Wall clock time and date at job start Mon Mar 30 2020 04:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42898 * 109.46033 * 288.34012 * 3 2 1 5 5 C 1.53036 * 109.45999 * 48.31424 * 3 2 1 6 6 C 1.53191 * 109.31307 * 58.64167 * 5 3 2 7 7 N 1.46930 * 108.77794 * 54.63294 * 6 5 3 8 8 C 1.34772 * 120.63108 * 126.36733 * 7 6 5 9 9 O 1.21439 * 120.00170 * 0.73429 * 8 7 6 10 10 C 1.48834 * 119.99953 * 180.45836 * 8 7 6 11 11 O 1.21501 * 119.99676 * 353.61752 * 10 8 7 12 12 N 1.34770 * 120.00074 * 173.61533 * 10 8 7 13 13 C 1.36122 * 120.00205 * 180.02562 * 12 10 8 14 14 H 1.07996 * 119.99627 * 359.97438 * 13 12 10 15 15 C 1.39584 * 120.00356 * 179.97438 * 13 12 10 16 16 N 1.31020 * 119.99761 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00319 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46688 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47389 * 119.99890 * 17 15 13 20 20 H 1.48497 * 109.46948 * 240.00091 * 17 15 13 21 21 C 1.46927 * 118.73462 * 306.64548 * 7 6 5 22 22 C 1.52759 * 109.00917 * 53.31036 * 21 7 6 23 23 H 4.38429 * 5.44558 * 180.02562 * 4 1 2 24 24 H 0.96703 * 114.00322 * 299.97664 * 4 3 2 25 25 H 1.08995 * 109.49828 * 298.68852 * 5 3 2 26 26 H 1.09003 * 109.52335 * 178.60767 * 5 3 2 27 27 H 1.08999 * 109.58476 * 294.84657 * 6 5 3 28 28 H 1.08996 * 109.70226 * 174.48973 * 6 5 3 29 29 H 0.97001 * 119.99899 * 359.97438 * 12 10 8 30 30 H 0.96997 * 120.00114 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.58469 * 173.14197 * 21 7 6 32 32 H 1.08998 * 109.58911 * 293.56605 * 21 7 6 33 33 H 1.09000 * 109.56279 * 185.55141 * 22 21 7 34 34 H 1.08998 * 109.38987 * 65.51714 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 -0.4231 1.2789 5 6 3.1563 -0.9587 -1.0776 6 6 2.6155 -0.5214 -2.4425 7 7 2.9775 0.8849 -2.6662 8 6 3.6310 1.2562 -3.7849 9 8 3.9145 0.4274 -4.6259 10 6 3.9999 2.6831 -3.9923 11 8 3.6122 3.5303 -3.2124 12 7 4.7638 3.0355 -5.0452 13 6 5.1016 4.3404 -5.2347 14 1 4.7571 5.0935 -4.5415 15 6 5.8933 4.7053 -6.3248 16 7 6.3118 3.7916 -7.1655 17 14 6.3563 6.4962 -6.5852 18 1 5.7618 7.3232 -5.5046 19 1 7.8346 6.6343 -6.5586 20 1 5.8399 6.9548 -7.8998 21 6 2.6190 1.8777 -1.6442 22 6 3.1549 1.4144 -0.2908 23 1 -1.0500 -0.0002 0.0001 24 1 2.8369 0.1402 2.0113 25 1 2.8129 -1.9694 -0.8571 26 1 4.2460 -0.9405 -1.0952 27 1 1.5307 -0.6261 -2.4563 28 1 3.0524 -1.1402 -3.2263 29 1 5.0736 2.3590 -5.6676 30 1 6.8622 4.0450 -7.9229 31 1 3.0603 2.8411 -1.8999 32 1 1.5345 1.9727 -1.5915 33 1 2.8105 2.0928 0.4898 34 1 4.2446 1.4111 -0.3150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707973957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:50 Heat of formation + Delta-G solvation = -68.988440 kcal Electronic energy + Delta-G solvation = -20269.399856 eV Core-core repulsion = 16975.757086 eV Total energy + Delta-G solvation = -3293.642770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82843 -40.12494 -38.99663 -37.16175 -36.14779 -33.96004 -33.47061 -32.34781 -31.94792 -28.11749 -26.47972 -24.76119 -24.04675 -22.47615 -21.04912 -20.15131 -19.24697 -18.41699 -17.99080 -17.29412 -16.96473 -16.74421 -16.04985 -15.99016 -15.72172 -15.53425 -15.20352 -14.96853 -14.53837 -14.06149 -13.71174 -13.37363 -13.01018 -12.95685 -12.79774 -12.53625 -12.42493 -12.11854 -12.06307 -11.94717 -11.69055 -11.57452 -11.50624 -10.99723 -10.30128 -9.84460 -9.62926 -8.66795 -6.11498 0.55848 1.42339 1.46982 1.57264 1.70273 1.75469 1.80820 2.27276 2.32911 3.02591 3.12627 3.20415 3.26291 3.64948 3.82175 3.91019 4.00165 4.20911 4.40369 4.47288 4.61704 4.71077 4.81715 4.93624 4.98666 5.11158 5.21390 5.27658 5.47672 5.67631 6.13240 6.35493 6.61104 6.68945 6.77010 6.95416 7.26339 7.79409 8.48858 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.004524 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.425430 B = 6187.859902 C = 6475.943757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.245 4.245 3 C 0.248 3.752 4 O -0.557 6.557 5 C -0.111 4.111 6 C 0.110 3.890 7 N -0.580 5.580 8 C 0.515 3.485 9 O -0.570 6.570 10 C 0.390 3.610 11 O -0.592 6.592 12 N -0.505 5.505 13 C -0.342 4.342 14 H 0.105 0.895 15 C -0.004 4.004 16 N -0.895 5.895 17 Si 1.011 2.989 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.268 1.268 21 C 0.051 3.949 22 C -0.144 4.144 23 H 0.249 0.751 24 H 0.396 0.604 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.400 0.600 30 H 0.289 0.711 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -5.385 12.773 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.246 4.246 3 C 0.207 3.793 4 O -0.365 6.365 5 C -0.149 4.149 6 C -0.011 4.011 7 N -0.312 5.312 8 C 0.301 3.699 9 O -0.450 6.450 10 C 0.176 3.824 11 O -0.483 6.483 12 N -0.137 5.137 13 C -0.472 4.472 14 H 0.122 0.878 15 C -0.208 4.208 16 N -0.532 5.532 17 Si 0.832 3.168 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.193 1.193 21 C -0.069 4.069 22 C -0.182 4.182 23 H 0.265 0.735 24 H 0.246 0.754 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.235 0.765 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.515 -5.782 12.294 15.525 hybrid contribution -0.039 0.539 -0.314 0.625 sum -7.553 -5.243 11.980 15.102 Atomic orbital electron populations 1.25796 0.96670 0.98582 0.96983 1.23865 0.95265 1.02254 1.03201 1.17902 0.82532 0.94029 0.84814 1.86557 1.76318 1.57519 1.16131 1.21791 1.01743 0.99755 0.91629 1.21748 1.00769 0.81215 0.97412 1.47922 1.54864 1.09640 1.18816 1.20132 0.78328 0.89092 0.82375 1.90663 1.56091 1.53918 1.44315 1.19442 0.87977 0.88993 0.85992 1.90062 1.60671 1.51929 1.45637 1.41692 1.40193 1.09954 1.21881 1.20079 1.31157 0.84486 1.11446 0.87760 1.26565 0.94889 1.05382 0.94009 1.69560 1.32891 1.36657 1.14130 0.84624 0.78407 0.74989 0.78818 1.18469 1.19188 1.19280 1.23184 1.01181 0.96559 0.85998 1.22465 1.01790 0.95952 0.98026 0.73494 0.75372 0.88138 0.90619 0.89976 0.89082 0.76526 0.90069 0.83263 0.91459 0.88052 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 19.25 74.32 1.43 -1.52 16 2 C -0.25 -5.42 9.68 31.13 0.30 -5.12 16 3 C 0.25 5.84 1.09 -12.57 -0.01 5.82 16 4 O -0.56 -11.85 12.95 -148.98 -1.93 -13.78 16 5 C -0.11 -2.79 5.25 30.67 0.16 -2.63 16 6 C 0.11 3.22 6.08 86.36 0.53 3.74 16 7 N -0.58 -20.83 2.98 -822.02 -2.45 -23.27 16 8 C 0.52 23.03 7.74 87.08 0.67 23.70 16 9 O -0.57 -27.42 15.90 -3.52 -0.06 -27.47 16 10 C 0.39 19.56 7.73 87.08 0.67 20.24 16 11 O -0.59 -30.12 12.57 -3.72 -0.05 -30.17 16 12 N -0.50 -27.17 5.24 -308.88 -1.62 -28.79 16 13 C -0.34 -18.65 9.67 84.35 0.82 -17.84 16 14 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 15 C 0.00 -0.20 5.51 85.14 0.47 0.27 16 16 N -0.89 -47.38 13.03 21.77 0.28 -47.09 16 17 Si 1.01 39.71 29.56 68.60 2.03 41.74 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 21 C 0.05 1.67 5.82 86.22 0.50 2.17 16 22 C -0.14 -3.70 5.21 30.53 0.16 -3.54 16 23 H 0.25 2.47 7.80 -4.42 -0.03 2.44 16 24 H 0.40 5.27 9.03 -74.05 -0.67 4.60 16 25 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.08 2.16 7.38 -2.39 -0.02 2.14 16 28 H 0.09 2.83 7.01 -2.39 -0.02 2.81 16 29 H 0.40 22.00 7.37 -92.71 -0.68 21.32 16 30 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 31 H 0.15 5.91 3.82 -82.00 -0.31 5.60 16 32 H 0.07 2.04 7.38 -2.39 -0.02 2.02 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.87 294.38 1.41 -63.46 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.50 Total: 40.07 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 5.70 Total: 25.30 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -3.78 Total: -99.15 kcal Atomic # 8 Polarization: -69.39 SS G_CDS: -2.03 Total: -71.42 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -64.87 1.41 -63.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707973957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.530 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds