24.41 16.98 -4.08 -0.07 -24.48 16 18 C -0.27 -5.94 6.31 -18.99 -0.12 -6.06 16 19 C -0.20 -4.05 11.01 23.65 0.26 -3.79 16 20 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 21 O -0.17 -2.26 10.52 4.51 0.05 -2.21 16 22 C 0.05 0.66 11.61 67.39 0.78 1.44 16 23 H 0.05 2.07 7.54 -2.39 -0.02 2.05 16 24 H 0.05 2.24 7.06 -2.39 -0.02 2.23 16 25 H 0.08 2.34 6.36 -2.39 -0.02 2.32 16 26 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 27 H 0.12 2.91 7.40 -2.39 -0.02 2.90 16 28 H 0.12 2.98 8.11 -2.39 -0.02 2.96 16 29 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 30 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.42 5.87 7.44 -92.71 -0.69 5.18 16 32 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.25 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.26 0.66 7.47 -2.91 -0.02 0.63 16 Total: -1.00 -83.37 301.30 3.99 -79.38 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.44 Total: 10.33 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 5.94 Total: 20.76 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -4.35 Total: -91.29 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -0.07 Total: -63.73 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -83.37 3.99 -79.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706232106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.852 kcal (2) G-P(sol) polarization free energy of solvation -83.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds