Wall clock time and date at job start Mon Mar 30 2020 04:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46033 * 288.34012 * 3 2 1 5 5 C 1.53036 * 109.45999 * 48.31424 * 3 2 1 6 6 C 1.53191 * 109.31307 * 58.64167 * 5 3 2 7 7 N 1.46930 * 108.77794 * 54.63294 * 6 5 3 8 8 C 1.34772 * 120.63108 * 126.36733 * 7 6 5 9 9 O 1.21439 * 120.00170 * 0.73429 * 8 7 6 10 10 C 1.48834 * 119.99953 * 180.45836 * 8 7 6 11 11 O 1.21501 * 119.99676 * 353.61752 * 10 8 7 12 12 N 1.34770 * 120.00074 * 173.61533 * 10 8 7 13 13 C 1.36122 * 120.00205 * 180.02562 * 12 10 8 14 14 H 1.07996 * 119.99627 * 359.97438 * 13 12 10 15 15 C 1.39584 * 120.00356 * 179.97438 * 13 12 10 16 16 N 1.31020 * 119.99761 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00319 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46688 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47389 * 119.99890 * 17 15 13 20 20 H 1.48497 * 109.46948 * 240.00091 * 17 15 13 21 21 C 1.46927 * 118.73462 * 306.64548 * 7 6 5 22 22 C 1.52759 * 109.00917 * 53.31036 * 21 7 6 23 23 H 4.38429 * 5.44558 * 180.02562 * 4 1 2 24 24 H 0.96703 * 114.00322 * 299.97664 * 4 3 2 25 25 H 1.08995 * 109.49828 * 298.68852 * 5 3 2 26 26 H 1.09003 * 109.52335 * 178.60767 * 5 3 2 27 27 H 1.08999 * 109.58476 * 294.84657 * 6 5 3 28 28 H 1.08996 * 109.70226 * 174.48973 * 6 5 3 29 29 H 0.97001 * 119.99899 * 359.97438 * 12 10 8 30 30 H 0.96997 * 120.00114 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.58469 * 173.14197 * 21 7 6 32 32 H 1.08998 * 109.58911 * 293.56605 * 21 7 6 33 33 H 1.09000 * 109.56279 * 185.55141 * 22 21 7 34 34 H 1.08998 * 109.38987 * 65.51714 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 -0.4231 1.2789 5 6 3.1563 -0.9587 -1.0776 6 6 2.6155 -0.5214 -2.4425 7 7 2.9775 0.8849 -2.6662 8 6 3.6310 1.2562 -3.7849 9 8 3.9145 0.4274 -4.6259 10 6 3.9999 2.6831 -3.9923 11 8 3.6122 3.5303 -3.2124 12 7 4.7638 3.0355 -5.0452 13 6 5.1016 4.3404 -5.2347 14 1 4.7571 5.0935 -4.5415 15 6 5.8933 4.7053 -6.3248 16 7 6.3118 3.7916 -7.1655 17 14 6.3563 6.4962 -6.5852 18 1 5.7618 7.3232 -5.5046 19 1 7.8346 6.6343 -6.5586 20 1 5.8399 6.9548 -7.8998 21 6 2.6190 1.8777 -1.6442 22 6 3.1549 1.4144 -0.2908 23 1 -1.0500 -0.0002 0.0001 24 1 2.8369 0.1402 2.0113 25 1 2.8129 -1.9694 -0.8571 26 1 4.2460 -0.9405 -1.0952 27 1 1.5307 -0.6261 -2.4563 28 1 3.0524 -1.1402 -3.2263 29 1 5.0736 2.3590 -5.6676 30 1 6.8622 4.0450 -7.9229 31 1 3.0603 2.8411 -1.8999 32 1 1.5345 1.9727 -1.5915 33 1 2.8105 2.0928 0.4898 34 1 4.2446 1.4111 -0.3150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707973957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:51 Heat of formation + Delta-G solvation = -45.632297 kcal Electronic energy + Delta-G solvation = -20268.387057 eV Core-core repulsion = 16975.757086 eV Total energy + Delta-G solvation = -3292.629972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28190 -38.72090 -37.23115 -35.75131 -34.35264 -32.89210 -31.60719 -31.08479 -30.76994 -26.31749 -24.95069 -23.45944 -22.60777 -21.17123 -19.36410 -18.48863 -18.03798 -16.85247 -16.39676 -16.13515 -15.25064 -15.07889 -14.94900 -14.56420 -14.31339 -13.93422 -13.63616 -13.36893 -13.09783 -12.48743 -12.18041 -11.86986 -11.73053 -11.57361 -11.29833 -11.19846 -11.00926 -10.71646 -10.62658 -10.52382 -10.45817 -10.26178 -9.88447 -9.75839 -8.38241 -8.31479 -7.85126 -6.75912 -4.08727 2.36704 2.62163 2.69020 3.09495 3.10928 3.17060 3.28084 3.97730 4.06941 4.11239 4.23198 4.67637 4.78717 4.97466 5.10328 5.17886 5.37599 5.50072 5.62645 5.68439 5.79992 5.82955 5.91131 6.00475 6.07773 6.33256 6.62006 6.95565 7.24043 7.42449 7.46054 7.62339 7.77478 8.27984 8.54435 8.87737 9.21971 9.75870 10.38315 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.004524 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.425430 B = 6187.859902 C = 6475.943757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.204 4.204 3 C 0.240 3.760 4 O -0.551 6.551 5 C -0.113 4.113 6 C 0.110 3.890 7 N -0.591 5.591 8 C 0.516 3.484 9 O -0.548 6.548 10 C 0.391 3.609 11 O -0.583 6.583 12 N -0.489 5.489 13 C -0.307 4.307 14 H 0.116 0.884 15 C 0.033 3.967 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.051 3.949 22 C -0.150 4.150 23 H 0.217 0.783 24 H 0.379 0.621 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.406 0.594 30 H 0.282 0.718 31 H 0.180 0.820 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -5.358 11.398 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.205 4.205 3 C 0.200 3.800 4 O -0.357 6.357 5 C -0.151 4.151 6 C -0.013 4.013 7 N -0.325 5.325 8 C 0.303 3.697 9 O -0.426 6.426 10 C 0.177 3.823 11 O -0.475 6.475 12 N -0.122 5.122 13 C -0.438 4.438 14 H 0.133 0.867 15 C -0.175 4.175 16 N -0.501 5.501 17 Si 0.765 3.235 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.070 4.070 22 C -0.189 4.189 23 H 0.234 0.766 24 H 0.226 0.774 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.242 0.758 30 H 0.092 0.908 31 H 0.195 0.805 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.366 -5.747 10.861 13.840 hybrid contribution -0.260 0.614 -0.029 0.668 sum -6.626 -5.133 10.833 13.697 Atomic orbital electron populations 1.24984 0.95885 1.00709 0.98949 1.23836 0.95001 1.00305 1.01326 1.18204 0.81885 0.95374 0.84543 1.86595 1.76100 1.56981 1.15976 1.21835 1.02291 0.98503 0.92515 1.21557 0.99783 0.83555 0.96362 1.47832 1.56848 1.07822 1.20027 1.20540 0.77505 0.90411 0.81264 1.90678 1.54727 1.53943 1.43221 1.18880 0.88985 0.87700 0.86757 1.90009 1.60862 1.50934 1.45648 1.41585 1.39145 1.10108 1.21321 1.19979 1.29166 0.84310 1.10298 0.86658 1.25633 0.95844 1.00998 0.95028 1.69491 1.32438 1.34608 1.13603 0.85644 0.78449 0.80597 0.78808 1.18608 1.20205 1.20218 1.23344 1.00675 0.98092 0.84922 1.22540 1.02544 0.94386 0.99412 0.76581 0.77356 0.89995 0.89745 0.91636 0.88306 0.75839 0.90783 0.80512 0.92667 0.90428 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.20 -2.57 9.68 -37.12 -0.36 -2.93 16 3 C 0.24 3.11 1.09 -93.37 -0.10 3.00 16 4 O -0.55 -6.56 12.95 -35.23 -0.46 -7.01 16 5 C -0.11 -1.52 5.25 -26.61 -0.14 -1.66 16 6 C 0.11 1.68 6.08 -3.71 -0.02 1.66 16 7 N -0.59 -10.74 2.98 -173.77 -0.52 -11.26 16 8 C 0.52 11.33 7.74 -11.88 -0.09 11.24 16 9 O -0.55 -12.91 15.90 5.42 0.09 -12.82 16 10 C 0.39 9.52 7.73 -11.88 -0.09 9.43 16 11 O -0.58 -14.48 12.57 5.36 0.07 -14.41 16 12 N -0.49 -12.68 5.24 -11.59 -0.06 -12.74 16 13 C -0.31 -8.13 9.67 -15.15 -0.15 -8.27 16 14 H 0.12 3.09 7.15 -52.49 -0.38 2.72 16 15 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 16 N -0.86 -22.53 13.03 55.53 0.72 -21.81 16 17 Si 0.94 19.40 29.56 -169.99 -5.02 14.37 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.05 0.84 5.82 -3.93 -0.02 0.82 16 22 C -0.15 -2.05 5.21 -26.83 -0.14 -2.19 16 23 H 0.22 1.58 7.80 -54.09 -0.42 1.16 16 24 H 0.38 3.05 9.03 45.56 0.41 3.46 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 0.94 7.38 -51.93 -0.38 0.55 16 28 H 0.10 1.56 7.01 -51.93 -0.36 1.20 16 29 H 0.41 10.68 7.37 -40.82 -0.30 10.38 16 30 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 31 H 0.18 3.49 3.82 -56.96 -0.22 3.27 16 32 H 0.05 0.88 7.38 -51.93 -0.38 0.50 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -29.81 294.38 -4.25 -34.05 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -2.86 Total: 16.86 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.64 Total: 10.33 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.15 Total: -45.81 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.30 Total: -34.25 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.81 -4.25 -34.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707973957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.579 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds