Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36924 * 125.63759 * 2 1 4 4 C 1.35258 * 107.87650 * 179.97438 * 3 2 1 5 5 C 1.46469 * 126.39770 * 179.97438 * 4 3 2 6 6 O 1.21631 * 120.00302 * 180.02562 * 5 4 3 7 7 O 1.34893 * 119.99818 * 0.02562 * 5 4 3 8 8 N 1.39880 * 107.21199 * 0.02562 * 4 3 2 9 9 C 1.46503 * 126.19044 * 179.73847 * 8 4 3 10 10 C 1.52991 * 109.47121 * 90.19759 * 9 8 4 11 11 C 1.50702 * 115.54821 * 185.89738 * 10 9 8 12 12 H 1.08007 * 120.00069 * 144.60796 * 11 10 9 13 13 C 1.37876 * 120.00077 * 324.60092 * 11 10 9 14 14 N 1.31517 * 120.00112 * 350.91633 * 13 11 10 15 15 Si 1.86800 * 120.00120 * 170.91628 * 13 11 10 16 16 H 1.48496 * 109.46931 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47389 * 120.00511 * 15 13 11 18 18 H 1.48507 * 109.46664 * 240.00105 * 15 13 11 19 19 C 1.53005 * 117.49871 * 40.22761 * 10 9 8 20 20 C 1.53001 * 117.50075 * 331.56902 * 10 9 8 21 21 C 1.34614 * 125.63388 * 179.97438 * 2 1 3 22 22 O 1.21718 * 125.71925 * 0.04630 * 21 2 1 23 23 H 1.09001 * 109.47119 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47161 * 119.97501 * 1 2 3 25 25 H 1.08997 * 109.47518 * 239.97774 * 1 2 3 26 26 H 1.08006 * 126.06469 * 359.95270 * 3 2 1 27 27 H 0.96697 * 117.00016 * 180.02562 * 7 5 4 28 28 H 1.08997 * 109.46570 * 210.20156 * 9 8 4 29 29 H 1.08998 * 109.46457 * 330.19933 * 9 8 4 30 30 H 0.96991 * 120.00266 * 185.00381 * 14 13 11 31 31 H 1.08992 * 117.49675 * 0.02562 * 19 10 9 32 32 H 1.09001 * 117.49439 * 145.01860 * 19 10 9 33 33 H 1.08999 * 117.49476 * 214.97786 * 20 10 9 34 34 H 1.08999 * 117.50152 * 359.97262 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2628 1.1128 0.0000 4 6 3.5509 0.7002 0.0006 5 6 4.7383 1.5578 0.0003 6 8 5.8481 1.0601 0.0004 7 8 4.6009 2.8998 -0.0002 8 7 3.5375 -0.6985 0.0003 9 6 4.7115 -1.5749 -0.0046 10 6 5.1231 -1.8842 1.4361 11 6 6.4024 -2.6651 1.5931 12 1 7.0591 -2.4638 2.4266 13 6 6.7345 -3.6366 0.6729 14 7 5.8598 -4.0075 -0.2365 15 14 8.4268 -4.4261 0.7177 16 1 9.2184 -3.8374 1.8276 17 1 8.2852 -5.8888 0.9314 18 1 9.1224 -4.1793 -0.5710 19 6 4.0066 -2.1461 2.4490 20 6 4.7988 -0.8374 2.5037 21 6 2.2493 -1.0941 0.0005 22 8 1.8601 -2.2474 0.0002 23 1 -0.3633 1.0277 0.0005 24 1 -0.3633 -0.5134 -0.8902 25 1 -0.3634 -0.5142 0.8897 26 1 1.9237 2.1383 -0.0007 27 1 5.4133 3.4242 -0.0008 28 1 4.4692 -2.5038 -0.5208 29 1 5.5339 -1.0774 -0.5186 30 1 6.0659 -4.7404 -0.8373 31 1 2.9790 -2.0984 2.0888 32 1 4.1977 -2.8830 3.2292 33 1 5.5105 -0.7139 3.3199 34 1 4.2926 0.0719 2.1797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710304983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -55.930202 kcal Electronic energy + Delta-G solvation = -21177.464234 eV Core-core repulsion = 17884.387712 eV Total energy + Delta-G solvation = -3293.076522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.52536 -40.74487 -38.80117 -37.89466 -36.90817 -35.55881 -34.25364 -31.38534 -29.17535 -27.99116 -26.82086 -24.90852 -23.21877 -22.18188 -21.93886 -20.64484 -18.90242 -18.68498 -18.30854 -17.63742 -17.32901 -16.64079 -16.34812 -16.07128 -15.97826 -15.71201 -15.20896 -14.49087 -14.19627 -14.12388 -13.74680 -13.50465 -13.20564 -12.94401 -12.87853 -12.63767 -12.39777 -12.36494 -12.07824 -11.79260 -11.71975 -11.44954 -11.02590 -10.86091 -10.59167 -10.05065 -8.79742 -8.14631 -6.27893 0.24387 1.21864 1.39267 1.41073 1.53829 1.79654 1.80814 2.07024 2.37594 2.84563 2.94963 3.53871 3.80856 4.10390 4.19162 4.28681 4.43288 4.52311 4.52378 4.52599 4.79150 4.81499 4.86273 4.92734 5.14952 5.23185 5.37264 5.44096 5.53776 5.67535 5.76213 5.86533 6.29843 6.38151 6.72477 7.08183 7.26091 7.34865 8.86504 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021268 B = 0.007713 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.207745 B = 3629.291414 C = 4362.783866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.517 5.517 3 C 0.128 3.872 4 C -0.082 4.082 5 C 0.561 3.439 6 O -0.538 6.538 7 O -0.488 6.488 8 N -0.509 5.509 9 C 0.184 3.816 10 C 0.024 3.976 11 C -0.510 4.510 12 H 0.058 0.942 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.275 1.275 19 C -0.205 4.205 20 C -0.176 4.176 21 C 0.627 3.373 22 O -0.607 6.607 23 H 0.145 0.855 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.259 0.741 27 H 0.438 0.562 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.266 0.734 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 17.219 -1.371 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.233 5.233 3 C -0.003 4.003 4 C -0.187 4.187 5 C 0.405 3.595 6 O -0.428 6.428 7 O -0.302 6.302 8 N -0.228 5.228 9 C 0.063 3.937 10 C 0.022 3.978 11 C -0.548 4.548 12 H 0.076 0.924 13 C -0.180 4.180 14 N -0.548 5.548 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.201 1.201 19 C -0.243 4.243 20 C -0.213 4.213 21 C 0.330 3.670 22 O -0.487 6.487 23 H 0.163 0.837 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.275 0.725 27 H 0.300 0.700 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.748 15.892 -1.578 18.710 hybrid contribution 1.491 -0.761 0.103 1.677 sum -8.256 15.131 -1.475 17.300 Atomic orbital electron populations 1.22242 0.71927 1.07232 1.03682 1.45372 1.09478 1.05284 1.63128 1.23093 0.85729 0.94682 0.96772 1.18722 0.93971 0.83184 1.22836 1.18997 0.86333 0.81759 0.72380 1.91051 1.28418 1.76030 1.47335 1.84415 1.44144 1.15864 1.85742 1.45861 1.07194 1.05482 1.64279 1.21192 0.82554 0.92090 0.97819 1.19343 0.93956 0.96758 0.87705 1.20816 1.04183 1.19543 1.10212 0.92399 1.25857 1.00929 0.96916 0.94332 1.69928 1.35820 1.27955 1.21055 0.85351 0.79222 0.77860 0.78303 1.19057 1.20309 1.20061 1.22888 0.96437 0.99316 1.05688 1.22792 1.03245 0.92053 1.03191 1.16470 0.81418 0.85392 0.83741 1.90990 1.77199 1.18626 1.61919 0.83665 0.90639 0.91024 0.72517 0.69983 0.88687 0.91362 0.92461 0.91881 0.91645 0.90644 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 11.03 127.77 1.41 2.85 16 2 N -0.52 -14.12 3.12 -679.65 -2.12 -16.24 16 3 C 0.13 2.75 11.16 83.21 0.93 3.68 16 4 C -0.08 -2.66 5.21 39.31 0.20 -2.45 16 5 C 0.56 17.14 7.86 69.97 0.55 17.69 16 6 O -0.54 -21.97 15.62 19.41 0.30 -21.67 16 7 O -0.49 -8.45 13.24 -58.08 -0.77 -9.22 16 8 N -0.51 -22.27 1.95 -643.72 -1.25 -23.52 16 9 C 0.18 9.91 4.81 86.38 0.42 10.32 16 10 C 0.02 1.30 2.38 -52.93 -0.13 1.18 16 11 C -0.51 -30.21 9.05 25.60 0.23 -29.98 16 12 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 13 C 0.02 1.13 5.27 84.65 0.45 1.58 16 14 N -0.91 -54.96 10.70 21.45 0.23 -54.73 16 15 Si 0.97 45.47 29.55 68.60 2.03 47.49 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.21 -10.82 9.64 30.62 0.30 -10.52 16 20 C -0.18 -8.42 9.59 30.62 0.29 -8.12 16 21 C 0.63 26.66 7.01 179.11 1.26 27.92 16 22 O -0.61 -31.63 16.86 -4.41 -0.07 -31.71 16 23 H 0.15 0.71 8.06 -2.39 -0.02 0.69 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.26 1.93 8.06 -2.91 -0.02 1.90 16 27 H 0.44 3.81 9.11 -74.06 -0.67 3.14 16 28 H 0.10 5.86 5.93 -2.39 -0.01 5.84 16 29 H 0.07 3.83 6.45 -2.39 -0.02 3.82 16 30 H 0.27 15.15 8.32 -92.71 -0.77 14.38 16 31 H 0.06 3.37 5.62 -2.39 -0.01 3.36 16 32 H 0.06 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.08 3.57 5.53 -2.39 -0.01 3.55 16 Total: -1.00 -85.87 292.81 4.72 -81.15 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.48 Total: 14.30 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.90 Total: 14.14 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.14 Total: -94.49 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -0.54 Total: -62.60 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -85.87 4.72 -81.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710304983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.220 kcal (2) G-P(sol) polarization free energy of solvation -85.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds