Wall clock time and date at job start Mon Mar 30 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46723 * 2 1 4 4 N 1.46496 * 109.47366 * 240.00131 * 2 1 3 5 5 C 1.34783 * 119.99747 * 84.99914 * 4 2 1 6 6 O 1.21437 * 120.00316 * 359.97438 * 5 4 2 7 7 C 1.48833 * 119.99652 * 180.02562 * 5 4 2 8 8 O 1.21500 * 120.00004 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99938 * 180.02562 * 7 5 4 10 10 C 1.36121 * 120.00111 * 179.97438 * 9 7 5 11 11 H 1.07998 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.39586 * 119.99853 * 179.97438 * 10 9 7 13 13 N 1.31018 * 120.00158 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99808 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47238 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47216 * 119.99886 * 14 12 10 17 17 H 1.48504 * 109.46856 * 240.00180 * 14 12 10 18 18 C 1.50697 * 109.47149 * 119.99947 * 2 1 3 19 19 C 1.34675 * 125.99161 * 275.00223 * 18 2 1 20 20 N 1.36874 * 106.81768 * 179.73552 * 19 18 2 21 21 C 1.46504 * 126.39529 * 179.97438 * 20 19 18 22 22 C 1.35046 * 107.21025 * 0.02562 * 20 19 18 23 23 N 1.30499 * 108.69457 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47300 * 299.99657 * 1 2 3 25 25 H 1.08998 * 109.47193 * 60.00257 * 1 2 3 26 26 H 1.09006 * 109.46723 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00531 * 264.99629 * 4 2 1 28 28 H 0.97006 * 119.99605 * 359.97438 * 9 7 5 29 29 H 0.97003 * 119.99780 * 180.02562 * 13 12 10 30 30 H 1.07999 * 126.58848 * 359.75440 * 19 18 2 31 31 H 1.09006 * 109.46843 * 90.00355 * 21 20 19 32 32 H 1.09001 * 109.46928 * 209.99634 * 21 20 19 33 33 H 1.08996 * 109.47351 * 329.99857 * 21 20 19 34 34 H 1.08000 * 125.65569 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0181 -2.3571 6 8 1.8578 1.1600 -2.4118 7 6 2.6427 -0.7198 -3.5725 8 8 2.9317 -1.8987 -3.5179 9 7 2.7719 -0.0473 -4.7333 10 6 3.2257 -0.6890 -5.8447 11 1 3.4826 -1.7368 -5.7963 12 6 3.3590 0.0075 -7.0471 13 7 3.0469 1.2786 -7.1060 14 14 3.9825 -0.8729 -8.5721 15 1 4.2636 -2.2935 -8.2435 16 1 2.9514 -0.8058 -9.6387 17 1 5.2286 -0.2191 -9.0464 18 6 2.0323 -0.7104 1.2304 19 6 2.2066 -0.1592 2.4468 20 7 2.6688 -1.1514 3.2686 21 6 3.0018 -1.0188 4.6891 22 6 2.7616 -2.2751 2.5253 23 7 2.3791 -2.0038 1.3075 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2491 -1.6317 -1.1527 28 1 2.5415 0.8940 -4.7767 29 1 3.1392 1.7624 -7.9417 30 1 2.0176 0.8681 2.7211 31 1 2.1177 -1.2298 5.2908 32 1 3.7920 -1.7250 4.9445 33 1 3.3436 -0.0033 4.8890 34 1 3.0967 -3.2386 2.8799 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710062508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:43 Heat of formation + Delta-G solvation = -8.348652 kcal Electronic energy + Delta-G solvation = -19446.802091 eV Core-core repulsion = 16188.081611 eV Total energy + Delta-G solvation = -3258.720480 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21984 -39.36267 -37.22829 -35.50187 -34.18567 -33.57091 -31.36180 -30.77078 -28.84631 -27.13066 -25.81040 -23.91603 -22.25264 -21.36704 -19.89186 -19.19270 -18.24302 -17.50402 -16.51770 -15.91319 -15.82331 -14.99342 -14.62570 -14.52988 -14.29942 -13.87893 -13.74574 -13.59861 -13.18044 -13.04148 -12.85595 -12.61997 -12.06652 -11.88667 -11.67681 -11.15427 -11.07906 -10.41186 -10.33222 -10.22704 -10.05367 -9.71998 -9.63720 -8.70183 -8.41311 -8.14041 -8.11848 -6.57462 -3.89445 1.88122 2.55991 2.60031 3.01297 3.20717 3.22578 3.29936 3.60712 4.15129 4.32525 4.40506 4.45378 4.71104 4.72061 4.97384 5.00446 5.20476 5.28394 5.37936 5.52092 5.60632 5.86986 5.99608 6.11758 6.21765 6.36142 6.55465 6.97097 7.04242 7.40654 7.83679 7.98327 8.09617 8.46458 8.77986 9.07521 9.43362 9.96880 10.57885 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.003652 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.329544 B = 7665.928595 C = 8011.640804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.228 3.772 3 H 0.096 0.904 4 N -0.700 5.700 5 C 0.514 3.486 6 O -0.551 6.551 7 C 0.399 3.601 8 O -0.593 6.593 9 N -0.503 5.503 10 C -0.304 4.304 11 H 0.112 0.888 12 C 0.029 3.971 13 N -0.872 5.872 14 Si 0.937 3.063 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.001 3.999 19 C -0.048 4.048 20 N -0.466 5.466 21 C 0.074 3.926 22 C 0.183 3.817 23 N -0.480 5.480 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.419 0.581 28 H 0.404 0.596 29 H 0.278 0.722 30 H 0.176 0.824 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 -1.731 21.716 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.122 3.878 3 H 0.114 0.886 4 N -0.354 5.354 5 C 0.298 3.702 6 O -0.429 6.429 7 C 0.183 3.817 8 O -0.481 6.481 9 N -0.138 5.138 10 C -0.435 4.435 11 H 0.130 0.870 12 C -0.177 4.177 13 N -0.510 5.510 14 Si 0.763 3.237 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.129 4.129 19 C -0.181 4.181 20 N -0.150 5.150 21 C -0.068 4.068 22 C -0.099 4.099 23 N -0.198 5.198 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.256 0.744 28 H 0.240 0.760 29 H 0.089 0.911 30 H 0.193 0.807 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.682 -2.053 21.072 21.238 hybrid contribution 0.321 0.341 0.139 0.488 sum -1.361 -1.712 21.211 21.324 Atomic orbital electron populations 1.22155 0.94450 1.02487 1.02337 1.19040 0.93619 0.95406 0.79756 0.88583 1.45632 1.66440 1.15433 1.07904 1.20674 0.77763 0.86652 0.85066 1.90665 1.50637 1.16113 1.85503 1.19008 0.90251 0.87956 0.84509 1.90593 1.57202 1.15553 1.84715 1.41552 1.51936 1.13121 1.07216 1.19919 1.40044 0.97240 0.86261 0.87008 1.25560 0.96711 0.95562 0.99858 1.69499 1.44667 1.08291 1.28587 0.85686 0.78330 0.79752 0.79943 1.18745 1.20370 1.20394 1.20718 1.06035 0.91363 0.94764 1.22321 1.09131 0.95350 0.91299 1.45405 1.49326 1.09871 1.10350 1.22027 1.02149 1.04442 0.78211 1.25009 1.05271 0.92530 0.87091 1.70100 1.16565 1.14783 1.18322 0.91995 0.91332 0.92215 0.74403 0.76032 0.91125 0.80678 0.90581 0.89425 0.89671 0.77757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.47 37.16 0.35 -1.84 16 2 C 0.23 3.62 3.03 -69.09 -0.21 3.41 16 3 H 0.10 1.53 7.58 -51.93 -0.39 1.14 16 4 N -0.70 -13.76 5.06 -55.56 -0.28 -14.04 16 5 C 0.51 11.94 7.83 -11.87 -0.09 11.85 16 6 O -0.55 -13.32 16.13 5.42 0.09 -13.23 16 7 C 0.40 10.64 7.82 -11.88 -0.09 10.55 16 8 O -0.59 -16.91 16.03 5.37 0.09 -16.83 16 9 N -0.50 -14.02 5.25 -11.59 -0.06 -14.08 16 10 C -0.30 -8.68 9.67 -15.15 -0.15 -8.83 16 11 H 0.11 3.27 7.15 -52.49 -0.38 2.89 16 12 C 0.03 0.78 5.51 -17.40 -0.10 0.69 16 13 N -0.87 -24.01 13.03 55.53 0.72 -23.29 16 14 Si 0.94 20.70 29.56 -169.99 -5.02 15.67 16 15 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.00 0.01 6.04 -82.85 -0.50 -0.49 16 19 C -0.05 -0.51 11.49 -16.56 -0.19 -0.71 16 20 N -0.47 -4.12 3.15 -125.99 -0.40 -4.52 16 21 C 0.07 0.29 11.18 59.85 0.67 0.96 16 22 C 0.18 1.96 12.56 -90.37 -1.14 0.82 16 23 N -0.48 -7.11 10.51 -10.87 -0.11 -7.22 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.42 8.51 7.47 -40.82 -0.30 8.20 16 28 H 0.40 11.28 7.35 -40.82 -0.30 10.98 16 29 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 30 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -34.81 307.46 -5.68 -40.49 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -3.89 Total: 16.00 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -1.44 Total: 16.41 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.13 Total: -63.15 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: 0.17 Total: -30.06 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.81 -5.68 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710062508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.141 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds