Wall clock time and date at job start Mon Mar 30 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47354 * 2 1 4 4 C 1.46497 * 119.99929 * 269.99674 * 3 2 1 5 5 C 1.50695 * 109.47564 * 270.00296 * 4 3 2 6 6 H 1.07997 * 120.00054 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00300 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47139 * 89.99810 * 9 7 5 11 11 H 1.48504 * 109.47338 * 209.99681 * 9 7 5 12 12 H 1.48500 * 109.47194 * 330.00113 * 9 7 5 13 13 C 1.34771 * 120.00163 * 90.00339 * 3 2 1 14 14 O 1.21617 * 120.00472 * 180.02562 * 13 3 2 15 15 C 1.47300 * 119.99827 * 359.97438 * 13 3 2 16 16 C 1.40435 * 120.22745 * 270.00351 * 15 13 3 17 17 N 1.38887 * 120.16137 * 0.02562 * 16 15 13 18 18 C 1.38831 * 119.67327 * 179.74606 * 16 15 13 19 19 C 1.38075 * 120.13795 * 0.24905 * 18 16 15 20 20 C 1.38434 * 120.47009 * 0.02562 * 19 18 16 21 21 C 1.38146 * 120.31649 * 359.97429 * 20 19 18 22 22 F 1.35097 * 120.06977 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.46797 * 59.99511 * 1 2 3 24 24 H 1.08990 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46587 * 300.00437 * 1 2 3 26 26 H 1.09006 * 109.46960 * 239.99670 * 2 1 3 27 27 H 1.08997 * 109.46797 * 120.00489 * 2 1 3 28 28 H 1.09000 * 109.47305 * 30.00521 * 4 3 2 29 29 H 1.08997 * 109.47203 * 150.00068 * 4 3 2 30 30 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00184 * 179.72800 * 17 16 15 32 32 H 0.97005 * 120.00090 * 359.44600 * 17 16 15 33 33 H 1.08000 * 119.92852 * 180.22804 * 18 16 15 34 34 H 1.08001 * 119.76751 * 180.02562 * 19 18 16 35 35 H 1.07998 * 119.84263 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2300 -1.0963 7 6 4.1495 2.3903 -2.8775 8 7 3.3496 3.1264 -3.6176 9 14 5.9139 2.0972 -3.4164 10 1 5.9777 0.8765 -4.2596 11 1 6.3930 3.2649 -4.1989 12 1 6.7738 1.9172 -2.2191 13 6 2.2432 2.0165 1.1671 14 8 2.6481 3.1632 1.1672 15 6 1.9972 1.3223 2.4428 16 6 0.7352 1.3940 3.0548 17 7 -0.2886 2.1199 2.4600 18 6 0.5145 0.7309 4.2544 19 6 1.5325 0.0089 4.8449 20 6 2.7804 -0.0610 4.2496 21 6 3.0211 0.5914 3.0560 22 9 4.2405 0.5194 2.4791 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5819 1.6877 -2.0284 29 1 2.0958 3.1409 -1.1384 30 1 3.6759 3.5175 -4.4431 31 1 -1.1605 2.1646 2.8828 32 1 -0.1306 2.5856 1.6238 33 1 -0.4555 0.7802 4.7268 34 1 1.3541 -0.5050 5.7780 35 1 3.5695 -0.6284 4.7206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714040531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:11 Heat of formation + Delta-G solvation = -54.855840 kcal Electronic energy + Delta-G solvation = -20711.566299 eV Core-core repulsion = 17430.909154 eV Total energy + Delta-G solvation = -3280.657145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -48.63975 -39.90671 -37.98309 -35.24565 -34.53830 -32.76783 -30.75654 -30.06713 -28.76928 -27.02949 -24.05514 -23.00909 -22.26164 -22.01417 -18.92929 -17.71234 -17.34639 -16.76605 -16.33022 -15.84367 -15.19452 -15.10850 -15.07830 -14.81809 -14.24376 -13.90422 -13.47579 -13.09279 -12.82583 -12.76889 -12.29516 -12.06265 -11.85626 -11.55758 -11.46026 -11.20109 -10.93393 -10.79667 -10.55255 -10.39854 -10.10699 -9.61518 -9.09945 -8.62259 -8.40790 -7.68419 -7.64386 -6.02469 -4.06426 1.16633 1.46906 3.23911 3.33210 3.39540 3.46397 3.61804 3.72180 3.97457 4.46434 4.48793 4.79518 4.98834 5.16231 5.31147 5.33448 5.42821 5.56028 5.67743 5.80674 5.94855 6.05107 6.13673 6.19482 6.25871 6.37438 6.51855 6.80377 7.05312 7.33584 7.40643 7.54202 7.64079 7.94540 8.25095 8.37895 8.89758 9.05862 9.58664 11.05739 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.006379 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.082137 B = 4388.270430 C = 4889.463771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.109 3.891 3 N -0.585 5.585 4 C 0.245 3.755 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.554 3.446 14 O -0.531 6.531 15 C -0.227 4.227 16 C 0.275 3.725 17 N -0.860 5.860 18 C -0.216 4.216 19 C -0.036 4.036 20 C -0.220 4.220 21 C 0.176 3.824 22 F -0.127 7.127 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.402 0.598 32 H 0.406 0.594 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 -8.341 14.492 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.316 5.316 4 C 0.126 3.874 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.340 3.660 14 O -0.408 6.408 15 C -0.236 4.236 16 C 0.167 3.833 17 N -0.398 5.398 18 C -0.239 4.239 19 C -0.055 4.055 20 C -0.241 4.241 21 C 0.155 3.845 22 F -0.105 7.105 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.236 0.764 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.809 -7.619 14.244 18.399 hybrid contribution 0.952 -0.023 -0.681 1.171 sum -7.856 -7.642 13.562 17.437 Atomic orbital electron populations 1.22334 0.96750 1.01630 1.02636 1.21369 0.93569 0.84039 1.02558 1.48283 1.62675 1.13269 1.07340 1.19320 0.96555 0.93545 0.77961 1.21449 0.96872 1.31808 1.06251 0.92317 1.24921 0.97901 0.94876 0.96355 1.69929 1.35708 1.33543 1.14369 0.86496 0.84720 0.77638 0.78621 1.20619 1.21088 1.19790 1.17769 0.78963 0.86208 0.83106 1.90792 1.45264 1.17707 1.87074 1.19574 0.94157 1.09222 1.00646 1.17294 0.86337 0.88967 0.90744 1.42494 1.12386 1.56350 1.28535 1.20505 1.00907 1.05699 0.96777 1.20700 0.91328 0.95249 0.98240 1.20766 0.99509 1.07051 0.96737 1.17419 0.79729 0.95600 0.91759 1.91563 1.40666 1.94239 1.84048 0.92251 0.92315 0.92124 0.89998 0.91922 0.94797 0.93873 0.92761 0.76942 0.76404 0.85410 0.85122 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.11 1.90 5.95 -4.04 -0.02 1.88 16 3 N -0.58 -12.82 2.46 -176.38 -0.43 -13.25 16 4 C 0.25 6.49 5.16 -5.20 -0.03 6.46 16 5 C -0.52 -15.32 9.39 -34.44 -0.32 -15.64 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.55 12.34 5.49 -12.58 -0.07 12.27 16 14 O -0.53 -14.23 16.69 5.26 0.09 -14.14 16 15 C -0.23 -4.02 3.93 -104.75 -0.41 -4.43 16 16 C 0.28 3.78 6.00 -83.62 -0.50 3.28 16 17 N -0.86 -10.07 7.34 32.54 0.24 -9.84 16 18 C -0.22 -2.32 9.87 -39.42 -0.39 -2.71 16 19 C -0.04 -0.37 10.02 -39.57 -0.40 -0.77 16 20 C -0.22 -2.80 10.00 -39.54 -0.40 -3.19 16 21 C 0.18 2.98 6.87 -38.98 -0.27 2.71 16 22 F -0.13 -2.49 16.83 2.25 0.04 -2.45 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.79 5.25 -51.93 -0.27 0.52 16 26 H 0.08 1.47 8.07 -51.93 -0.42 1.06 16 27 H 0.06 1.03 6.56 -51.93 -0.34 0.69 16 28 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.40 3.21 8.83 -40.82 -0.36 2.85 16 32 H 0.41 5.62 7.53 -40.82 -0.31 5.31 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -34.42 304.15 -6.46 -40.87 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.16 Total: 3.48 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.52 Total: -0.53 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.54 Total: -49.25 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.42 -6.46 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714040531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.983 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds