Wall clock time and date at job start Mon Mar 30 2020 04:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47274 * 2 1 4 4 O 1.42899 * 109.47186 * 240.00631 * 2 1 3 5 5 N 1.46301 * 114.00170 * 84.99611 * 4 2 1 6 6 C 1.50695 * 109.47490 * 120.00233 * 2 1 3 7 7 O 1.21292 * 119.99841 * 114.99663 * 6 2 1 8 8 N 1.34773 * 119.99895 * 295.00330 * 6 2 1 9 9 C 1.39932 * 119.99746 * 175.75745 * 8 6 2 10 10 C 1.38966 * 120.03274 * 214.83528 * 9 8 6 11 11 C 1.38162 * 120.06138 * 179.74734 * 10 9 8 12 12 C 1.38167 * 120.14189 * 0.55014 * 11 10 9 13 13 C 1.38918 * 120.06621 * 359.70018 * 12 11 10 14 14 O 1.35756 * 120.02677 * 179.97438 * 13 12 11 15 15 C 1.34823 * 117.00249 * 5.37401 * 14 13 12 16 16 H 1.08005 * 120.00234 * 354.95593 * 15 14 13 17 17 C 1.38658 * 120.00108 * 174.96508 * 15 14 13 18 18 N 1.31552 * 119.99787 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47231 * 89.99993 * 19 17 15 21 21 H 1.48506 * 109.46923 * 209.99549 * 19 17 15 22 22 H 1.48497 * 109.47275 * 329.99414 * 19 17 15 23 23 C 1.38714 * 120.03671 * 35.11062 * 9 8 6 24 24 H 1.09007 * 109.46959 * 59.99058 * 1 2 3 25 25 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47014 * 300.00154 * 1 2 3 27 27 H 1.00902 * 111.00270 * 56.05031 * 5 4 2 28 28 H 1.00903 * 111.00156 * 179.97438 * 5 4 2 29 29 H 0.96998 * 120.00672 * 355.48003 * 8 6 2 30 30 H 1.07992 * 119.96849 * 0.02562 * 10 9 8 31 31 H 1.07998 * 119.92764 * 180.27264 * 11 10 9 32 32 H 1.07991 * 119.96698 * 179.72479 * 12 11 10 33 33 H 0.97002 * 119.99894 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.06570 * 359.95285 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 7 2.0948 0.1797 -2.3520 6 6 2.0324 -0.7104 1.2304 7 8 2.6531 -1.7468 1.1213 8 7 1.7919 -0.1943 2.4519 9 6 2.1803 -0.8978 3.5975 10 6 1.4013 -0.8397 4.7468 11 6 1.7814 -1.5382 5.8766 12 6 2.9423 -2.2873 5.8712 13 6 3.7280 -2.3452 4.7271 14 8 4.8688 -3.0811 4.7229 15 6 5.1249 -3.8197 5.8213 16 1 4.4797 -3.7456 6.6844 17 6 6.2165 -4.6743 5.8432 18 7 7.0021 -4.7648 4.7919 19 14 6.5716 -5.6971 7.3654 20 1 5.8677 -7.0005 7.2613 21 1 8.0340 -5.9317 7.4740 22 1 6.0957 -4.9723 8.5709 23 6 3.3461 -1.6493 3.5889 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.6728 0.9874 -2.1738 28 1 2.4354 -0.3399 -3.1471 29 1 1.3534 0.6667 2.5370 30 1 0.4956 -0.2515 4.7554 31 1 1.1720 -1.4951 6.7672 32 1 3.2391 -2.8287 6.7573 33 1 7.7656 -5.3630 4.8070 34 1 3.9552 -1.6931 2.6980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708685708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:55 Heat of formation + Delta-G solvation = -26.648119 kcal Electronic energy + Delta-G solvation = -19569.761633 eV Core-core repulsion = 16277.954877 eV Total energy + Delta-G solvation = -3291.806756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30449 -38.71614 -37.17342 -36.28468 -34.18909 -32.26448 -32.07075 -29.54333 -29.13500 -28.29233 -25.34605 -24.50752 -22.19890 -21.36271 -20.16709 -18.33041 -17.78304 -17.17890 -16.74060 -16.01282 -15.50791 -15.22394 -15.05682 -14.74846 -14.26586 -14.14539 -13.55798 -13.43201 -13.12823 -12.85404 -12.50484 -12.36387 -12.12789 -11.74163 -11.51407 -11.20031 -11.01879 -10.97798 -10.77179 -10.44465 -9.82045 -9.69474 -9.30888 -9.07207 -8.80151 -7.72051 -7.18640 -6.40513 -3.99874 1.96844 2.26868 2.34141 2.79922 3.15247 3.16969 3.21080 3.42224 4.00205 4.50787 4.63255 4.69562 4.80859 4.84887 5.13625 5.35226 5.46965 5.57251 5.62615 5.82268 5.94989 6.08944 6.20764 6.37870 6.49182 6.66184 6.73704 6.90385 7.03324 7.08030 7.35152 7.47953 7.65271 7.78983 8.04014 8.30259 9.04188 9.75359 10.77383 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.004346 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.221165 B = 6441.470598 C = 7342.213888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.091 0.909 4 O -0.207 6.207 5 N -0.672 5.672 6 C 0.505 3.495 7 O -0.490 6.490 8 N -0.664 5.664 9 C 0.174 3.826 10 C -0.234 4.234 11 C -0.058 4.058 12 C -0.244 4.244 13 C 0.166 3.834 14 O -0.173 6.173 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.187 4.187 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.338 0.662 28 H 0.369 0.631 29 H 0.406 0.594 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.270 0.730 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 12.372 -6.576 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.109 0.891 4 O -0.220 6.220 5 N -0.239 5.239 6 C 0.289 3.711 7 O -0.361 6.361 8 N -0.311 5.311 9 C 0.082 3.918 10 C -0.255 4.255 11 C -0.077 4.077 12 C -0.264 4.264 13 C 0.112 3.888 14 O -0.076 6.076 15 C -0.469 4.469 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.767 3.233 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.209 4.209 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.148 0.852 28 H 0.183 0.817 29 H 0.241 0.759 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.339 11.308 -6.922 17.446 hybrid contribution 0.937 -0.018 0.804 1.235 sum -10.402 11.290 -6.118 16.526 Atomic orbital electron populations 1.22190 0.92985 1.03900 1.03125 1.21784 0.95801 0.96509 0.84626 0.89112 1.90905 1.88019 1.27330 1.15759 1.64500 1.58049 1.05785 0.95588 1.20438 0.80461 0.86011 0.84167 1.90835 1.36883 1.22601 1.85799 1.43216 1.60773 1.22921 1.04225 1.17159 0.93335 0.95936 0.85420 1.20262 1.01650 1.09503 0.94107 1.20506 0.95511 0.95078 0.96640 1.21189 0.98325 1.07199 0.99695 1.19133 0.86570 0.90758 0.92377 1.83991 1.32180 1.51022 1.40435 1.21356 1.12597 1.20752 0.92185 0.88958 1.25311 0.95356 0.97059 0.98827 1.70056 1.14977 1.35844 1.28601 0.85700 0.78055 0.79670 0.79911 1.19864 1.20278 1.19175 1.20164 0.97671 1.04566 0.98468 0.90426 0.91209 0.91319 0.85151 0.81669 0.75901 0.87292 0.86977 0.85413 0.92015 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.52 37.16 0.35 -1.18 16 2 C 0.08 0.87 3.39 -27.89 -0.09 0.78 16 3 H 0.09 0.76 7.97 -51.92 -0.41 0.35 16 4 O -0.21 -2.86 11.14 -33.78 -0.38 -3.23 16 5 N -0.67 -6.06 10.78 60.35 0.65 -5.41 16 6 C 0.51 8.09 7.02 -10.99 -0.08 8.02 16 7 O -0.49 -10.69 13.95 -14.31 -0.20 -10.89 16 8 N -0.66 -9.53 5.30 -9.88 -0.05 -9.58 16 9 C 0.17 3.28 6.29 -83.71 -0.53 2.75 16 10 C -0.23 -3.98 9.96 -39.34 -0.39 -4.37 16 11 C -0.06 -1.07 10.03 -39.64 -0.40 -1.46 16 12 C -0.24 -5.42 9.17 -39.36 -0.36 -5.78 16 13 C 0.17 4.25 6.64 -39.14 -0.26 3.99 16 14 O -0.17 -5.20 9.76 0.05 0.00 -5.20 16 15 C -0.39 -11.31 9.49 30.89 0.29 -11.02 16 16 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16 19 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.19 -4.40 8.64 -39.21 -0.34 -4.73 16 24 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.34 2.25 9.06 -39.29 -0.36 1.89 16 28 H 0.37 2.73 9.25 -39.29 -0.36 2.36 16 29 H 0.41 3.91 8.76 -40.82 -0.36 3.55 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.13 3.36 6.23 -52.48 -0.33 3.03 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -36.45 302.01 -5.22 -41.67 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -3.63 Total: 9.48 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.90 Total: -12.00 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.36 Total: -40.29 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.58 Total: -19.32 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -36.45 -5.22 -41.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708685708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.022 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds