Wall clock time and date at job start Mon Mar 30 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47354 * 2 1 4 4 C 1.46497 * 119.99929 * 269.99674 * 3 2 1 5 5 C 1.50695 * 109.47564 * 270.00296 * 4 3 2 6 6 H 1.07997 * 120.00054 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00300 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47139 * 89.99810 * 9 7 5 11 11 H 1.48504 * 109.47338 * 209.99681 * 9 7 5 12 12 H 1.48500 * 109.47194 * 330.00113 * 9 7 5 13 13 C 1.34771 * 120.00163 * 90.00339 * 3 2 1 14 14 O 1.21617 * 120.00472 * 180.02562 * 13 3 2 15 15 C 1.47300 * 119.99827 * 359.97438 * 13 3 2 16 16 C 1.40435 * 120.22745 * 270.00351 * 15 13 3 17 17 N 1.38887 * 120.16137 * 0.02562 * 16 15 13 18 18 C 1.38831 * 119.67327 * 179.74606 * 16 15 13 19 19 C 1.38075 * 120.13795 * 0.24905 * 18 16 15 20 20 C 1.38434 * 120.47009 * 0.02562 * 19 18 16 21 21 C 1.38146 * 120.31649 * 359.97429 * 20 19 18 22 22 F 1.35097 * 120.06977 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.46797 * 59.99511 * 1 2 3 24 24 H 1.08990 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46587 * 300.00437 * 1 2 3 26 26 H 1.09006 * 109.46960 * 239.99670 * 2 1 3 27 27 H 1.08997 * 109.46797 * 120.00489 * 2 1 3 28 28 H 1.09000 * 109.47305 * 30.00521 * 4 3 2 29 29 H 1.08997 * 109.47203 * 150.00068 * 4 3 2 30 30 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00184 * 179.72800 * 17 16 15 32 32 H 0.97005 * 120.00090 * 359.44600 * 17 16 15 33 33 H 1.08000 * 119.92852 * 180.22804 * 18 16 15 34 34 H 1.08001 * 119.76751 * 180.02562 * 19 18 16 35 35 H 1.07998 * 119.84263 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2300 -1.0963 7 6 4.1495 2.3903 -2.8775 8 7 3.3496 3.1264 -3.6176 9 14 5.9139 2.0972 -3.4164 10 1 5.9777 0.8765 -4.2596 11 1 6.3930 3.2649 -4.1989 12 1 6.7738 1.9172 -2.2191 13 6 2.2432 2.0165 1.1671 14 8 2.6481 3.1632 1.1672 15 6 1.9972 1.3223 2.4428 16 6 0.7352 1.3940 3.0548 17 7 -0.2886 2.1199 2.4600 18 6 0.5145 0.7309 4.2544 19 6 1.5325 0.0089 4.8449 20 6 2.7804 -0.0610 4.2496 21 6 3.0211 0.5914 3.0560 22 9 4.2405 0.5194 2.4791 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5819 1.6877 -2.0284 29 1 2.0958 3.1409 -1.1384 30 1 3.6759 3.5175 -4.4431 31 1 -1.1605 2.1646 2.8828 32 1 -0.1306 2.5856 1.6238 33 1 -0.4555 0.7802 4.7268 34 1 1.3541 -0.5050 5.7780 35 1 3.5695 -0.6284 4.7206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714040531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:07 Heat of formation + Delta-G solvation = -79.218840 kcal Electronic energy + Delta-G solvation = -20712.622758 eV Core-core repulsion = 17430.909154 eV Total energy + Delta-G solvation = -3281.713604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -49.97677 -41.31034 -39.35319 -37.02486 -35.53635 -34.92036 -32.02296 -31.61167 -29.82223 -28.92826 -25.70219 -24.61358 -23.51571 -23.26344 -20.45463 -18.93434 -18.66602 -18.38483 -18.13984 -17.53259 -16.65847 -16.34825 -16.29749 -16.15781 -15.81381 -15.53963 -14.82388 -14.60283 -14.32297 -13.95709 -13.86354 -13.66789 -13.31691 -13.13515 -12.84638 -12.70239 -12.57017 -12.53090 -12.25711 -12.03888 -11.78105 -11.44768 -10.84045 -10.68155 -9.77031 -9.55135 -8.63447 -8.27551 -6.41858 0.09531 0.47108 1.31643 1.35011 1.45437 1.58402 2.24014 2.38532 2.68459 2.75478 3.01706 3.37600 3.55748 4.00095 4.07223 4.15630 4.37379 4.45850 4.52887 4.60165 4.84096 4.92030 4.96857 5.00936 5.10520 5.16747 5.24373 5.32527 5.46305 5.51383 5.77882 5.83341 6.01316 6.29306 6.60598 6.67691 6.81626 7.19504 7.35163 8.79620 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.006379 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.082137 B = 4388.270430 C = 4889.463771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.587 5.587 4 C 0.262 3.738 5 C -0.548 4.548 6 H 0.044 0.956 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.554 3.446 14 O -0.595 6.595 15 C -0.261 4.261 16 C 0.272 3.728 17 N -0.853 5.853 18 C -0.197 4.197 19 C -0.017 4.017 20 C -0.211 4.211 21 C 0.137 3.863 22 F -0.157 7.157 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.002 0.998 30 H 0.269 0.731 31 H 0.421 0.579 32 H 0.394 0.606 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 -10.568 16.923 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.317 5.317 4 C 0.141 3.859 5 C -0.586 4.586 6 H 0.062 0.938 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.204 1.204 13 C 0.342 3.658 14 O -0.477 6.477 15 C -0.271 4.271 16 C 0.163 3.837 17 N -0.391 5.391 18 C -0.219 4.219 19 C -0.035 4.035 20 C -0.232 4.232 21 C 0.117 3.883 22 F -0.136 7.136 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.020 0.980 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.221 0.779 33 H 0.189 0.811 34 H 0.199 0.801 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.178 -9.897 16.693 21.914 hybrid contribution 1.272 0.652 -1.342 1.961 sum -8.906 -9.245 15.351 20.011 Atomic orbital electron populations 1.22243 0.93599 1.03743 1.02579 1.21612 0.96102 0.81427 1.02643 1.48279 1.62599 1.14767 1.06015 1.18782 0.95417 0.91658 0.80079 1.21661 0.97976 1.32294 1.06714 0.93783 1.25799 1.02392 0.94311 0.96221 1.70028 1.37652 1.33894 1.14759 0.85457 0.78987 0.78546 0.78093 1.18458 1.20013 1.20435 1.18514 0.77134 0.85525 0.84602 1.90728 1.48087 1.20648 1.88203 1.19300 0.96764 1.11817 0.99187 1.17524 0.85115 0.89410 0.91679 1.42496 1.13030 1.55563 1.27981 1.21029 1.02874 1.03290 0.94739 1.21308 0.89520 0.93600 0.99083 1.21110 1.01433 1.05838 0.94799 1.17933 0.78705 0.97934 0.93752 1.91478 1.42490 1.94728 1.84899 0.93513 0.88979 0.90986 0.91109 0.90545 0.95241 0.98023 0.92218 0.74661 0.77880 0.81097 0.80128 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 10.24 71.98 0.74 -3.67 16 2 C 0.10 3.73 5.95 86.38 0.51 4.25 16 3 N -0.59 -27.24 2.46 -830.20 -2.04 -29.28 16 4 C 0.26 14.81 5.16 85.63 0.44 15.26 16 5 C -0.55 -33.65 9.39 25.60 0.24 -33.41 16 6 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.73 5.46 84.65 0.46 1.19 16 8 N -0.92 -57.11 13.29 21.45 0.28 -56.82 16 9 Si 0.97 47.09 29.54 68.60 2.03 49.11 16 10 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 13 C 0.55 26.12 5.49 86.63 0.48 26.59 16 14 O -0.60 -34.40 16.69 -4.08 -0.07 -34.46 16 15 C -0.26 -9.34 3.93 -19.94 -0.08 -9.42 16 16 C 0.27 6.90 6.00 38.70 0.23 7.14 16 17 N -0.85 -18.67 7.34 -50.96 -0.37 -19.04 16 18 C -0.20 -3.21 9.87 22.37 0.22 -2.99 16 19 C -0.02 -0.25 10.02 22.28 0.22 -0.02 16 20 C -0.21 -4.74 10.00 22.29 0.22 -4.51 16 21 C 0.14 4.64 6.87 22.66 0.16 4.80 16 22 F -0.16 -6.49 16.83 44.97 0.76 -5.74 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 1.77 5.25 -2.39 -0.01 1.76 16 26 H 0.07 2.64 8.07 -2.38 -0.02 2.62 16 27 H 0.08 2.52 6.56 -2.39 -0.02 2.51 16 28 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 29 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.42 5.50 8.83 -92.71 -0.82 4.68 16 32 H 0.39 11.04 7.53 -92.70 -0.70 10.34 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -82.06 304.15 4.05 -78.01 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -0.38 Total: 13.04 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 3.85 Total: 5.18 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -2.13 Total: -105.14 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.07 Total: -34.46 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.76 Total: -5.74 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -82.06 4.05 -78.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714040531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.213 kcal (2) G-P(sol) polarization free energy of solvation -82.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds