Wall clock time and date at job start Mon Mar 30 2020 04:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47083 * 2 1 4 4 C 1.50701 * 109.47295 * 239.99740 * 2 1 3 5 5 C 1.34509 * 125.78682 * 99.71747 * 4 2 1 6 6 C 1.41382 * 106.83947 * 179.88711 * 5 4 2 7 7 C 1.34515 * 106.83964 * 0.37365 * 6 5 4 8 8 O 1.34300 * 125.78694 * 280.02893 * 4 2 1 9 9 N 1.46501 * 109.46848 * 119.99815 * 2 1 3 10 10 C 1.46504 * 120.00175 * 60.00066 * 9 2 1 11 11 C 1.34780 * 120.00019 * 240.00172 * 9 2 1 12 12 O 1.21433 * 120.00073 * 5.34555 * 11 9 2 13 13 C 1.48835 * 119.99831 * 185.34436 * 11 9 2 14 14 O 1.21502 * 119.99825 * 5.99820 * 13 11 9 15 15 N 1.34776 * 119.99898 * 186.00704 * 13 11 9 16 16 C 1.36115 * 119.99884 * 179.97438 * 15 13 11 17 17 H 1.08000 * 120.00377 * 0.02562 * 16 15 13 18 18 C 1.39593 * 120.00032 * 179.97438 * 16 15 13 19 19 N 1.31013 * 119.99494 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00311 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46793 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47240 * 119.99697 * 20 18 16 23 23 H 1.48500 * 109.47315 * 240.00308 * 20 18 16 24 24 H 1.09003 * 109.46593 * 59.99894 * 1 2 3 25 25 H 1.08997 * 109.47083 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47087 * 300.00427 * 1 2 3 27 27 H 1.08002 * 126.58267 * 0.03163 * 5 4 2 28 28 H 1.08008 * 126.57897 * 180.16361 * 6 5 4 29 29 H 1.08000 * 125.78603 * 179.74123 * 7 6 5 30 30 H 1.08999 * 109.46743 * 95.24187 * 10 9 2 31 31 H 1.09000 * 109.46703 * 335.24628 * 10 9 2 32 32 H 1.08998 * 109.47315 * 215.24770 * 10 9 2 33 33 H 0.97002 * 119.99656 * 359.97438 * 15 13 11 34 34 H 0.97002 * 119.99356 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 6 2.4683 -0.1192 -2.3572 6 6 2.8435 -1.1543 -3.2442 7 6 2.6067 -2.3164 -2.6093 8 8 2.1154 -2.0414 -1.3900 9 7 2.0184 -0.6906 1.1962 10 6 1.6644 -2.0932 1.4281 11 6 2.7932 -0.0356 2.0834 12 8 3.0068 1.1515 1.9428 13 6 3.3869 -0.7672 3.2355 14 8 3.2645 -1.9733 3.3175 15 7 4.0603 -0.0919 4.1879 16 6 4.6028 -0.7610 5.2418 17 1 4.4941 -1.8330 5.3147 18 6 5.3007 -0.0616 6.2280 19 7 5.4329 1.2388 6.1393 20 14 6.0459 -0.9798 7.6739 21 1 5.7571 -2.4305 7.5410 22 1 7.5154 -0.7668 7.6914 23 1 5.4570 -0.4724 8.9392 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.5235 0.9426 -2.5471 28 1 3.2406 -1.0350 -4.2415 29 1 2.7814 -3.3031 -3.0121 30 1 2.4615 -2.7356 1.0539 31 1 0.7360 -2.3246 0.9061 32 1 1.5324 -2.2627 2.4967 33 1 4.1582 0.8709 4.1223 34 1 5.9182 1.7247 6.8244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706375436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:14 Heat of formation + Delta-G solvation = -64.817211 kcal Electronic energy + Delta-G solvation = -20178.964750 eV Core-core repulsion = 16885.502858 eV Total energy + Delta-G solvation = -3293.461892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.54254 -41.51048 -39.27830 -37.53998 -36.18342 -34.09553 -33.50376 -32.77214 -29.47770 -28.17598 -27.70601 -25.55946 -23.49025 -22.69203 -21.37921 -20.65222 -20.03251 -18.57077 -18.12397 -17.85732 -17.15645 -16.89743 -16.75216 -16.07943 -15.75542 -15.30631 -14.88836 -14.64075 -14.32674 -14.04271 -13.74790 -13.71160 -13.55000 -13.32736 -13.17318 -12.93061 -12.88405 -12.55745 -12.41055 -12.09566 -12.07830 -11.64580 -10.84557 -10.28540 -10.03772 -9.92026 -9.42430 -8.65717 -6.09919 0.52010 0.75805 1.40733 1.45296 1.53175 1.61737 1.78553 2.08378 2.27715 2.33739 3.05396 3.14921 3.55748 3.91929 4.00763 4.09657 4.18390 4.22848 4.30425 4.67508 4.73341 4.75513 4.87825 4.99148 5.01783 5.16079 5.21589 5.26140 5.37985 5.59997 5.69123 5.98119 6.20962 6.31092 6.71698 6.94304 7.27370 7.79940 8.50462 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.004427 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.483643 B = 6323.990692 C = 6460.466726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.211 3.789 3 H 0.116 0.884 4 C -0.041 4.041 5 C -0.208 4.208 6 C -0.224 4.224 7 C -0.043 4.043 8 O -0.182 6.182 9 N -0.584 5.584 10 C 0.098 3.902 11 C 0.516 3.484 12 O -0.564 6.564 13 C 0.391 3.609 14 O -0.601 6.601 15 N -0.512 5.512 16 C -0.342 4.342 17 H 0.100 0.900 18 C -0.005 4.005 19 N -0.897 5.897 20 Si 1.010 2.990 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.265 1.265 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.160 0.840 28 H 0.172 0.828 29 H 0.237 0.763 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.399 0.601 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 -3.892 -14.588 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.109 3.891 3 H 0.134 0.866 4 C -0.092 4.092 5 C -0.228 4.228 6 C -0.243 4.243 7 C -0.110 4.110 8 O -0.079 6.079 9 N -0.316 5.316 10 C -0.044 4.044 11 C 0.302 3.698 12 O -0.443 6.443 13 C 0.176 3.824 14 O -0.490 6.490 15 N -0.146 5.146 16 C -0.472 4.472 17 H 0.118 0.882 18 C -0.209 4.209 19 N -0.535 5.535 20 Si 0.831 3.169 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.190 1.190 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.177 0.823 28 H 0.190 0.810 29 H 0.253 0.747 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.234 0.766 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.771 -4.106 -14.285 16.772 hybrid contribution 0.708 0.447 0.381 0.920 sum -7.063 -3.659 -13.904 16.019 Atomic orbital electron populations 1.22140 0.90527 1.03949 1.04169 1.19854 0.96545 0.95436 0.77291 0.86575 1.22732 1.06830 0.81344 0.98300 1.21901 1.05160 1.01783 0.93945 1.22154 1.07601 0.91730 1.02843 1.24879 1.01258 1.02113 0.82738 1.84065 1.65252 1.24321 1.34217 1.47743 1.48575 1.14129 1.21185 1.21965 1.00528 0.78688 1.03216 1.20312 0.78970 0.86494 0.84047 1.90653 1.61531 1.15877 1.76281 1.19443 0.88472 0.87992 0.86509 1.90529 1.65203 1.14125 1.79150 1.41667 1.43108 1.10857 1.18966 1.20017 1.32385 0.94585 1.00215 0.88216 1.26537 0.96275 0.96391 1.01695 1.69560 1.39221 1.08231 1.36454 0.84637 0.77914 0.78322 0.76020 1.18716 1.19217 1.19026 0.88517 0.90929 0.91220 0.82265 0.81048 0.74722 0.93441 0.89176 0.90433 0.76612 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.16 71.98 0.66 -2.58 16 2 C 0.21 6.16 3.09 44.25 0.14 6.30 16 3 H 0.12 3.62 6.90 -2.39 -0.02 3.60 16 4 C -0.04 -1.14 6.07 24.83 0.15 -0.98 16 5 C -0.21 -5.05 10.80 22.19 0.24 -4.81 16 6 C -0.22 -4.58 10.91 22.19 0.24 -4.34 16 7 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 8 O -0.18 -4.90 9.07 -2.48 -0.02 -4.93 16 9 N -0.58 -21.31 2.75 -829.05 -2.28 -23.60 16 10 C 0.10 3.29 7.64 127.77 0.98 4.27 16 11 C 0.52 23.48 7.71 87.08 0.67 24.15 16 12 O -0.56 -27.13 15.82 -3.51 -0.06 -27.18 16 13 C 0.39 20.34 7.63 87.08 0.66 21.00 16 14 O -0.60 -32.33 12.93 -3.72 -0.05 -32.37 16 15 N -0.51 -28.39 5.24 -308.87 -1.62 -30.01 16 16 C -0.34 -19.30 9.67 84.36 0.82 -18.48 16 17 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 18 C 0.00 -0.25 5.51 85.14 0.47 0.22 16 19 N -0.90 -48.42 13.03 21.77 0.28 -48.14 16 20 Si 1.01 40.84 29.56 68.60 2.03 42.86 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.46 6.66 -2.39 -0.02 1.44 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.24 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.05 1.70 7.81 -2.39 -0.02 1.68 16 31 H 0.09 2.35 6.44 -2.39 -0.02 2.34 16 32 H 0.08 2.98 5.95 -2.39 -0.01 2.97 16 33 H 0.40 22.46 7.36 -92.71 -0.68 21.77 16 34 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 Total: -1.00 -67.65 297.04 4.58 -63.07 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.46 Total: 35.60 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 5.84 Total: 24.69 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.62 Total: -101.74 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -0.13 Total: -64.48 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -67.65 4.58 -63.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706375436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.744 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds