Wall clock time and date at job start Mon Mar 30 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00051 * 2 1 4 4 C 1.53000 * 109.47216 * 90.00267 * 3 2 1 5 5 N 1.46501 * 109.47216 * 179.97438 * 4 3 2 6 6 C 1.34950 * 126.03509 * 125.00158 * 5 4 3 7 7 C 1.35315 * 107.74389 * 179.97438 * 6 5 4 8 8 C 1.39872 * 107.91844 * 0.02562 * 7 6 5 9 9 N 1.30837 * 108.20297 * 359.73664 * 8 7 6 10 10 C 1.34780 * 120.00099 * 180.02562 * 2 1 3 11 11 O 1.21437 * 120.00047 * 185.35060 * 10 2 1 12 12 C 1.48830 * 119.99714 * 5.34555 * 10 2 1 13 13 O 1.21503 * 120.00250 * 5.98941 * 12 10 2 14 14 N 1.34781 * 119.99573 * 185.98783 * 12 10 2 15 15 C 1.36125 * 119.99742 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99725 * 0.02562 * 15 14 12 17 17 C 1.39578 * 120.00091 * 180.02562 * 15 14 12 18 18 N 1.31021 * 120.00259 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47013 * 60.00035 * 19 17 15 21 21 H 1.48497 * 109.46856 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47070 * 299.99849 * 19 17 15 23 23 H 1.08996 * 109.46985 * 95.24887 * 1 2 3 24 24 H 1.08998 * 109.47082 * 215.25125 * 1 2 3 25 25 H 1.09003 * 109.46867 * 335.25302 * 1 2 3 26 26 H 1.08996 * 109.47117 * 329.99875 * 3 2 1 27 27 H 1.09004 * 109.47269 * 210.00242 * 3 2 1 28 28 H 1.09005 * 109.47268 * 59.99974 * 4 3 2 29 29 H 1.09004 * 109.46981 * 300.00151 * 4 3 2 30 30 H 1.07998 * 126.12579 * 359.97438 * 6 5 4 31 31 H 1.07996 * 126.03953 * 179.97438 * 7 6 5 32 32 H 1.08005 * 125.89183 * 180.02562 * 8 7 6 33 33 H 0.96996 * 120.00395 * 359.97438 * 14 12 10 34 34 H 0.96997 * 120.00600 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 7 3.1856 2.9788 1.4425 6 6 2.8088 4.1135 2.0684 7 6 3.7532 5.0516 1.8253 8 6 4.7406 4.4705 1.0229 9 7 4.4040 3.2264 0.7973 10 6 2.1389 -1.1672 -0.0005 11 8 3.3493 -1.1695 0.0975 12 6 1.3996 -2.4532 -0.1212 13 8 0.2023 -2.4486 -0.3283 14 7 2.0582 -3.6230 -0.0008 15 6 1.3821 -4.7992 -0.1116 16 1 0.3180 -4.7951 -0.2965 17 6 2.0640 -6.0107 0.0136 18 7 3.3549 -6.0157 0.2374 19 14 1.1361 -7.6248 -0.1378 20 1 0.5016 -7.7072 -1.4779 21 1 2.0817 -8.7571 0.0320 22 1 0.0875 -7.6933 0.9114 23 1 -0.3633 -0.0940 -1.0233 24 1 -0.3633 -0.8392 0.5931 25 1 -0.3633 0.9333 0.4302 26 1 1.6084 2.0283 -0.5138 27 1 3.1499 1.1384 -0.5139 28 1 3.0417 0.9507 1.9563 29 1 1.5001 1.8407 1.9564 30 1 1.9139 4.2485 2.6576 31 1 3.7455 6.0694 2.1862 32 1 5.6298 4.9624 0.6571 33 1 3.0140 -3.6267 0.1642 34 1 3.8289 -6.8576 0.3240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707569517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:33 Heat of formation + Delta-G solvation = -0.246311 kcal Electronic energy + Delta-G solvation = -19551.109499 eV Core-core repulsion = 16292.740363 eV Total energy + Delta-G solvation = -3258.369136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.05894 -41.47351 -39.24534 -37.39268 -36.15146 -34.38516 -33.43153 -31.16112 -29.92628 -28.16478 -27.32970 -25.65530 -23.40906 -21.95897 -21.57782 -20.73143 -20.00329 -18.46439 -18.29896 -17.68620 -17.00099 -16.77817 -16.45691 -15.84797 -15.55962 -15.38760 -14.78889 -14.75240 -14.61151 -14.02852 -13.97746 -13.68993 -13.58213 -13.37234 -13.18982 -12.90736 -12.56913 -12.42356 -12.14313 -12.11039 -11.61994 -11.50804 -10.50665 -10.28324 -10.03302 -9.91883 -9.46796 -8.65739 -6.10451 0.55007 1.01692 1.30543 1.42876 1.48373 1.55146 1.89144 2.00475 2.27391 2.32523 3.06204 3.14971 3.50372 3.76508 3.93442 4.03186 4.10421 4.20597 4.32081 4.45840 4.61832 4.78069 4.85209 4.92754 5.07945 5.18855 5.25201 5.40383 5.67619 5.77891 5.97123 6.15504 6.30610 6.72608 6.81659 6.94287 7.27131 7.78987 8.49926 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.043142 B = 0.003667 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.856812 B = 7633.770173 C = 8080.378852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.587 5.587 3 C 0.114 3.886 4 C 0.125 3.875 5 N -0.380 5.380 6 C 0.057 3.943 7 C -0.283 4.283 8 C 0.035 3.965 9 N -0.349 5.349 10 C 0.512 3.488 11 O -0.565 6.565 12 C 0.392 3.608 13 O -0.599 6.599 14 N -0.513 5.513 15 C -0.343 4.343 16 H 0.103 0.897 17 C -0.007 4.007 18 N -0.899 5.899 19 Si 1.010 2.990 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.261 1.261 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.212 0.788 31 H 0.173 0.827 32 H 0.203 0.797 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 18.229 4.121 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.320 5.320 3 C -0.009 4.009 4 C 0.003 3.997 5 N -0.164 5.164 6 C -0.089 4.089 7 C -0.312 4.312 8 C -0.151 4.151 9 N -0.171 5.171 10 C 0.297 3.703 11 O -0.444 6.444 12 C 0.177 3.823 13 O -0.488 6.488 14 N -0.147 5.147 15 C -0.473 4.473 16 H 0.121 0.879 17 C -0.211 4.211 18 N -0.537 5.537 19 Si 0.831 3.169 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.186 1.186 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.229 0.771 31 H 0.191 0.809 32 H 0.219 0.781 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.726 16.874 3.493 17.630 hybrid contribution 0.392 -0.171 0.284 0.513 sum -3.334 16.703 3.777 17.446 Atomic orbital electron populations 1.22188 0.75809 1.04252 1.03230 1.47577 1.09051 1.03891 1.71465 1.21668 0.98091 0.84571 0.96609 1.22044 0.97046 0.82269 0.98362 1.48701 1.16957 1.10599 1.40100 1.23322 1.01930 0.85410 0.98212 1.21902 0.97182 1.02723 1.09418 1.24470 1.01147 0.91295 0.98174 1.77442 0.99012 1.19394 1.21220 1.20375 0.86861 0.86170 0.76861 1.90711 1.15250 1.87933 1.50519 1.19429 0.88057 0.84888 0.89921 1.90524 1.14474 1.86741 1.57038 1.41685 1.11539 1.04856 1.56657 1.19960 0.95368 0.82950 1.48972 0.87949 1.26563 0.96456 1.03543 0.94505 1.69557 1.09180 1.30700 1.44222 0.84743 0.77771 0.74736 0.79630 1.18877 1.19389 1.18593 0.92694 0.90499 0.87607 0.86974 0.91722 0.92027 0.84509 0.77144 0.80923 0.78070 0.76762 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.36 9.23 127.77 1.18 3.54 16 2 N -0.59 -19.35 2.87 -849.06 -2.44 -21.79 16 3 C 0.11 3.12 5.53 86.38 0.48 3.60 16 4 C 0.13 2.97 6.83 86.38 0.59 3.56 16 5 N -0.38 -9.12 3.68 -348.05 -1.28 -10.39 16 6 C 0.06 0.94 11.45 83.54 0.96 1.90 16 7 C -0.28 -4.75 10.80 21.99 0.24 -4.51 16 8 C 0.03 0.75 12.03 85.24 1.02 1.77 16 9 N -0.35 -10.11 12.42 -57.02 -0.71 -10.81 16 10 C 0.51 22.53 7.70 87.08 0.67 23.20 16 11 O -0.57 -27.66 16.12 -3.52 -0.06 -27.72 16 12 C 0.39 19.74 7.63 87.08 0.66 20.41 16 13 O -0.60 -30.62 12.93 -3.73 -0.05 -30.67 16 14 N -0.51 -28.10 5.24 -308.87 -1.62 -29.72 16 15 C -0.34 -19.07 9.67 84.35 0.82 -18.25 16 16 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 17 C -0.01 -0.35 5.51 85.14 0.47 0.12 16 18 N -0.90 -48.73 13.03 21.76 0.28 -48.45 16 19 Si 1.01 40.54 29.56 68.60 2.03 42.56 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 24 H 0.08 2.55 5.95 -2.39 -0.01 2.54 16 25 H 0.11 1.77 8.03 -2.39 -0.02 1.75 16 26 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.06 2.24 7.50 -2.38 -0.02 2.22 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.14 2.09 8.07 -2.38 -0.02 2.07 16 30 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.40 22.39 7.36 -92.71 -0.68 21.71 16 34 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 Total: -1.00 -72.15 304.41 3.69 -68.46 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.45 Total: 33.19 kcal Atomic # 6 Polarization: 28.26 SS G_CDS: 7.09 Total: 35.34 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -5.76 Total: -121.17 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -0.10 Total: -58.39 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -72.15 3.69 -68.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707569517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.211 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds