Wall clock time and date at job start Mon Mar 30 2020 04:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47233 * 2 1 4 4 O 1.42904 * 109.47184 * 119.99754 * 2 1 3 5 5 N 1.46301 * 114.00093 * 274.99850 * 4 2 1 6 6 C 1.50702 * 109.47042 * 239.99690 * 2 1 3 7 7 O 1.21291 * 119.99812 * 244.99876 * 6 2 1 8 8 N 1.34770 * 119.99952 * 65.00285 * 6 2 1 9 9 C 1.40001 * 120.00205 * 175.49544 * 8 6 2 10 10 C 1.38919 * 120.00305 * 214.84739 * 9 8 6 11 11 C 1.38000 * 119.99709 * 179.76532 * 10 9 8 12 12 C 1.38909 * 120.00028 * 0.48077 * 11 10 9 13 13 O 1.35777 * 119.99636 * 179.74445 * 12 11 10 14 14 C 1.34823 * 116.99709 * 185.36699 * 13 12 11 15 15 H 1.07992 * 119.99908 * 354.96811 * 14 13 12 16 16 C 1.38634 * 119.99529 * 174.96843 * 14 13 12 17 17 N 1.31576 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99595 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 59.99724 * 18 16 14 20 20 H 1.48495 * 109.46879 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47116 * 299.99529 * 18 16 14 22 22 C 1.38909 * 120.00263 * 359.77524 * 12 11 10 23 23 C 1.37996 * 120.00147 * 359.97438 * 22 12 11 24 24 H 1.08995 * 109.47147 * 299.99841 * 1 2 3 25 25 H 1.08997 * 109.46763 * 60.00173 * 1 2 3 26 26 H 1.09008 * 109.46720 * 180.02562 * 1 2 3 27 27 H 1.00909 * 110.99447 * 56.04495 * 5 4 2 28 28 H 1.00893 * 111.00216 * 179.97438 * 5 4 2 29 29 H 0.97003 * 120.00347 * 355.48921 * 8 6 2 30 30 H 1.08000 * 119.99977 * 359.97438 * 10 9 8 31 31 H 1.07999 * 120.00155 * 180.21178 * 11 10 9 32 32 H 0.96998 * 119.99920 * 180.02562 * 17 16 14 33 33 H 1.08007 * 119.99588 * 179.97438 * 22 12 11 34 34 H 1.08002 * 119.99967 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 7 2.0950 0.1796 2.3520 6 6 2.0323 -0.7105 -1.2304 7 8 2.6530 -1.7468 -1.1214 8 7 1.7919 -0.1943 -2.4520 9 6 2.3381 -0.8022 -3.5887 10 6 2.7426 -0.0240 -4.6660 11 6 3.2854 -0.6230 -5.7845 12 6 3.4181 -2.0047 -5.8371 13 8 3.9474 -2.5943 -6.9398 14 6 3.9461 -3.9421 -6.9733 15 1 3.6113 -4.5033 -6.1136 16 6 4.3746 -4.6075 -8.1116 17 7 4.7821 -3.9237 -9.1592 18 14 4.3722 -6.4749 -8.1583 19 1 2.9889 -6.9735 -7.9506 20 1 4.8717 -6.9376 -9.4780 21 1 5.2535 -6.9981 -7.0838 22 6 3.0088 -2.7833 -4.7620 23 6 2.4707 -2.1840 -3.6414 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.2051 0.6098 2.5551 28 1 2.4348 -0.3402 3.1472 29 1 1.2404 0.5984 -2.5436 30 1 2.6353 1.0499 -4.6269 31 1 3.6030 -0.0178 -6.6207 32 1 5.0816 -4.3893 -9.9557 33 1 3.1116 -3.8576 -4.8032 34 1 2.1521 -2.7894 -2.8057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708693680.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:58 Heat of formation + Delta-G solvation = -27.609540 kcal Electronic energy + Delta-G solvation = -19365.394697 eV Core-core repulsion = 16073.546251 eV Total energy + Delta-G solvation = -3291.848446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27496 -38.76108 -37.26556 -36.26717 -34.08637 -32.32558 -31.89934 -30.19931 -29.39532 -27.91080 -25.38804 -24.31385 -22.33944 -21.40229 -19.99383 -18.27987 -17.76514 -17.61737 -16.90688 -16.29125 -15.73423 -15.30199 -14.55322 -14.51202 -14.31639 -13.81305 -13.63438 -13.58887 -13.51146 -12.87095 -12.73001 -12.54468 -11.90489 -11.72491 -11.54610 -11.50786 -11.20175 -10.98876 -10.74483 -10.43748 -9.69529 -9.63127 -9.36581 -9.15100 -8.68907 -8.20005 -6.94303 -6.43220 -4.00889 2.04626 2.20219 2.24170 2.80737 3.16448 3.17690 3.19837 3.46739 3.99483 4.45318 4.56867 4.59954 4.67435 4.91468 5.11248 5.23970 5.26592 5.34370 5.67694 5.68996 5.75633 6.13189 6.17348 6.33115 6.42444 6.66349 6.73503 6.87036 7.00822 7.09927 7.31174 7.44759 7.66279 7.77868 8.01920 8.32737 9.02498 9.71515 10.74613 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036975 B = 0.003692 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.080611 B = 7582.548846 C = 8077.658132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 H 0.100 0.900 4 O -0.207 6.207 5 N -0.673 5.673 6 C 0.511 3.489 7 O -0.506 6.506 8 N -0.655 5.655 9 C 0.032 3.968 10 C -0.091 4.091 11 C -0.178 4.178 12 C 0.147 3.853 13 O -0.176 6.176 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.221 4.221 23 C -0.064 4.064 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.338 0.662 28 H 0.370 0.630 29 H 0.402 0.598 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 9.564 16.619 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.118 0.882 4 O -0.220 6.220 5 N -0.241 5.241 6 C 0.296 3.704 7 O -0.380 6.380 8 N -0.302 5.302 9 C -0.060 4.060 10 C -0.111 4.111 11 C -0.198 4.198 12 C 0.093 3.907 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.240 4.240 23 C -0.084 4.084 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.184 0.816 29 H 0.236 0.764 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.283 9.058 15.895 20.083 hybrid contribution -1.116 -0.924 0.535 1.545 sum -9.399 8.134 16.431 20.602 Atomic orbital electron populations 1.22333 0.93976 1.03854 1.03270 1.21850 0.94369 0.97906 0.85165 0.88223 1.90886 1.88206 1.28781 1.14135 1.64397 1.31264 1.27086 1.01327 1.20151 0.80395 0.85975 0.83925 1.90745 1.38808 1.22412 1.85991 1.43032 1.51456 1.31249 1.04432 1.17226 1.08841 0.91917 0.87978 1.20347 0.99655 0.98003 0.93114 1.19990 1.08005 0.92271 0.99536 1.19417 0.91393 0.92191 0.87675 1.83974 1.67559 1.22444 1.33931 1.21302 1.45593 0.78264 1.01597 0.89040 1.25282 0.96332 1.00559 0.94289 1.70036 1.39816 1.36227 1.03732 0.85781 0.79072 0.80590 0.78019 1.19478 1.20289 1.19434 1.21109 1.07814 1.00821 0.94305 1.20856 0.97641 0.92664 0.97191 0.91466 0.90515 0.91091 0.85225 0.81602 0.76378 0.86647 0.85991 0.91971 0.85166 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.07 0.74 3.36 -27.88 -0.09 0.65 16 3 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 4 O -0.21 -2.62 11.14 -33.78 -0.38 -3.00 16 5 N -0.67 -5.55 10.76 60.35 0.65 -4.90 16 6 C 0.51 7.62 7.02 -10.99 -0.08 7.54 16 7 O -0.51 -10.06 13.94 -14.31 -0.20 -10.26 16 8 N -0.66 -8.89 5.30 -9.82 -0.05 -8.94 16 9 C 0.03 0.58 6.30 -83.62 -0.53 0.05 16 10 C -0.09 -1.58 9.96 -39.42 -0.39 -1.98 16 11 C -0.18 -3.72 9.98 -39.42 -0.39 -4.11 16 12 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 13 O -0.18 -5.06 9.76 -0.02 0.00 -5.06 16 14 C -0.39 -11.10 9.48 30.88 0.29 -10.81 16 15 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 17 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 18 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.22 -5.06 9.16 -39.42 -0.36 -5.43 16 23 C -0.06 -1.31 8.69 -39.42 -0.34 -1.65 16 24 H 0.07 0.36 7.73 -51.93 -0.40 -0.05 16 25 H 0.08 0.44 7.78 -51.93 -0.40 0.03 16 26 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.34 1.77 8.73 -39.29 -0.34 1.43 16 28 H 0.37 2.39 9.25 -39.30 -0.36 2.02 16 29 H 0.40 3.72 8.45 -40.82 -0.35 3.37 16 30 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.13 3.01 5.63 -52.48 -0.30 2.71 16 34 H 0.12 2.56 6.23 -52.49 -0.33 2.24 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -35.39 300.69 -5.19 -40.57 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.58 Total: 8.27 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.90 Total: -12.33 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 1.36 Total: -38.56 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.58 Total: -18.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.39 -5.19 -40.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708693680.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.963 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds