Wall clock time and date at job start Mon Mar 30 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42895 * 109.49922 * 41.96241 * 3 2 1 5 5 C 1.53037 * 109.49834 * 162.02976 * 3 2 1 6 6 C 1.53042 * 109.54133 * 58.58053 * 5 3 2 7 7 C 1.53190 * 109.30920 * 61.36824 * 6 5 3 8 8 N 1.46932 * 108.77843 * 305.36636 * 7 6 5 9 9 C 1.34773 * 120.62912 * 233.60919 * 8 7 6 10 10 O 1.21445 * 119.99309 * 171.27036 * 9 8 7 11 11 C 1.48824 * 120.00354 * 351.26373 * 9 8 7 12 12 O 1.21508 * 120.00029 * 353.21187 * 11 9 8 13 13 N 1.34781 * 120.00077 * 173.20723 * 11 9 8 14 14 C 1.36114 * 119.99691 * 180.02562 * 13 11 9 15 15 H 1.07998 * 120.00475 * 359.97438 * 14 13 11 16 16 C 1.39593 * 119.99746 * 180.02562 * 14 13 11 17 17 N 1.31009 * 119.99931 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99856 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46759 * 90.00319 * 18 16 14 20 20 H 1.48493 * 109.46882 * 210.00348 * 18 16 14 21 21 H 1.48493 * 109.47040 * 330.00393 * 18 16 14 22 22 C 1.46928 * 118.73422 * 53.60753 * 8 7 6 23 23 H 4.38493 * 5.44148 * 180.02562 * 4 1 2 24 24 H 0.96704 * 114.00061 * 299.99650 * 4 3 2 25 25 H 1.08999 * 109.46241 * 178.60589 * 5 3 2 26 26 H 1.09007 * 109.45550 * 298.56778 * 5 3 2 27 27 H 1.08991 * 109.49958 * 181.32030 * 6 5 3 28 28 H 1.08997 * 109.49665 * 301.38744 * 6 5 3 29 29 H 1.09005 * 109.58748 * 65.15410 * 7 6 5 30 30 H 1.08997 * 109.59343 * 185.43638 * 7 6 5 31 31 H 0.96997 * 119.99620 * 359.97438 * 13 11 9 32 32 H 0.96999 * 120.00324 * 179.97438 * 17 16 14 33 33 H 1.09004 * 109.58268 * 186.60590 * 22 8 7 34 34 H 1.09001 * 109.58833 * 66.18037 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1234 -1.0007 -0.9007 5 6 3.1561 1.3731 -0.4451 6 6 2.6178 2.4503 0.4994 7 6 3.1289 2.1814 1.9182 8 7 2.7671 0.8092 2.2992 9 6 2.0900 0.5691 3.4395 10 8 1.6588 -0.5433 3.6667 11 6 1.8711 1.6668 4.4202 12 8 2.4055 2.7453 4.2543 13 7 1.0798 1.4646 5.4925 14 6 0.8792 2.4688 6.3891 15 1 1.3543 3.4274 6.2417 16 6 0.0601 2.2593 7.4999 17 7 -0.1326 3.2257 8.3633 18 14 -0.7611 0.6011 7.7553 19 1 0.1301 -0.2741 8.5584 20 1 -2.0468 0.7909 8.4736 21 1 -1.0193 -0.0317 6.4370 22 6 3.1574 -0.2960 1.4132 23 1 -1.0498 -0.0001 -0.0003 24 1 2.8387 -1.8978 -0.6782 25 1 4.2458 1.3808 -0.4211 26 1 2.8139 1.5761 -1.4599 27 1 2.9624 3.4298 0.1681 28 1 1.5281 2.4271 0.4942 29 1 4.2128 2.2939 1.9437 30 1 2.6719 2.8877 2.6113 31 1 0.6528 0.6038 5.6246 32 1 -0.7021 3.0803 9.1349 33 1 2.7173 -1.2259 1.7734 34 1 4.2436 -0.3855 1.3974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707975456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:44 Heat of formation + Delta-G solvation = -66.862667 kcal Electronic energy + Delta-G solvation = -20510.396952 eV Core-core repulsion = 17216.846362 eV Total energy + Delta-G solvation = -3293.550589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91725 -40.18485 -38.95372 -37.26367 -36.16144 -34.18474 -33.85457 -33.12002 -30.94300 -28.31689 -26.69745 -24.76261 -23.82703 -22.43622 -21.39708 -20.36283 -19.23629 -18.37340 -18.01555 -17.67737 -17.08437 -16.74085 -16.23834 -16.06206 -15.85365 -15.28901 -14.92350 -14.86078 -14.47415 -14.30550 -14.00770 -13.82526 -13.18539 -13.12566 -12.72567 -12.57492 -12.12438 -12.10476 -12.03572 -11.87970 -11.84692 -11.60798 -11.53729 -11.24742 -10.49358 -9.91401 -9.75725 -8.64051 -6.17043 0.46094 1.27028 1.30863 1.36076 1.49542 1.71700 1.74373 2.08067 2.22355 2.82832 3.04258 3.16200 3.18421 3.60812 3.71916 3.84661 4.02446 4.22124 4.34670 4.49733 4.60695 4.78627 4.84742 4.97416 5.01204 5.13701 5.23789 5.28943 5.41166 5.75419 6.03666 6.26368 6.54547 6.55840 6.59832 6.80373 7.12491 7.60469 8.50024 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030717 B = 0.005437 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.322422 B = 5148.982139 C = 5545.214126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.239 4.239 3 C 0.239 3.761 4 O -0.545 6.545 5 C -0.099 4.099 6 C -0.125 4.125 7 C 0.063 3.937 8 N -0.574 5.574 9 C 0.520 3.480 10 O -0.564 6.564 11 C 0.406 3.594 12 O -0.581 6.581 13 N -0.529 5.529 14 C -0.336 4.336 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.889 5.889 18 Si 0.944 3.056 19 H -0.253 1.253 20 H -0.256 1.256 21 H -0.251 1.251 22 C 0.087 3.913 23 H 0.239 0.761 24 H 0.396 0.604 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.391 0.609 32 H 0.291 0.709 33 H 0.088 0.912 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -8.009 -16.167 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.240 4.240 3 C 0.198 3.802 4 O -0.352 6.352 5 C -0.136 4.136 6 C -0.163 4.163 7 C -0.058 4.058 8 N -0.307 5.307 9 C 0.305 3.695 10 O -0.443 6.443 11 C 0.192 3.808 12 O -0.469 6.469 13 N -0.167 5.167 14 C -0.465 4.465 15 H 0.101 0.899 16 C -0.191 4.191 17 N -0.526 5.526 18 Si 0.764 3.236 19 H -0.177 1.177 20 H -0.180 1.180 21 H -0.175 1.175 22 C -0.035 4.035 23 H 0.256 0.744 24 H 0.247 0.753 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.227 0.773 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.949 -7.303 -16.261 18.257 hybrid contribution -1.153 -1.165 0.880 1.860 sum 2.796 -8.468 -15.381 17.779 Atomic orbital electron populations 1.25746 0.96987 0.98194 0.98897 1.24108 0.95799 1.02336 1.01712 1.18321 0.81890 0.91314 0.88718 1.86579 1.75914 1.19969 1.52730 1.21520 1.02483 0.89666 0.99978 1.21924 1.00661 1.00186 0.93515 1.22977 1.02272 0.82229 0.98287 1.47728 1.53902 1.09606 1.19474 1.19973 0.78543 0.87918 0.83089 1.90653 1.50896 1.25163 1.77618 1.19485 0.86689 0.89270 0.85381 1.90343 1.53762 1.27508 1.75326 1.41739 1.40283 1.14110 1.20534 1.19194 1.29859 0.94572 1.02904 0.89880 1.26020 0.96572 1.02302 0.94236 1.69532 1.36076 1.34482 1.12473 0.85651 0.79700 0.77977 0.80298 1.17712 1.17997 1.17481 1.22492 1.01870 0.90687 0.88441 0.74422 0.75347 0.88268 0.89954 0.87272 0.93104 0.89643 0.85894 0.77292 0.89887 0.89390 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.58 19.25 74.32 1.43 -3.14 16 2 C -0.24 -6.37 10.47 31.13 0.33 -6.04 16 3 C 0.24 5.48 1.09 -12.52 -0.01 5.46 16 4 O -0.54 -10.53 12.95 -148.98 -1.93 -12.46 16 5 C -0.10 -2.01 5.06 30.62 0.15 -1.85 16 6 C -0.12 -2.91 5.84 30.67 0.18 -2.73 16 7 C 0.06 1.87 5.97 86.36 0.52 2.39 16 8 N -0.57 -18.76 2.67 -821.16 -2.19 -20.95 16 9 C 0.52 21.40 7.71 87.08 0.67 22.07 16 10 O -0.56 -24.34 15.92 -3.54 -0.06 -24.40 16 11 C 0.41 19.53 7.67 87.08 0.67 20.20 16 12 O -0.58 -29.69 12.74 -3.74 -0.05 -29.74 16 13 N -0.53 -26.66 5.05 -308.87 -1.56 -28.23 16 14 C -0.34 -19.00 10.16 84.36 0.86 -18.14 16 15 H 0.08 5.35 7.36 -2.91 -0.02 5.33 16 16 C 0.01 0.76 5.51 85.14 0.47 1.23 16 17 N -0.89 -49.68 13.94 21.77 0.30 -49.37 16 18 Si 0.94 38.94 27.74 68.60 1.90 40.85 16 19 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.25 -9.86 6.53 99.48 0.65 -9.21 16 22 C 0.09 2.23 5.44 86.36 0.47 2.70 16 23 H 0.24 4.41 7.80 -4.43 -0.03 4.37 16 24 H 0.40 5.08 9.03 -74.05 -0.67 4.41 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.38 7.14 -2.39 -0.02 1.36 16 29 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.12 4.64 4.32 -48.20 -0.21 4.43 16 31 H 0.39 18.27 5.24 -92.71 -0.49 17.78 16 32 H 0.29 14.66 8.30 -92.71 -0.77 13.90 16 33 H 0.09 2.41 7.00 -2.39 -0.02 2.39 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -68.23 292.83 1.89 -66.33 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.26 Total: 35.82 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 5.73 Total: 22.14 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -3.45 Total: -98.55 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -2.03 Total: -66.59 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.85 kcal Total: -68.23 1.89 -66.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707975456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.529 kcal (2) G-P(sol) polarization free energy of solvation -68.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds