Wall clock time and date at job start Mon Mar 30 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00051 * 2 1 4 4 C 1.53000 * 109.47216 * 90.00267 * 3 2 1 5 5 N 1.46501 * 109.47216 * 179.97438 * 4 3 2 6 6 C 1.34950 * 126.03509 * 125.00158 * 5 4 3 7 7 C 1.35315 * 107.74389 * 179.97438 * 6 5 4 8 8 C 1.39872 * 107.91844 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20297 * 359.73664 * 8 7 6 10 10 C 1.34780 * 120.00099 * 180.02562 * 2 1 3 11 11 O 1.21437 * 120.00047 * 185.35060 * 10 2 1 12 12 C 1.48830 * 119.99714 * 5.34555 * 10 2 1 13 13 O 1.21503 * 120.00250 * 5.98941 * 12 10 2 14 14 N 1.34781 * 119.99573 * 185.98783 * 12 10 2 15 15 C 1.36125 * 119.99742 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99725 * 0.02562 * 15 14 12 17 17 C 1.39578 * 120.00091 * 180.02562 * 15 14 12 18 18 N 1.31021 * 120.00259 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47013 * 60.00035 * 19 17 15 21 21 H 1.48497 * 109.46856 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47070 * 299.99849 * 19 17 15 23 23 H 1.08996 * 109.46985 * 95.24887 * 1 2 3 24 24 H 1.08998 * 109.47082 * 215.25125 * 1 2 3 25 25 H 1.09003 * 109.46867 * 335.25302 * 1 2 3 26 26 H 1.08996 * 109.47117 * 329.99875 * 3 2 1 27 27 H 1.09004 * 109.47269 * 210.00242 * 3 2 1 28 28 H 1.09005 * 109.47268 * 59.99974 * 4 3 2 29 29 H 1.09004 * 109.46981 * 300.00151 * 4 3 2 30 30 H 1.07998 * 126.12579 * 359.97438 * 6 5 4 31 31 H 1.07996 * 126.03953 * 179.97438 * 7 6 5 32 32 H 1.08005 * 125.89183 * 180.02562 * 8 7 6 33 33 H 0.96996 * 120.00395 * 359.97438 * 14 12 10 34 34 H 0.96997 * 120.00600 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 7 3.1856 2.9788 1.4425 6 6 2.8088 4.1135 2.0684 7 6 3.7532 5.0516 1.8253 8 6 4.7406 4.4705 1.0229 9 7 4.4040 3.2264 0.7973 10 6 2.1389 -1.1672 -0.0005 11 8 3.3493 -1.1695 0.0975 12 6 1.3996 -2.4532 -0.1212 13 8 0.2023 -2.4486 -0.3283 14 7 2.0582 -3.6230 -0.0008 15 6 1.3821 -4.7992 -0.1116 16 1 0.3180 -4.7951 -0.2965 17 6 2.0640 -6.0107 0.0136 18 7 3.3549 -6.0157 0.2374 19 14 1.1361 -7.6248 -0.1378 20 1 0.5016 -7.7072 -1.4779 21 1 2.0817 -8.7571 0.0320 22 1 0.0875 -7.6933 0.9114 23 1 -0.3633 -0.0940 -1.0233 24 1 -0.3633 -0.8392 0.5931 25 1 -0.3633 0.9333 0.4302 26 1 1.6084 2.0283 -0.5138 27 1 3.1499 1.1384 -0.5139 28 1 3.0417 0.9507 1.9563 29 1 1.5001 1.8407 1.9564 30 1 1.9139 4.2485 2.6576 31 1 3.7455 6.0694 2.1862 32 1 5.6298 4.9624 0.6571 33 1 3.0140 -3.6267 0.1642 34 1 3.8289 -6.8576 0.3240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707569517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:33 Heat of formation + Delta-G solvation = 22.867164 kcal Electronic energy + Delta-G solvation = -19550.107224 eV Core-core repulsion = 16292.740363 eV Total energy + Delta-G solvation = -3257.366861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18333 -39.77658 -37.39538 -35.83442 -34.32131 -33.22048 -31.44992 -30.28138 -28.86714 -26.52636 -25.74220 -24.26060 -21.86817 -21.14909 -20.60137 -18.94439 -18.14720 -17.38446 -16.71159 -16.09374 -15.56654 -15.20041 -14.96771 -14.37266 -14.21592 -13.95414 -13.72219 -13.25308 -13.19494 -12.86423 -12.71005 -12.38102 -12.29004 -11.93850 -11.73056 -11.30165 -11.19825 -10.63816 -10.59542 -10.46277 -10.31329 -9.73811 -9.55020 -8.78413 -8.42852 -8.25189 -8.14107 -6.71315 -4.03749 1.83832 2.31160 2.39182 2.78584 3.12208 3.13872 3.15196 3.28428 4.00236 4.17554 4.43786 4.68272 4.75001 4.89516 4.99748 5.13701 5.15400 5.40217 5.45486 5.59446 5.69936 5.81486 5.90942 5.99824 6.05337 6.34700 6.56087 6.74862 6.94400 7.26438 7.50523 7.65887 7.72316 8.23897 8.50751 8.90388 9.26460 9.79552 10.43229 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043142 B = 0.003667 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.856812 B = 7633.770173 C = 8080.378852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.603 5.603 3 C 0.110 3.890 4 C 0.117 3.883 5 N -0.365 5.365 6 C 0.052 3.948 7 C -0.279 4.279 8 C 0.038 3.962 9 N -0.287 5.287 10 C 0.512 3.488 11 O -0.538 6.538 12 C 0.392 3.608 13 O -0.591 6.591 14 N -0.496 5.496 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.032 3.968 18 N -0.867 5.867 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.172 0.828 31 H 0.145 0.855 32 H 0.181 0.819 33 H 0.405 0.595 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 16.435 3.436 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.338 5.338 3 C -0.015 4.015 4 C -0.006 4.006 5 N -0.148 5.148 6 C -0.095 4.095 7 C -0.309 4.309 8 C -0.148 4.148 9 N -0.109 5.109 10 C 0.298 3.702 11 O -0.414 6.414 12 C 0.177 3.823 13 O -0.480 6.480 14 N -0.130 5.130 15 C -0.437 4.437 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.505 5.505 19 Si 0.766 3.234 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 H 0.076 0.924 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.189 0.811 31 H 0.163 0.837 32 H 0.198 0.802 33 H 0.240 0.760 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.122 15.024 2.806 15.430 hybrid contribution -0.080 0.149 0.490 0.518 sum -2.201 15.172 3.296 15.681 Atomic orbital electron populations 1.22092 0.77650 1.02283 1.03383 1.47558 1.07965 1.04360 1.73966 1.21557 0.99341 0.85640 0.94925 1.22209 0.95842 0.82454 1.00047 1.48712 1.17038 1.09996 1.39067 1.22597 1.00894 0.86759 0.99250 1.21487 0.97911 1.01431 1.10072 1.23922 1.00221 0.91953 0.98705 1.77481 0.97221 1.17452 1.18716 1.20880 0.87355 0.85727 0.76228 1.90719 1.14327 1.87536 1.48809 1.18823 0.87964 0.84076 0.91455 1.90538 1.14049 1.86106 1.57317 1.41578 1.11850 1.04202 1.55393 1.19839 0.95495 0.81865 1.46489 0.86931 1.25606 0.95660 1.00515 0.95790 1.69476 1.07813 1.29458 1.43729 0.85768 0.78904 0.79260 0.79510 1.19346 1.20568 1.19345 0.92387 0.88046 0.93158 0.90255 0.88549 0.88938 0.88476 0.81078 0.83707 0.80167 0.76015 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 9.23 59.85 0.55 1.86 16 2 N -0.60 -10.27 2.87 -182.32 -0.52 -10.79 16 3 C 0.11 1.58 5.53 -4.04 -0.02 1.56 16 4 C 0.12 1.49 6.83 -4.04 -0.03 1.46 16 5 N -0.37 -4.71 3.68 -61.36 -0.23 -4.94 16 6 C 0.05 0.52 11.45 -17.22 -0.20 0.32 16 7 C -0.28 -2.77 10.80 -40.01 -0.43 -3.20 16 8 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 9 N -0.29 -4.22 12.42 30.63 0.38 -3.84 16 10 C 0.51 11.04 7.70 -11.87 -0.09 10.95 16 11 O -0.54 -12.67 16.12 5.42 0.09 -12.58 16 12 C 0.39 9.61 7.63 -11.87 -0.09 9.52 16 13 O -0.59 -14.89 12.93 5.36 0.07 -14.82 16 14 N -0.50 -13.06 5.24 -11.59 -0.06 -13.12 16 15 C -0.31 -8.26 9.67 -15.15 -0.15 -8.41 16 16 H 0.11 3.07 7.15 -52.49 -0.38 2.70 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.03 13.03 55.53 0.72 -22.31 16 19 Si 0.94 19.77 29.56 -169.99 -5.02 14.75 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 24 H 0.10 1.75 5.95 -51.93 -0.31 1.44 16 25 H 0.05 0.54 8.03 -51.93 -0.42 0.13 16 26 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 27 H 0.10 1.65 7.50 -51.93 -0.39 1.26 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.40 10.82 7.36 -40.82 -0.30 10.52 16 34 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -31.62 304.41 -4.62 -36.24 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -3.88 Total: 11.83 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -0.76 Total: 15.00 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.29 Total: -55.00 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: 0.16 Total: -27.41 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.62 -4.62 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707569517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.106 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds