Wall clock time and date at job start Mon Mar 30 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21622 * 120.00192 * 359.97438 * 14 12 2 16 16 C 1.47293 * 119.99876 * 179.97438 * 14 12 2 17 17 C 1.40435 * 120.22745 * 89.72833 * 16 14 12 18 18 N 1.38880 * 120.16098 * 359.97438 * 17 16 14 19 19 C 1.38842 * 119.66900 * 179.69960 * 17 16 14 20 20 C 1.38080 * 120.14224 * 0.57367 * 19 17 16 21 21 C 1.38429 * 120.46226 * 359.71899 * 20 19 17 22 22 C 1.38139 * 120.32576 * 359.97438 * 21 20 19 23 23 F 1.35095 * 120.07455 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 29 29 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 30 30 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 31 31 H 0.96999 * 120.00209 * 0.02562 * 18 17 16 32 32 H 0.97002 * 119.99578 * 179.97438 * 18 17 16 33 33 H 1.08011 * 119.92690 * 180.28907 * 19 17 16 34 34 H 1.07994 * 119.76645 * 179.69734 * 20 19 17 35 35 H 1.07999 * 119.83777 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0874 1.1286 1.8906 16 6 3.2838 -0.7299 3.2861 17 6 4.5073 -1.4186 3.2554 18 7 5.2616 -1.4493 2.0897 19 6 4.9617 -2.0638 4.3977 20 6 4.2083 -2.0381 5.5546 21 6 2.9985 -1.3661 5.5895 22 6 2.5311 -0.7124 4.4659 23 9 1.3495 -0.0587 4.5055 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9845 31 1 4.9440 -0.9941 1.2943 32 1 6.1066 -1.9254 2.0713 33 1 5.9043 -2.5908 4.3801 34 1 4.5652 -2.5461 6.4383 35 1 2.4176 -1.3522 6.4999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714041057.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:09 Heat of formation + Delta-G solvation = -52.977636 kcal Electronic energy + Delta-G solvation = -20653.428064 eV Core-core repulsion = 17372.852364 eV Total energy + Delta-G solvation = -3280.575700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -48.71492 -39.83866 -38.05116 -35.29884 -34.45230 -32.87574 -30.88042 -29.18907 -28.56245 -26.13398 -25.23447 -23.80823 -22.25233 -21.06102 -18.76625 -17.70682 -17.34488 -16.82729 -16.24297 -15.79512 -15.22969 -15.16212 -15.06671 -14.77352 -14.24207 -14.00679 -13.09899 -12.87045 -12.82174 -12.59841 -12.33283 -11.81457 -11.60331 -11.51414 -11.47285 -11.09557 -10.82968 -10.71952 -10.59186 -10.26499 -10.19593 -9.20003 -9.11528 -8.64506 -8.45305 -7.62447 -7.59563 -6.09707 -4.18308 1.16282 1.48596 3.20552 3.23213 3.31351 3.33531 3.63015 3.78234 3.97856 4.36700 4.45892 4.81557 5.05089 5.16153 5.21421 5.34684 5.57839 5.79265 5.95339 6.06369 6.10571 6.18458 6.32225 6.38253 6.76978 6.82081 6.85457 7.05937 7.38691 7.44060 7.49856 7.68106 7.74229 7.99313 8.16325 8.48601 8.79097 8.99410 9.48358 10.95602 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.006092 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.582760 B = 4595.310440 C = 5125.707877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.580 5.580 13 C 0.090 3.910 14 C 0.553 3.447 15 O -0.543 6.543 16 C -0.229 4.229 17 C 0.279 3.721 18 N -0.858 5.858 19 C -0.217 4.217 20 C -0.035 4.035 21 C -0.222 4.222 22 C 0.174 3.826 23 F -0.131 7.131 24 H 0.013 0.987 25 H 0.031 0.969 26 H 0.094 0.906 27 H 0.263 0.737 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.409 0.591 32 H 0.402 0.598 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 -8.691 13.018 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.311 5.311 13 C -0.054 4.054 14 C 0.338 3.662 15 O -0.421 6.421 16 C -0.238 4.238 17 C 0.169 3.831 18 N -0.394 5.394 19 C -0.240 4.240 20 C -0.054 4.054 21 C -0.243 4.243 22 C 0.154 3.846 23 F -0.109 7.109 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.240 0.760 32 H 0.230 0.770 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.716 -7.928 12.717 16.039 hybrid contribution 0.233 -0.467 -1.191 1.300 sum 5.949 -8.395 11.525 15.450 Atomic orbital electron populations 1.22093 0.98075 0.99461 1.00976 1.19009 0.91103 0.94521 0.79772 0.91840 1.21320 1.31966 1.12922 0.90177 0.92237 1.24899 0.94956 0.94966 0.98965 1.69890 1.36270 1.22548 1.23688 0.86437 0.78610 0.79497 0.82789 1.19892 1.20915 1.20930 1.48266 1.47964 1.11707 1.23114 1.21512 1.01429 0.82911 0.99505 1.17841 0.79594 0.86293 0.82481 1.90771 1.58474 1.16390 1.76480 1.19520 0.98187 1.10107 0.96030 1.17350 0.88407 0.90117 0.87262 1.42485 1.24705 1.60365 1.11891 1.20530 1.02882 1.08049 0.92499 1.20698 0.92444 0.95104 0.97170 1.20725 0.99885 1.05740 0.97926 1.17371 0.81302 0.92647 0.93309 1.91526 1.43915 1.78589 1.96899 0.96803 0.95042 0.88737 0.92692 0.93360 0.93089 0.90769 0.76018 0.76955 0.85384 0.85120 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.95 37.16 0.33 -3.29 16 2 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.00 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.58 -12.81 2.75 -176.58 -0.49 -13.29 16 13 C 0.09 1.64 9.50 59.85 0.57 2.21 16 14 C 0.55 12.23 5.50 -12.58 -0.07 12.16 16 15 O -0.54 -14.22 16.43 5.26 0.09 -14.14 16 16 C -0.23 -4.07 3.93 -104.74 -0.41 -4.49 16 17 C 0.28 4.05 6.76 -83.62 -0.57 3.48 16 18 N -0.86 -11.43 8.99 32.54 0.29 -11.14 16 19 C -0.22 -2.44 9.87 -39.42 -0.39 -2.83 16 20 C -0.04 -0.37 10.02 -39.57 -0.40 -0.76 16 21 C -0.22 -2.76 10.00 -39.55 -0.40 -3.16 16 22 C 0.17 2.85 6.85 -38.97 -0.27 2.59 16 23 F -0.13 -2.38 16.83 2.25 0.04 -2.34 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 26 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.82 6.55 -51.92 -0.34 0.48 16 30 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 31 H 0.41 6.56 7.68 -40.82 -0.31 6.25 16 32 H 0.40 3.85 8.83 -40.82 -0.36 3.49 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -31.70 300.41 -6.11 -37.81 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.02 Total: 7.47 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.16 Total: -0.29 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.43 Total: -48.78 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.70 -6.11 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714041057.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.170 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds