Wall clock time and date at job start Mon Mar 30 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46723 * 2 1 4 4 N 1.46496 * 109.47366 * 240.00131 * 2 1 3 5 5 C 1.34783 * 119.99747 * 84.99914 * 4 2 1 6 6 O 1.21437 * 120.00316 * 359.97438 * 5 4 2 7 7 C 1.48833 * 119.99652 * 180.02562 * 5 4 2 8 8 O 1.21500 * 120.00004 * 359.97438 * 7 5 4 9 9 N 1.34776 * 119.99938 * 180.02562 * 7 5 4 10 10 C 1.36121 * 120.00111 * 179.97438 * 9 7 5 11 11 H 1.07998 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.39586 * 119.99853 * 179.97438 * 10 9 7 13 13 N 1.31018 * 120.00158 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99808 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47238 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47216 * 119.99886 * 14 12 10 17 17 H 1.48504 * 109.46856 * 240.00180 * 14 12 10 18 18 C 1.50697 * 109.47149 * 119.99947 * 2 1 3 19 19 C 1.34675 * 125.99161 * 275.00223 * 18 2 1 20 20 N 1.36874 * 106.81768 * 179.73552 * 19 18 2 21 21 C 1.46504 * 126.39529 * 179.97438 * 20 19 18 22 22 C 1.35046 * 107.21025 * 0.02562 * 20 19 18 23 23 N 1.30499 * 108.69457 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47300 * 299.99657 * 1 2 3 25 25 H 1.08998 * 109.47193 * 60.00257 * 1 2 3 26 26 H 1.09006 * 109.46723 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00531 * 264.99629 * 4 2 1 28 28 H 0.97006 * 119.99605 * 359.97438 * 9 7 5 29 29 H 0.97003 * 119.99780 * 180.02562 * 13 12 10 30 30 H 1.07999 * 126.58848 * 359.75440 * 19 18 2 31 31 H 1.09006 * 109.46843 * 90.00355 * 21 20 19 32 32 H 1.09001 * 109.46928 * 209.99634 * 21 20 19 33 33 H 1.08996 * 109.47351 * 329.99857 * 21 20 19 34 34 H 1.08000 * 125.65569 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0181 -2.3571 6 8 1.8578 1.1600 -2.4118 7 6 2.6427 -0.7198 -3.5725 8 8 2.9317 -1.8987 -3.5179 9 7 2.7719 -0.0473 -4.7333 10 6 3.2257 -0.6890 -5.8447 11 1 3.4826 -1.7368 -5.7963 12 6 3.3590 0.0075 -7.0471 13 7 3.0469 1.2786 -7.1060 14 14 3.9825 -0.8729 -8.5721 15 1 4.2636 -2.2935 -8.2435 16 1 2.9514 -0.8058 -9.6387 17 1 5.2286 -0.2191 -9.0464 18 6 2.0323 -0.7104 1.2304 19 6 2.2066 -0.1592 2.4468 20 7 2.6688 -1.1514 3.2686 21 6 3.0018 -1.0188 4.6891 22 6 2.7616 -2.2751 2.5253 23 7 2.3791 -2.0038 1.3075 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2491 -1.6317 -1.1527 28 1 2.5415 0.8940 -4.7767 29 1 3.1392 1.7624 -7.9417 30 1 2.0176 0.8681 2.7211 31 1 2.1177 -1.2298 5.2908 32 1 3.7920 -1.7250 4.9445 33 1 3.3436 -0.0033 4.8890 34 1 3.0967 -3.2386 2.8799 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710062508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:42 Heat of formation + Delta-G solvation = -34.247771 kcal Electronic energy + Delta-G solvation = -19447.925161 eV Core-core repulsion = 16188.081611 eV Total energy + Delta-G solvation = -3259.843550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.04226 -41.24868 -39.20769 -36.96333 -36.17741 -34.53638 -33.45766 -32.15961 -29.76696 -27.89763 -27.69031 -25.46971 -23.70951 -22.23699 -21.07609 -20.90862 -20.33581 -18.93336 -17.74448 -17.64867 -16.81364 -16.63193 -16.44955 -16.01432 -15.74091 -15.22038 -14.88201 -14.76335 -14.58788 -14.42267 -13.90455 -13.68075 -13.42136 -13.34723 -13.01217 -12.96428 -12.55626 -12.29434 -12.22678 -12.07366 -11.67034 -10.97318 -10.50553 -10.27020 -10.23822 -10.18726 -9.34236 -8.64884 -6.09778 0.62195 1.09783 1.41581 1.46698 1.57821 1.80928 2.02145 2.14274 2.32528 2.39743 3.16244 3.27973 3.53595 3.93533 4.04338 4.12026 4.18827 4.31409 4.35842 4.51136 4.66673 4.76226 4.78352 4.90107 5.20479 5.26324 5.27883 5.43044 5.67354 5.71676 6.21743 6.33655 6.43425 6.82631 7.02013 7.17016 7.29890 7.82157 8.51400 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.042716 B = 0.003652 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.329544 B = 7665.928595 C = 8011.640804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.224 3.776 3 H 0.094 0.906 4 N -0.685 5.685 5 C 0.520 3.480 6 O -0.564 6.564 7 C 0.389 3.611 8 O -0.618 6.618 9 N -0.510 5.510 10 C -0.346 4.346 11 H 0.097 0.903 12 C -0.005 4.005 13 N -0.896 5.896 14 Si 1.011 2.989 15 H -0.265 1.265 16 H -0.264 1.264 17 H -0.265 1.265 18 C -0.040 4.040 19 C -0.030 4.030 20 N -0.459 5.459 21 C 0.067 3.933 22 C 0.183 3.817 23 N -0.533 5.533 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.415 0.585 28 H 0.401 0.599 29 H 0.289 0.711 30 H 0.206 0.794 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -1.654 23.353 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.119 3.881 3 H 0.112 0.888 4 N -0.336 5.336 5 C 0.303 3.697 6 O -0.444 6.444 7 C 0.174 3.826 8 O -0.508 6.508 9 N -0.144 5.144 10 C -0.476 4.476 11 H 0.114 0.886 12 C -0.209 4.209 13 N -0.533 5.533 14 Si 0.832 3.168 15 H -0.189 1.189 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.168 4.168 19 C -0.166 4.166 20 N -0.141 5.141 21 C -0.073 4.073 22 C -0.100 4.100 23 N -0.252 5.252 24 H 0.114 0.886 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.252 0.748 28 H 0.236 0.764 29 H 0.099 0.901 30 H 0.222 0.778 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.373 -1.959 22.777 22.903 hybrid contribution 0.223 0.320 -0.211 0.443 sum -1.150 -1.640 22.567 22.655 Atomic orbital electron populations 1.22080 0.93180 1.02234 1.03006 1.19279 0.94632 0.95153 0.78990 0.88811 1.45678 1.64762 1.15159 1.08042 1.20029 0.78227 0.86359 0.85112 1.90650 1.51726 1.16315 1.85712 1.19661 0.89684 0.87894 0.85388 1.90551 1.58189 1.16648 1.85375 1.41634 1.52138 1.12922 1.07718 1.20015 1.42810 0.97125 0.87607 0.88554 1.26553 0.95735 0.96245 1.02378 1.69560 1.44244 1.09464 1.30074 0.84631 0.78331 0.78283 0.75574 1.18913 1.18910 1.18928 1.20512 1.09256 0.91895 0.95169 1.22683 1.06935 0.96627 0.90308 1.45683 1.47707 1.08729 1.11931 1.22400 1.03624 1.06041 0.75264 1.25583 1.04029 0.94079 0.86274 1.69987 1.18669 1.15560 1.21024 0.88567 0.93286 0.92866 0.74809 0.76399 0.90075 0.77771 0.88956 0.87513 0.88266 0.74651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.47 71.98 0.68 -3.39 16 2 C 0.22 7.11 3.03 44.24 0.13 7.24 16 3 H 0.09 2.98 7.58 -2.38 -0.02 2.96 16 4 N -0.68 -27.66 5.06 -448.02 -2.27 -29.92 16 5 C 0.52 24.94 7.83 87.08 0.68 25.62 16 6 O -0.56 -27.97 16.13 -3.52 -0.06 -28.02 16 7 C 0.39 21.59 7.82 87.08 0.68 22.27 16 8 O -0.62 -36.69 16.03 -3.72 -0.06 -36.75 16 9 N -0.51 -29.51 5.25 -308.87 -1.62 -31.13 16 10 C -0.35 -20.34 9.67 84.35 0.82 -19.52 16 11 H 0.10 5.86 7.15 -2.91 -0.02 5.83 16 12 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 13 N -0.90 -49.42 13.03 21.77 0.28 -49.14 16 14 Si 1.01 42.13 29.56 68.60 2.03 44.15 16 15 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 18 C -0.04 -1.09 6.04 41.39 0.25 -0.84 16 19 C -0.03 -0.58 11.49 83.09 0.95 0.38 16 20 N -0.46 -6.76 3.15 -552.52 -1.74 -8.50 16 21 C 0.07 0.27 11.18 127.77 1.43 1.69 16 22 C 0.18 3.55 12.56 180.26 2.26 5.82 16 23 N -0.53 -15.54 10.51 -188.31 -1.98 -17.52 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.42 17.50 7.47 -92.71 -0.69 16.81 16 28 H 0.40 23.25 7.35 -92.70 -0.68 22.57 16 29 H 0.29 14.50 8.30 -92.71 -0.77 13.73 16 30 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.24 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -77.62 307.46 2.72 -74.90 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.22 Total: 42.46 kcal Atomic # 6 Polarization: 31.10 SS G_CDS: 8.36 Total: 39.46 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -7.33 Total: -136.21 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -0.12 Total: -64.77 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -77.62 2.72 -74.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710062508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.653 kcal (2) G-P(sol) polarization free energy of solvation -77.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds