Wall clock time and date at job start Mon Mar 30 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47212 * 2 1 4 4 O 1.42897 * 109.46978 * 119.99523 * 2 1 3 5 5 N 1.46295 * 114.00513 * 274.99919 * 4 2 1 6 6 C 1.50695 * 109.47106 * 239.99837 * 2 1 3 7 7 O 1.21284 * 119.99978 * 244.99826 * 6 2 1 8 8 N 1.34779 * 120.00231 * 65.00316 * 6 2 1 9 9 C 1.39915 * 120.00402 * 174.78954 * 8 6 2 10 10 C 1.38959 * 120.03953 * 326.31001 * 9 8 6 11 11 C 1.38152 * 120.07391 * 180.02562 * 10 9 8 12 12 C 1.38174 * 120.13553 * 359.69520 * 11 10 9 13 13 C 1.38908 * 120.06820 * 0.55809 * 12 11 10 14 14 O 1.35757 * 120.02995 * 179.74650 * 13 12 11 15 15 C 1.34831 * 116.99607 * 173.81089 * 14 13 12 16 16 H 1.07999 * 120.00084 * 354.59964 * 15 14 13 17 17 C 1.38657 * 119.99744 * 174.59058 * 15 14 13 18 18 N 1.31559 * 119.99992 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99880 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47130 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46688 * 120.00436 * 19 17 15 22 22 H 1.48493 * 109.47425 * 240.00276 * 19 17 15 23 23 C 1.38715 * 120.03600 * 146.32603 * 9 8 6 24 24 H 1.09006 * 109.46868 * 59.99919 * 1 2 3 25 25 H 1.08997 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47017 * 300.00706 * 1 2 3 27 27 H 1.00905 * 110.99430 * 56.04538 * 5 4 2 28 28 H 1.00902 * 111.00235 * 179.97438 * 5 4 2 29 29 H 0.97002 * 119.99942 * 354.79096 * 8 6 2 30 30 H 1.08000 * 119.96123 * 0.02562 * 10 9 8 31 31 H 1.08005 * 119.93694 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.96367 * 180.30265 * 12 11 10 33 33 H 0.96997 * 119.99579 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.06995 * 359.95785 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 7 2.0949 0.1796 2.3520 6 6 2.0323 -0.7104 -1.2304 7 8 2.6530 -1.7467 -1.1214 8 7 1.7920 -0.1942 -2.4520 9 6 2.3499 -0.7931 -3.5868 10 6 3.6022 -1.3909 -3.5133 11 6 4.1540 -1.9819 -4.6334 12 6 3.4603 -1.9862 -5.8284 13 6 2.2104 -1.3857 -5.9098 14 8 1.5318 -1.3858 -7.0856 15 6 0.2736 -0.9016 -7.0662 16 1 -0.1813 -0.6178 -6.1287 17 6 -0.4361 -0.7679 -8.2498 18 7 0.1181 -1.1140 -9.3917 19 14 -2.1790 -0.0964 -8.2230 20 1 -2.5673 0.2168 -6.8243 21 1 -2.2458 1.1396 -9.0435 22 1 -3.1091 -1.1111 -8.7800 23 6 1.6538 -0.7904 -4.7866 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.2050 0.6098 2.5550 28 1 2.4347 -0.3403 3.1472 29 1 1.2321 0.5925 -2.5445 30 1 4.1446 -1.3935 -2.5794 31 1 5.1276 -2.4456 -4.5739 32 1 3.8923 -2.4534 -6.7012 33 1 -0.3786 -1.0208 -10.2196 34 1 0.6801 -0.3268 -4.8463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708685707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:52 Heat of formation + Delta-G solvation = -29.783255 kcal Electronic energy + Delta-G solvation = -19564.663390 eV Core-core repulsion = 16272.720685 eV Total energy + Delta-G solvation = -3291.942706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34143 -38.77257 -37.24119 -36.24901 -34.34235 -32.34397 -32.05294 -29.56814 -29.14958 -28.45258 -25.38448 -24.57104 -21.86834 -21.78499 -20.00869 -18.18331 -18.00848 -17.44472 -16.98041 -15.78439 -15.61933 -15.35525 -14.95470 -14.57534 -14.27193 -13.94860 -13.93270 -13.61280 -13.49110 -12.98684 -12.73235 -12.34917 -11.90049 -11.74251 -11.59680 -11.24177 -11.11349 -11.01744 -10.73829 -10.44787 -9.91271 -9.56962 -9.45199 -9.34569 -8.82297 -7.75991 -7.17568 -6.46656 -4.06375 1.90642 2.20742 2.35886 2.78549 3.10279 3.10550 3.16240 3.41888 3.94024 4.44831 4.54348 4.64455 4.69613 4.88266 5.09052 5.26135 5.27018 5.37742 5.69596 5.74588 5.97889 6.04499 6.21435 6.25952 6.42064 6.60789 6.67469 6.95094 6.96860 7.11035 7.29948 7.40404 7.64271 7.78615 7.97591 8.24479 8.98800 9.69365 10.71511 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.004630 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.111304 B = 6046.100267 C = 7172.969121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.208 6.208 5 N -0.673 5.673 6 C 0.517 3.483 7 O -0.500 6.500 8 N -0.664 5.664 9 C 0.180 3.820 10 C -0.205 4.205 11 C -0.062 4.062 12 C -0.199 4.199 13 C 0.168 3.832 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.255 4.255 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.339 0.661 28 H 0.369 0.631 29 H 0.407 0.593 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.269 0.731 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 5.573 17.564 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.007 3.993 3 H 0.120 0.880 4 O -0.221 6.221 5 N -0.240 5.240 6 C 0.301 3.699 7 O -0.372 6.372 8 N -0.311 5.311 9 C 0.088 3.912 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.219 4.219 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.276 4.276 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.184 0.816 29 H 0.242 0.758 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.589 4.961 16.837 17.563 hybrid contribution -2.117 0.383 0.534 2.217 sum -1.528 5.345 17.371 18.239 Atomic orbital electron populations 1.22343 0.93774 1.03998 1.03460 1.21845 0.94583 0.97869 0.84981 0.88031 1.90872 1.88202 1.28846 1.14153 1.64399 1.31379 1.26981 1.01269 1.20168 0.80408 0.85388 0.83914 1.90755 1.38411 1.22014 1.86034 1.43335 1.51379 1.31587 1.04793 1.17371 0.92151 0.96717 0.85010 1.20557 0.95298 1.07491 0.99232 1.20538 0.98463 0.97484 0.91653 1.20268 0.95200 1.07712 0.98678 1.19078 0.91258 0.92062 0.86211 1.84025 1.26622 1.71648 1.25663 1.21318 0.86677 1.43870 0.94966 0.89210 1.25280 1.00057 0.97004 0.94158 1.70046 1.37435 1.44188 0.97987 0.85661 0.80489 0.78609 0.78705 1.19223 1.20144 1.20137 1.20808 1.02541 1.11574 0.92707 0.90365 0.91004 0.91345 0.85125 0.81625 0.75797 0.86315 0.86517 0.86311 0.92054 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.47 37.16 0.35 -1.16 16 2 C 0.07 0.78 3.36 -27.88 -0.09 0.68 16 3 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 4 O -0.21 -2.64 11.14 -33.78 -0.38 -3.02 16 5 N -0.67 -5.58 10.76 60.35 0.65 -4.93 16 6 C 0.52 7.96 6.91 -10.99 -0.08 7.88 16 7 O -0.50 -9.87 14.21 -14.31 -0.20 -10.07 16 8 N -0.66 -9.95 5.30 -9.88 -0.05 -10.01 16 9 C 0.18 3.46 6.27 -83.72 -0.52 2.94 16 10 C -0.21 -4.01 8.65 -39.35 -0.34 -4.35 16 11 C -0.06 -1.19 10.03 -39.64 -0.40 -1.59 16 12 C -0.20 -4.28 9.99 -39.36 -0.39 -4.68 16 13 C 0.17 4.06 6.64 -39.13 -0.26 3.80 16 14 O -0.18 -4.98 9.76 0.02 0.00 -4.98 16 15 C -0.39 -10.78 9.44 30.89 0.29 -10.48 16 16 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 19 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.25 -5.47 9.05 -39.21 -0.35 -5.83 16 24 H 0.08 0.56 7.77 -51.93 -0.40 0.16 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.42 7.73 -51.93 -0.40 0.02 16 27 H 0.34 1.86 8.73 -39.29 -0.34 1.52 16 28 H 0.37 2.36 9.25 -39.29 -0.36 1.99 16 29 H 0.41 4.62 8.43 -40.82 -0.34 4.27 16 30 H 0.12 2.30 6.43 -52.49 -0.34 1.96 16 31 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 32 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.13 2.71 5.71 -52.49 -0.30 2.41 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -34.69 301.05 -5.20 -39.88 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.59 Total: 9.59 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.89 Total: -11.82 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 1.36 Total: -39.20 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.58 Total: -18.08 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.69 -5.20 -39.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708685707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.100 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds