Wall clock time and date at job start Mon Mar 30 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47212 * 2 1 4 4 O 1.42897 * 109.46978 * 119.99523 * 2 1 3 5 5 N 1.46295 * 114.00513 * 274.99919 * 4 2 1 6 6 C 1.50695 * 109.47106 * 239.99837 * 2 1 3 7 7 O 1.21284 * 119.99978 * 244.99826 * 6 2 1 8 8 N 1.34779 * 120.00231 * 65.00316 * 6 2 1 9 9 C 1.39915 * 120.00402 * 174.78954 * 8 6 2 10 10 C 1.38959 * 120.03953 * 326.31001 * 9 8 6 11 11 C 1.38152 * 120.07391 * 180.02562 * 10 9 8 12 12 C 1.38174 * 120.13553 * 359.69520 * 11 10 9 13 13 C 1.38908 * 120.06820 * 0.55809 * 12 11 10 14 14 O 1.35757 * 120.02995 * 179.74650 * 13 12 11 15 15 C 1.34831 * 116.99607 * 173.81089 * 14 13 12 16 16 H 1.07999 * 120.00084 * 354.59964 * 15 14 13 17 17 C 1.38657 * 119.99744 * 174.59058 * 15 14 13 18 18 N 1.31559 * 119.99992 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99880 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47130 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46688 * 120.00436 * 19 17 15 22 22 H 1.48493 * 109.47425 * 240.00276 * 19 17 15 23 23 C 1.38715 * 120.03600 * 146.32603 * 9 8 6 24 24 H 1.09006 * 109.46868 * 59.99919 * 1 2 3 25 25 H 1.08997 * 109.47128 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47017 * 300.00706 * 1 2 3 27 27 H 1.00905 * 110.99430 * 56.04538 * 5 4 2 28 28 H 1.00902 * 111.00235 * 179.97438 * 5 4 2 29 29 H 0.97002 * 119.99942 * 354.79096 * 8 6 2 30 30 H 1.08000 * 119.96123 * 0.02562 * 10 9 8 31 31 H 1.08005 * 119.93694 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.96367 * 180.30265 * 12 11 10 33 33 H 0.96997 * 119.99579 * 179.97438 * 18 17 15 34 34 H 1.08001 * 120.06995 * 359.95785 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 7 2.0949 0.1796 2.3520 6 6 2.0323 -0.7104 -1.2304 7 8 2.6530 -1.7467 -1.1214 8 7 1.7920 -0.1942 -2.4520 9 6 2.3499 -0.7931 -3.5868 10 6 3.6022 -1.3909 -3.5133 11 6 4.1540 -1.9819 -4.6334 12 6 3.4603 -1.9862 -5.8284 13 6 2.2104 -1.3857 -5.9098 14 8 1.5318 -1.3858 -7.0856 15 6 0.2736 -0.9016 -7.0662 16 1 -0.1813 -0.6178 -6.1287 17 6 -0.4361 -0.7679 -8.2498 18 7 0.1181 -1.1140 -9.3917 19 14 -2.1790 -0.0964 -8.2230 20 1 -2.5673 0.2168 -6.8243 21 1 -2.2458 1.1396 -9.0435 22 1 -3.1091 -1.1111 -8.7800 23 6 1.6538 -0.7904 -4.7866 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.2050 0.6098 2.5550 28 1 2.4347 -0.3403 3.1472 29 1 1.2321 0.5925 -2.5445 30 1 4.1446 -1.3935 -2.5794 31 1 5.1276 -2.4456 -4.5739 32 1 3.8923 -2.4534 -6.7012 33 1 -0.3786 -1.0208 -10.2196 34 1 0.6801 -0.3268 -4.8463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708685707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:52 Heat of formation + Delta-G solvation = -55.839404 kcal Electronic energy + Delta-G solvation = -19565.793270 eV Core-core repulsion = 16272.720685 eV Total energy + Delta-G solvation = -3293.072585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69806 -40.43713 -38.46990 -37.64528 -35.77825 -34.24490 -32.99693 -30.97337 -30.30446 -29.83368 -27.32958 -25.64064 -23.53106 -23.18575 -21.39172 -19.84163 -19.47372 -18.58801 -18.15089 -17.07837 -16.88321 -16.75324 -16.41396 -15.96408 -15.82993 -15.51711 -15.27274 -14.91374 -14.57715 -14.41657 -14.17043 -13.56127 -13.43203 -13.26570 -12.79132 -12.72784 -12.60510 -12.39072 -12.07043 -11.96565 -11.50413 -11.27623 -10.86168 -10.69442 -10.07440 -9.38476 -8.90612 -8.45830 -6.14765 0.35105 0.67311 1.27735 1.37409 1.43902 1.51047 1.55680 2.18586 2.35043 2.82940 3.16292 3.46822 3.50321 3.83330 4.01828 4.07323 4.17452 4.31033 4.42559 4.61378 4.67449 4.69272 4.74989 5.00595 5.11099 5.11562 5.35523 5.43166 5.64281 5.65708 5.79507 6.01973 6.10811 6.16680 6.39327 6.98435 7.02219 7.77693 8.77417 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.004630 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.111304 B = 6046.100267 C = 7172.969121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 H 0.127 0.873 4 O -0.250 6.250 5 N -0.663 5.663 6 C 0.514 3.486 7 O -0.548 6.548 8 N -0.653 5.653 9 C 0.186 3.814 10 C -0.202 4.202 11 C -0.052 4.052 12 C -0.212 4.212 13 C 0.135 3.865 14 O -0.226 6.226 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.247 1.247 21 H -0.268 1.268 22 H -0.272 1.272 23 C -0.256 4.256 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.356 0.644 28 H 0.379 0.621 29 H 0.426 0.574 30 H 0.126 0.874 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.273 0.727 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 7.155 20.348 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.018 3.982 3 H 0.145 0.855 4 O -0.261 6.261 5 N -0.235 5.235 6 C 0.301 3.699 7 O -0.423 6.423 8 N -0.301 5.301 9 C 0.092 3.908 10 C -0.223 4.223 11 C -0.070 4.070 12 C -0.232 4.232 13 C 0.084 3.916 14 O -0.132 6.132 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.558 5.558 19 Si 0.838 3.162 20 H -0.170 1.170 21 H -0.193 1.193 22 H -0.197 1.197 23 C -0.278 4.278 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.168 0.832 28 H 0.195 0.805 29 H 0.265 0.735 30 H 0.144 0.856 31 H 0.171 0.829 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.356 6.569 19.679 20.749 hybrid contribution -1.615 -0.128 -0.048 1.621 sum -1.971 6.441 19.630 20.754 Atomic orbital electron populations 1.22366 0.91515 1.03526 1.05742 1.21826 0.95965 0.97761 0.82601 0.85515 1.90822 1.88577 1.31054 1.15664 1.64386 1.32774 1.26102 1.00246 1.21097 0.79098 0.84824 0.84876 1.90728 1.40616 1.24272 1.86717 1.43286 1.51206 1.31854 1.03733 1.17411 0.91878 0.95907 0.85621 1.20849 0.95378 1.06556 0.99498 1.20911 0.99498 0.96310 0.90294 1.20493 0.94842 1.07971 0.99902 1.19591 0.92342 0.93497 0.86198 1.83993 1.27491 1.73857 1.27845 1.21857 0.87093 1.44001 0.95954 0.87859 1.26604 1.04972 0.97027 0.93381 1.70194 1.39850 1.46778 0.98953 0.84524 0.74000 0.77858 0.79788 1.17021 1.19328 1.19738 1.20843 1.02738 1.11363 0.92814 0.88835 0.92823 0.88379 0.83158 0.80540 0.73517 0.85585 0.82883 0.86161 0.91830 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.47 71.98 0.68 -1.67 16 2 C 0.08 1.56 3.36 29.85 0.10 1.66 16 3 H 0.13 1.81 8.10 -2.38 -0.02 1.79 16 4 O -0.25 -5.79 11.14 -31.16 -0.35 -6.14 16 5 N -0.66 -8.98 10.76 37.02 0.40 -8.58 16 6 C 0.51 14.83 6.91 87.66 0.61 15.43 16 7 O -0.55 -21.07 14.21 15.95 0.23 -20.84 16 8 N -0.65 -18.18 5.30 -303.57 -1.61 -19.79 16 9 C 0.19 6.92 6.27 38.14 0.24 7.16 16 10 C -0.20 -7.61 8.65 22.42 0.19 -7.41 16 11 C -0.05 -1.91 10.03 22.23 0.22 -1.68 16 12 C -0.21 -9.26 9.99 22.42 0.22 -9.04 16 13 C 0.14 6.71 6.64 22.56 0.15 6.86 16 14 O -0.23 -13.36 9.76 -22.83 -0.22 -13.59 16 15 C -0.41 -23.37 9.44 67.92 0.64 -22.73 16 16 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 17 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 18 N -0.92 -55.59 13.67 21.61 0.30 -55.29 16 19 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 20 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 23 C -0.26 -11.00 9.05 22.51 0.20 -10.79 16 24 H 0.09 0.98 7.77 -2.38 -0.02 0.96 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.77 7.73 -2.39 -0.02 0.75 16 27 H 0.36 2.60 8.73 -89.69 -0.78 1.82 16 28 H 0.38 3.85 9.25 -89.69 -0.83 3.02 16 29 H 0.43 8.47 8.43 -92.71 -0.78 7.68 16 30 H 0.13 4.65 6.43 -2.91 -0.02 4.63 16 31 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.12 5.09 8.06 -2.91 -0.02 5.06 16 33 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.13 5.52 5.71 -2.91 -0.02 5.51 16 Total: -1.00 -79.06 301.05 3.28 -75.78 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -1.22 Total: 28.07 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.73 Total: -22.98 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.92 Total: -83.66 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.34 Total: -40.57 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -79.06 3.28 -75.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708685707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.939 kcal (2) G-P(sol) polarization free energy of solvation -79.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds