Wall clock time and date at job start Mon Mar 30 2020 04:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47274 * 2 1 4 4 O 1.42899 * 109.47186 * 240.00631 * 2 1 3 5 5 N 1.46301 * 114.00170 * 84.99611 * 4 2 1 6 6 C 1.50695 * 109.47490 * 120.00233 * 2 1 3 7 7 O 1.21292 * 119.99841 * 114.99663 * 6 2 1 8 8 N 1.34773 * 119.99895 * 295.00330 * 6 2 1 9 9 C 1.39932 * 119.99746 * 175.75745 * 8 6 2 10 10 C 1.38966 * 120.03274 * 214.83528 * 9 8 6 11 11 C 1.38162 * 120.06138 * 179.74734 * 10 9 8 12 12 C 1.38167 * 120.14189 * 0.55014 * 11 10 9 13 13 C 1.38918 * 120.06621 * 359.70018 * 12 11 10 14 14 O 1.35756 * 120.02677 * 179.97438 * 13 12 11 15 15 C 1.34823 * 117.00249 * 5.37401 * 14 13 12 16 16 H 1.08005 * 120.00234 * 354.95593 * 15 14 13 17 17 C 1.38658 * 120.00108 * 174.96508 * 15 14 13 18 18 N 1.31552 * 119.99787 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47231 * 89.99993 * 19 17 15 21 21 H 1.48506 * 109.46923 * 209.99549 * 19 17 15 22 22 H 1.48497 * 109.47275 * 329.99414 * 19 17 15 23 23 C 1.38714 * 120.03671 * 35.11062 * 9 8 6 24 24 H 1.09007 * 109.46959 * 59.99058 * 1 2 3 25 25 H 1.08995 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47014 * 300.00154 * 1 2 3 27 27 H 1.00902 * 111.00270 * 56.05031 * 5 4 2 28 28 H 1.00903 * 111.00156 * 179.97438 * 5 4 2 29 29 H 0.96998 * 120.00672 * 355.48003 * 8 6 2 30 30 H 1.07992 * 119.96849 * 0.02562 * 10 9 8 31 31 H 1.07998 * 119.92764 * 180.27264 * 11 10 9 32 32 H 1.07991 * 119.96698 * 179.72479 * 12 11 10 33 33 H 0.97002 * 119.99894 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.06570 * 359.95285 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 7 2.0948 0.1797 -2.3520 6 6 2.0324 -0.7104 1.2304 7 8 2.6531 -1.7468 1.1213 8 7 1.7919 -0.1943 2.4519 9 6 2.1803 -0.8978 3.5975 10 6 1.4013 -0.8397 4.7468 11 6 1.7814 -1.5382 5.8766 12 6 2.9423 -2.2873 5.8712 13 6 3.7280 -2.3452 4.7271 14 8 4.8688 -3.0811 4.7229 15 6 5.1249 -3.8197 5.8213 16 1 4.4797 -3.7456 6.6844 17 6 6.2165 -4.6743 5.8432 18 7 7.0021 -4.7648 4.7919 19 14 6.5716 -5.6971 7.3654 20 1 5.8677 -7.0005 7.2613 21 1 8.0340 -5.9317 7.4740 22 1 6.0957 -4.9723 8.5709 23 6 3.3461 -1.6493 3.5889 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.6728 0.9874 -2.1738 28 1 2.4354 -0.3399 -3.1471 29 1 1.3534 0.6667 2.5370 30 1 0.4956 -0.2515 4.7554 31 1 1.1720 -1.4951 6.7672 32 1 3.2391 -2.8287 6.7573 33 1 7.7656 -5.3630 4.8070 34 1 3.9552 -1.6931 2.6980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708685708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:54 Heat of formation + Delta-G solvation = -56.069651 kcal Electronic energy + Delta-G solvation = -19571.037447 eV Core-core repulsion = 16277.954877 eV Total energy + Delta-G solvation = -3293.082569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70220 -40.43142 -38.51033 -37.67094 -35.67552 -34.28494 -33.02727 -31.15172 -30.23552 -29.62175 -27.36870 -25.65001 -23.69608 -23.01205 -21.49794 -20.04922 -19.26062 -18.54893 -17.96934 -17.00826 -16.90468 -16.77761 -16.52774 -16.06389 -15.85859 -15.68274 -15.47886 -14.70186 -14.45729 -14.26191 -13.99867 -13.60906 -13.25926 -13.20285 -12.92742 -12.89944 -12.69009 -12.37009 -12.11917 -11.82636 -11.42985 -11.30765 -10.79413 -10.77835 -10.03226 -9.38214 -8.90381 -8.47834 -6.17903 0.37818 0.68958 1.26831 1.33717 1.42634 1.50826 1.52838 2.16054 2.34248 2.81448 3.15674 3.38317 3.66300 3.90716 4.02473 4.11189 4.13344 4.35637 4.41074 4.67534 4.73130 4.81609 4.86206 5.02809 5.09953 5.25063 5.38651 5.42194 5.62280 5.72729 5.76979 6.01650 6.07926 6.19026 6.41688 6.95629 7.10008 7.78485 8.76203 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.004346 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.221165 B = 6441.470598 C = 7342.213888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.084 3.916 3 H 0.130 0.870 4 O -0.258 6.258 5 N -0.655 5.655 6 C 0.500 3.500 7 O -0.559 6.559 8 N -0.644 5.644 9 C 0.181 3.819 10 C -0.199 4.199 11 C -0.048 4.048 12 C -0.254 4.254 13 C 0.124 3.876 14 O -0.237 6.237 15 C -0.416 4.416 16 H 0.108 0.892 17 C -0.028 4.028 18 N -0.926 5.926 19 Si 1.025 2.975 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.247 1.247 23 C -0.217 4.217 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.353 0.647 28 H 0.377 0.623 29 H 0.434 0.566 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.124 0.876 33 H 0.272 0.728 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 14.984 -5.229 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 H 0.148 0.852 4 O -0.270 6.270 5 N -0.227 5.227 6 C 0.287 3.713 7 O -0.435 6.435 8 N -0.293 5.293 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.067 4.067 12 C -0.273 4.273 13 C 0.073 3.927 14 O -0.144 6.144 15 C -0.492 4.492 16 H 0.125 0.875 17 C -0.225 4.225 18 N -0.564 5.564 19 Si 0.843 3.157 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.170 1.170 23 C -0.238 4.238 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.165 0.835 28 H 0.192 0.808 29 H 0.275 0.725 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.095 14.017 -5.570 21.339 hybrid contribution 1.797 -0.542 0.207 1.889 sum -13.298 13.475 -5.362 19.677 Atomic orbital electron populations 1.22197 0.90705 1.03117 1.05443 1.21872 0.97129 0.96971 0.81837 0.85247 1.90858 1.88440 1.30176 1.17480 1.64533 1.58749 1.05479 0.93905 1.21507 0.78832 0.85243 0.85747 1.90829 1.39927 1.25929 1.86788 1.43092 1.59939 1.23598 1.02657 1.17333 0.91606 0.94686 0.87678 1.20932 1.01935 1.07109 0.91933 1.21078 0.93847 0.92863 0.98891 1.21350 0.99580 1.08158 0.98248 1.19696 0.86882 0.91588 0.94528 1.83957 1.35121 1.53574 1.41737 1.21945 1.13348 1.21191 0.92668 0.87488 1.26747 0.94733 0.98215 1.02782 1.70230 1.16357 1.37982 1.31820 0.84510 0.78080 0.77611 0.75465 1.18907 1.19605 1.16979 1.20193 0.99835 1.06866 0.96923 0.88808 0.93508 0.88256 0.83523 0.80826 0.72489 0.81292 0.81985 0.85838 0.91892 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.52 71.98 0.68 -1.70 16 2 C 0.08 1.76 3.39 29.85 0.10 1.86 16 3 H 0.13 1.66 7.97 -2.38 -0.02 1.64 16 4 O -0.26 -6.97 11.14 -31.17 -0.35 -7.32 16 5 N -0.65 -10.65 10.78 37.02 0.40 -10.25 16 6 C 0.50 15.72 7.02 87.66 0.62 16.34 16 7 O -0.56 -25.78 13.95 15.92 0.22 -25.56 16 8 N -0.64 -16.73 5.30 -303.55 -1.61 -18.34 16 9 C 0.18 6.49 6.29 38.14 0.24 6.73 16 10 C -0.20 -5.72 9.96 22.43 0.22 -5.50 16 11 C -0.05 -1.56 10.03 22.23 0.22 -1.34 16 12 C -0.25 -11.22 9.17 22.42 0.21 -11.01 16 13 C 0.12 6.71 6.64 22.56 0.15 6.86 16 14 O -0.24 -15.48 9.76 -22.73 -0.22 -15.70 16 15 C -0.42 -25.44 9.49 67.92 0.64 -24.79 16 16 H 0.11 5.88 5.20 -2.91 -0.02 5.86 16 17 C -0.03 -1.67 5.49 84.83 0.47 -1.20 16 18 N -0.93 -60.16 13.67 21.61 0.30 -59.86 16 19 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 23 C -0.22 -10.69 8.64 22.51 0.19 -10.50 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 27 H 0.35 3.87 9.06 -89.69 -0.81 3.06 16 28 H 0.38 5.12 9.25 -89.69 -0.83 4.29 16 29 H 0.43 6.15 8.76 -92.71 -0.81 5.34 16 30 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.12 5.46 5.63 -2.92 -0.02 5.45 16 33 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 34 H 0.10 5.39 6.23 -2.91 -0.02 5.37 16 Total: -1.00 -91.88 302.01 3.24 -88.64 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -1.28 Total: 26.20 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 3.75 Total: -24.26 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -0.91 Total: -88.45 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.35 Total: -48.57 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -91.88 3.24 -88.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708685708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.570 kcal (2) G-P(sol) polarization free energy of solvation -91.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds