Wall clock time and date at job start Mon Mar 30 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42892 * 109.50008 * 318.40001 * 3 2 1 5 5 C 1.53042 * 109.49792 * 198.33283 * 3 2 1 6 6 C 1.53035 * 109.54011 * 301.41770 * 5 3 2 7 7 C 1.53188 * 109.31528 * 298.63086 * 6 5 3 8 8 N 1.46932 * 108.77479 * 54.63511 * 7 6 5 9 9 C 1.34771 * 120.63277 * 126.37267 * 8 7 6 10 10 O 1.21435 * 120.00118 * 188.75761 * 9 8 7 11 11 C 1.48832 * 120.00140 * 8.75218 * 9 8 7 12 12 O 1.21505 * 119.99607 * 6.80874 * 11 9 8 13 13 N 1.34769 * 120.00259 * 186.80718 * 11 9 8 14 14 C 1.36119 * 120.00068 * 179.97438 * 13 11 9 15 15 H 1.08004 * 120.00403 * 0.02562 * 14 13 11 16 16 C 1.39591 * 120.00283 * 180.02562 * 14 13 11 17 17 N 1.31008 * 119.99984 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99590 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47363 * 269.99923 * 18 16 14 20 20 H 1.48502 * 109.47455 * 30.00209 * 18 16 14 21 21 H 1.48503 * 109.47159 * 150.00425 * 18 16 14 22 22 C 1.46926 * 118.73622 * 306.64776 * 8 7 6 23 23 H 4.38497 * 5.44153 * 179.97438 * 4 1 2 24 24 H 0.96699 * 113.99962 * 59.93850 * 4 3 2 25 25 H 1.08996 * 109.46548 * 181.39084 * 5 3 2 26 26 H 1.09001 * 109.45532 * 61.43640 * 5 3 2 27 27 H 1.09004 * 109.50134 * 178.67775 * 6 5 3 28 28 H 1.09001 * 109.49812 * 58.58284 * 6 5 3 29 29 H 1.09003 * 109.58715 * 294.85425 * 7 6 5 30 30 H 1.08997 * 109.58975 * 174.42140 * 7 6 5 31 31 H 0.96999 * 120.00093 * 0.02562 * 13 11 9 32 32 H 0.97003 * 119.99769 * 180.02562 * 17 16 14 33 33 H 1.09003 * 109.58636 * 173.14410 * 22 8 7 34 34 H 1.09002 * 109.58779 * 293.56429 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1234 -1.0064 0.8943 5 6 3.1561 1.3703 0.4538 6 6 2.6178 2.4534 -0.4838 7 6 3.1289 2.1936 -1.9044 8 7 2.7671 0.8239 -2.2940 9 6 2.0897 0.5909 -3.4356 10 8 1.6579 -0.5198 -3.6696 11 6 1.8706 1.6948 -4.4094 12 8 2.4056 2.7720 -4.2371 13 7 1.0788 1.4997 -5.4824 14 6 0.8780 2.5095 -6.3728 15 1 1.3535 3.4671 -6.2197 16 6 0.0576 2.3076 -7.4839 17 7 -0.1352 3.2794 -8.3411 18 14 -0.7654 0.6517 -7.7485 19 1 0.1240 -0.2195 -8.5579 20 1 -1.0229 0.0111 -6.4337 21 1 -2.0518 0.8470 -8.4643 22 6 3.1524 -0.2865 -1.4123 23 1 -1.0499 -0.0001 0.0003 24 1 2.8379 -1.9018 0.6668 25 1 4.2458 1.3782 0.4299 26 1 2.8140 1.5668 1.4699 27 1 2.9624 3.4309 -0.1464 28 1 1.5281 2.4298 -0.4793 29 1 4.2128 2.3062 -1.9291 30 1 2.6699 2.9027 -2.5933 31 1 0.6514 0.6398 -5.6199 32 1 -0.7057 3.1391 -9.1130 33 1 2.7091 -1.2132 -1.7767 34 1 4.2383 -0.3802 -1.3961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707975459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:48 Heat of formation + Delta-G solvation = -42.396972 kcal Electronic energy + Delta-G solvation = -20510.907214 eV Core-core repulsion = 17218.417537 eV Total energy + Delta-G solvation = -3292.489677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43426 -38.77398 -37.26828 -35.96908 -34.36213 -32.92004 -32.10284 -31.87974 -29.82737 -26.59552 -25.14712 -23.60621 -22.31138 -21.21495 -19.52785 -18.82226 -18.04091 -16.97922 -16.43524 -16.32056 -15.45751 -15.27083 -15.00085 -14.62113 -14.50337 -13.64397 -13.41893 -13.21265 -13.01817 -12.79185 -12.54016 -12.53178 -12.11929 -11.43241 -11.24959 -11.06454 -10.97447 -10.86855 -10.72477 -10.50517 -10.35572 -10.19377 -10.12479 -9.80076 -8.53071 -8.40916 -8.11505 -6.66724 -4.08102 2.20234 2.66703 2.78669 2.98629 3.01609 3.05264 3.09432 3.89048 4.01290 4.08938 4.13388 4.48182 4.74381 4.85998 5.03186 5.10273 5.29520 5.37152 5.48881 5.59088 5.69678 5.76744 5.90085 5.93466 5.99991 6.30557 6.46128 6.78414 7.18885 7.33558 7.53333 7.57525 7.82840 8.15331 8.42765 8.66129 9.11007 9.53348 10.42823 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.030722 B = 0.005438 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.182664 B = 5148.118679 C = 5544.739209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.211 4.211 3 C 0.234 3.766 4 O -0.546 6.546 5 C -0.102 4.102 6 C -0.134 4.134 7 C 0.067 3.933 8 N -0.585 5.585 9 C 0.518 3.482 10 O -0.551 6.551 11 C 0.402 3.598 12 O -0.567 6.567 13 N -0.520 5.520 14 C -0.309 4.309 15 H 0.130 0.870 16 C 0.054 3.946 17 N -0.845 5.845 18 Si 0.875 3.125 19 H -0.263 1.263 20 H -0.260 1.260 21 H -0.270 1.270 22 C 0.090 3.910 23 H 0.217 0.783 24 H 0.381 0.619 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.158 0.842 31 H 0.384 0.616 32 H 0.283 0.717 33 H 0.095 0.905 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -6.268 14.232 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.211 4.211 3 C 0.193 3.807 4 O -0.351 6.351 5 C -0.139 4.139 6 C -0.172 4.172 7 C -0.054 4.054 8 N -0.320 5.320 9 C 0.305 3.695 10 O -0.428 6.428 11 C 0.188 3.812 12 O -0.456 6.456 13 N -0.156 5.156 14 C -0.438 4.438 15 H 0.147 0.853 16 C -0.155 4.155 17 N -0.481 5.481 18 Si 0.700 3.300 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.194 1.194 22 C -0.034 4.034 23 H 0.234 0.766 24 H 0.229 0.771 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.219 0.781 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.553 -5.577 14.294 15.750 hybrid contribution -1.167 -1.792 -0.484 2.192 sum 2.387 -7.369 13.810 15.834 Atomic orbital electron populations 1.24982 0.95946 0.98756 0.99605 1.23547 0.94814 1.01714 1.01022 1.18321 0.82559 0.90232 0.89600 1.86598 1.76023 1.18976 1.53537 1.21506 1.01415 0.90929 1.00073 1.22009 1.01795 0.98197 0.95247 1.23032 1.01202 0.83988 0.97194 1.47653 1.55962 1.07862 1.20546 1.20573 0.77457 0.89210 0.82306 1.90658 1.49869 1.25506 1.76799 1.18724 0.88286 0.88721 0.85489 1.90300 1.53930 1.26668 1.74663 1.41846 1.39070 1.14232 1.20415 1.19590 1.28055 0.95037 1.01164 0.85285 1.25241 0.96644 0.98249 0.95318 1.69435 1.34910 1.31955 1.11817 0.86687 0.80378 0.83121 0.79848 1.18780 1.18500 1.19425 1.22118 1.00401 0.92347 0.88527 0.76613 0.77052 0.90166 0.90914 0.89807 0.91329 0.91825 0.82550 0.78109 0.90651 0.88691 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 19.25 29.55 0.57 -1.81 16 2 C -0.21 -3.02 10.46 -37.12 -0.39 -3.41 16 3 C 0.23 3.03 1.09 -93.51 -0.10 2.93 16 4 O -0.55 -6.20 12.95 -35.23 -0.46 -6.66 16 5 C -0.10 -1.21 5.06 -26.69 -0.14 -1.34 16 6 C -0.13 -1.72 5.84 -26.62 -0.16 -1.88 16 7 C 0.07 1.04 5.97 -3.71 -0.02 1.02 16 8 N -0.59 -10.06 2.68 -173.77 -0.46 -10.52 16 9 C 0.52 10.84 7.71 -11.88 -0.09 10.75 16 10 O -0.55 -12.19 15.92 5.42 0.09 -12.11 16 11 C 0.40 9.51 7.67 -11.88 -0.09 9.42 16 12 O -0.57 -14.06 12.74 5.36 0.07 -13.99 16 13 N -0.52 -12.85 5.05 -11.59 -0.06 -12.91 16 14 C -0.31 -8.37 10.16 -15.14 -0.15 -8.52 16 15 H 0.13 3.87 7.37 -52.48 -0.39 3.48 16 16 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 17 N -0.84 -22.93 13.94 55.53 0.77 -22.15 16 18 Si 0.88 18.97 27.74 -169.99 -4.72 14.26 16 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.26 -5.49 6.53 56.52 0.37 -5.12 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C 0.09 1.27 5.40 -3.93 -0.02 1.25 16 23 H 0.22 2.21 7.80 -54.10 -0.42 1.79 16 24 H 0.38 3.04 9.03 45.56 0.41 3.45 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.98 7.14 -51.93 -0.37 0.61 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.16 2.95 4.32 -54.84 -0.24 2.72 16 31 H 0.38 9.00 5.24 -40.82 -0.21 8.78 16 32 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 33 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -30.73 292.79 -3.90 -34.63 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -2.86 Total: 15.32 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -0.69 Total: 9.73 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.25 Total: -45.59 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.30 Total: -32.76 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.72 Total: 14.26 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.73 -3.90 -34.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707975459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.766 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds