Wall clock time and date at job start Mon Mar 30 2020 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47052 * 2 1 4 4 C 1.50701 * 109.46814 * 119.99839 * 2 1 3 5 5 C 1.34520 * 125.78921 * 259.99955 * 4 2 1 6 6 C 1.41379 * 106.84047 * 180.02562 * 5 4 2 7 7 C 1.34510 * 106.84464 * 359.97438 * 6 5 4 8 8 O 1.34306 * 125.79288 * 80.02535 * 4 2 1 9 9 N 1.46500 * 109.47123 * 239.99245 * 2 1 3 10 10 C 1.46496 * 120.00347 * 300.00410 * 9 2 1 11 11 C 1.34784 * 119.99570 * 120.00016 * 9 2 1 12 12 O 1.21437 * 119.99708 * 356.44833 * 11 9 2 13 13 C 1.48833 * 119.99745 * 176.44615 * 11 9 2 14 14 O 1.21501 * 119.99989 * 5.93959 * 13 11 9 15 15 N 1.34770 * 119.99700 * 185.93964 * 13 11 9 16 16 C 1.36128 * 119.99855 * 179.97438 * 15 13 11 17 17 H 1.08003 * 119.99643 * 0.02562 * 16 15 13 18 18 C 1.39583 * 120.00004 * 179.97438 * 16 15 13 19 19 N 1.31024 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47099 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47068 * 120.00116 * 20 18 16 23 23 H 1.48502 * 109.47150 * 240.00231 * 20 18 16 24 24 H 1.08998 * 109.46927 * 60.00224 * 1 2 3 25 25 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47051 * 300.00141 * 1 2 3 27 27 H 1.08002 * 126.57313 * 0.28480 * 5 4 2 28 28 H 1.08003 * 126.57460 * 180.02562 * 6 5 4 29 29 H 1.07998 * 125.78934 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47341 * 96.03580 * 10 9 2 31 31 H 1.09001 * 109.46902 * 216.03743 * 10 9 2 32 32 H 1.08994 * 109.47222 * 336.03542 * 10 9 2 33 33 H 0.96997 * 120.00409 * 0.02562 * 15 13 11 34 34 H 0.97001 * 119.99350 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4732 -0.1190 2.3554 6 6 2.8442 -1.1541 3.2440 7 6 2.6074 -2.3162 2.6093 8 8 2.1162 -2.0413 1.3899 9 7 2.0184 -0.6908 -1.1961 10 6 1.6644 -2.0933 -1.4278 11 6 2.7933 -0.0358 -2.0833 12 8 3.0335 1.1440 -1.9249 13 6 3.3545 -0.7585 -3.2571 14 8 3.0283 -1.9084 -3.4754 15 7 4.2246 -0.1375 -4.0778 16 6 4.7383 -0.7986 -5.1511 17 1 4.4483 -1.8208 -5.3451 18 6 5.6390 -0.1553 -6.0015 19 7 5.9904 1.0849 -5.7664 20 14 6.3434 -1.0623 -7.4747 21 1 5.7922 -2.4405 -7.5174 22 1 5.9762 -0.3430 -8.7209 23 1 7.8224 -1.1248 -7.3567 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 2.5286 0.9428 2.5450 28 1 3.2408 -1.0347 4.2415 29 1 2.7828 -3.3029 3.0119 30 1 0.7989 -2.1453 -2.0884 31 1 2.5061 -2.6087 -1.8905 32 1 1.4250 -2.5695 -0.4771 33 1 4.4853 0.7804 -3.9034 34 1 6.6166 1.5318 -6.3572 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706375439.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:17 Heat of formation + Delta-G solvation = -61.589270 kcal Electronic energy + Delta-G solvation = -20187.537801 eV Core-core repulsion = 16894.215883 eV Total energy + Delta-G solvation = -3293.321918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.56042 -41.51479 -39.27927 -37.53566 -36.18981 -34.12373 -33.51329 -32.75720 -29.48218 -28.18254 -27.66497 -25.57079 -23.49020 -22.70295 -21.41009 -20.70405 -20.04015 -18.52589 -18.14803 -17.85511 -17.09908 -16.99062 -16.71645 -16.06860 -15.78784 -15.31123 -14.83921 -14.64197 -14.33136 -14.06387 -13.89443 -13.70636 -13.54231 -13.30530 -13.07514 -12.97949 -12.84342 -12.55126 -12.46822 -12.07777 -12.04822 -11.65147 -10.85113 -10.28637 -10.07023 -9.80165 -9.42200 -8.65854 -6.10257 0.53016 0.74293 1.40838 1.45397 1.53517 1.61978 1.79317 2.04513 2.27486 2.34221 3.06112 3.14342 3.54708 3.91842 3.99595 4.09342 4.18644 4.26533 4.34994 4.65911 4.71442 4.77200 4.88754 4.99403 5.03414 5.14768 5.24250 5.28483 5.39392 5.60306 5.68572 5.98959 6.20959 6.31791 6.72235 6.94213 7.27045 7.79723 8.50261 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032986 B = 0.004447 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.636227 B = 6294.716924 C = 6353.700357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.211 3.789 3 H 0.116 0.884 4 C -0.041 4.041 5 C -0.207 4.207 6 C -0.224 4.224 7 C -0.043 4.043 8 O -0.183 6.183 9 N -0.582 5.582 10 C 0.077 3.923 11 C 0.516 3.484 12 O -0.565 6.565 13 C 0.391 3.609 14 O -0.599 6.599 15 N -0.511 5.511 16 C -0.342 4.342 17 H 0.101 0.899 18 C -0.005 4.005 19 N -0.897 5.897 20 Si 1.011 2.989 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.267 1.267 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.160 0.840 28 H 0.172 0.828 29 H 0.237 0.763 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 -4.004 14.561 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.108 3.892 3 H 0.134 0.866 4 C -0.092 4.092 5 C -0.226 4.226 6 C -0.243 4.243 7 C -0.110 4.110 8 O -0.080 6.080 9 N -0.315 5.315 10 C -0.064 4.064 11 C 0.301 3.699 12 O -0.445 6.445 13 C 0.176 3.824 14 O -0.488 6.488 15 N -0.145 5.145 16 C -0.472 4.472 17 H 0.119 0.881 18 C -0.209 4.209 19 N -0.535 5.535 20 Si 0.831 3.169 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.192 1.192 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.115 0.885 27 H 0.177 0.823 28 H 0.190 0.810 29 H 0.253 0.747 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.664 -4.192 14.203 16.674 hybrid contribution 0.666 0.477 -0.370 0.899 sum -6.998 -3.715 13.833 15.941 Atomic orbital electron populations 1.22118 0.90677 1.03852 1.04026 1.19865 0.96440 0.95541 0.77331 0.86591 1.22704 1.06836 0.81318 0.98317 1.21905 1.04987 1.01794 0.93962 1.22150 1.07615 0.91723 1.02799 1.24908 1.01202 1.02124 0.82726 1.84062 1.65406 1.24312 1.34186 1.47761 1.48517 1.14068 1.21114 1.22333 1.02853 0.79357 1.01889 1.20291 0.78938 0.86450 0.84213 1.90655 1.60866 1.16410 1.76538 1.19440 0.87305 0.88180 0.87440 1.90463 1.65045 1.18066 1.75253 1.41677 1.35584 1.15129 1.22133 1.20031 1.24455 0.99514 1.03200 0.88128 1.26545 0.95958 0.96411 1.01999 1.69566 1.32143 1.12224 1.39550 0.84632 0.78009 0.78302 0.75918 1.18659 1.19119 1.19162 0.91415 0.91155 0.88535 0.82281 0.81045 0.74657 0.92300 0.89453 0.89425 0.76627 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.18 71.98 0.66 -2.65 16 2 C 0.21 6.21 3.10 44.25 0.14 6.34 16 3 H 0.12 3.64 6.89 -2.39 -0.02 3.62 16 4 C -0.04 -1.13 6.05 24.83 0.15 -0.98 16 5 C -0.21 -4.99 10.80 22.19 0.24 -4.75 16 6 C -0.22 -4.51 10.91 22.19 0.24 -4.27 16 7 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 8 O -0.18 -4.84 8.10 -2.55 -0.02 -4.86 16 9 N -0.58 -21.37 2.75 -829.08 -2.28 -23.65 16 10 C 0.08 2.61 8.41 127.77 1.07 3.69 16 11 C 0.52 23.49 7.72 87.08 0.67 24.16 16 12 O -0.57 -27.25 15.81 -3.52 -0.06 -27.31 16 13 C 0.39 20.31 7.70 87.08 0.67 20.98 16 14 O -0.60 -31.97 12.69 -3.72 -0.05 -32.02 16 15 N -0.51 -28.34 5.24 -308.87 -1.62 -29.96 16 16 C -0.34 -19.26 9.67 84.35 0.82 -18.44 16 17 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 18 C -0.01 -0.26 5.51 85.14 0.47 0.21 16 19 N -0.90 -48.44 13.03 21.77 0.28 -48.15 16 20 Si 1.01 40.77 29.56 68.60 2.03 42.79 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.48 7.67 -2.39 -0.02 1.47 16 26 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.24 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 3.54 5.36 -2.53 -0.01 3.52 16 32 H 0.09 2.51 5.56 -2.39 -0.01 2.49 16 33 H 0.40 22.47 7.36 -92.71 -0.68 21.79 16 34 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 Total: -1.00 -67.01 296.53 4.68 -62.33 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.46 Total: 36.58 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 5.94 Total: 24.25 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -3.62 Total: -101.76 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -0.12 Total: -64.19 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -67.01 4.68 -62.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706375439.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.738 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds