Wall clock time and date at job start Mon Mar 30 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31515 * 119.99848 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99839 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46846 * 90.00354 * 8 6 4 10 10 H 1.48501 * 109.46926 * 210.00030 * 8 6 4 11 11 H 1.48499 * 109.47156 * 330.00112 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 C 1.34777 * 119.99828 * 119.72157 * 12 2 1 15 15 O 1.21613 * 119.99962 * 0.28066 * 14 12 2 16 16 C 1.47291 * 120.00061 * 180.27609 * 14 12 2 17 17 C 1.40431 * 120.22877 * 89.72841 * 16 14 12 18 18 N 1.38891 * 120.15793 * 359.97438 * 17 16 14 19 19 C 1.38843 * 119.67932 * 179.70416 * 17 16 14 20 20 C 1.38072 * 120.13113 * 0.57296 * 19 17 16 21 21 C 1.38435 * 120.46906 * 359.72172 * 20 19 17 22 22 C 1.38135 * 120.32073 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.07185 * 179.97438 * 22 21 20 24 24 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 26 26 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 27 27 H 0.97007 * 119.99404 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 29 29 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 30 30 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 31 31 H 0.97003 * 120.00334 * 0.02562 * 18 17 16 32 32 H 0.97005 * 120.00045 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.93178 * 180.29497 * 19 17 16 34 34 H 1.08002 * 119.76425 * 179.74348 * 20 19 17 35 35 H 1.08001 * 119.83872 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9773 1.9954 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.7885 -0.0341 -2.0861 15 8 3.0823 1.1302 -1.8937 16 6 3.2745 -0.7267 -3.2918 17 6 2.5113 -0.7138 -4.4705 18 7 1.2930 -0.0478 -4.5057 19 6 2.9832 -1.3652 -5.6022 20 6 4.1915 -2.0323 -5.5647 21 6 4.9457 -2.0539 -4.4040 22 6 4.4973 -1.4069 -3.2689 23 9 5.2372 -1.4317 -2.1388 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9034 -0.5278 4.4376 28 1 2.4182 -2.7377 -0.9758 29 1 0.6926 -2.3015 -0.9803 30 1 1.6190 -2.2841 -2.5002 31 1 0.9675 0.4102 -3.7150 32 1 0.7678 -0.0401 -5.3213 33 1 2.4018 -1.3538 -6.5123 34 1 4.5510 -2.5405 -6.4473 35 1 5.8896 -2.5785 -4.3862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714041062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:16 Heat of formation + Delta-G solvation = -42.858874 kcal Electronic energy + Delta-G solvation = -20707.620232 eV Core-core repulsion = 17427.483315 eV Total energy + Delta-G solvation = -3280.136917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.67546 -39.97857 -38.19870 -35.51175 -34.56839 -32.79208 -31.16243 -29.87795 -28.71868 -26.28219 -25.16521 -23.95152 -22.31234 -21.21272 -18.80701 -17.75777 -17.48691 -17.08173 -16.34174 -15.99433 -15.29056 -15.24280 -15.13256 -14.93925 -14.44505 -13.91051 -13.20031 -13.06937 -12.86567 -12.84968 -12.34245 -12.25634 -11.94906 -11.78662 -11.61315 -11.53457 -11.15283 -10.70706 -10.67121 -10.15978 -9.70355 -9.38811 -9.20374 -8.70698 -8.62811 -7.78003 -7.70438 -6.13664 -4.14387 1.10901 1.41655 3.06136 3.21789 3.36198 3.37869 3.54704 3.64761 3.82507 4.34707 4.42343 4.74475 4.94630 5.10346 5.18919 5.28778 5.49851 5.70080 5.89510 5.97423 6.00208 6.13276 6.19210 6.22291 6.30256 6.33325 6.45197 6.75409 6.78814 7.07325 7.25711 7.31359 7.56922 7.60667 8.12585 8.45389 8.78891 8.89970 9.46500 10.99176 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.006280 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.801915 B = 4457.251003 C = 4901.646827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.227 3.773 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.575 5.575 13 C 0.089 3.911 14 C 0.556 3.444 15 O -0.542 6.542 16 C -0.230 4.230 17 C 0.274 3.726 18 N -0.862 5.862 19 C -0.216 4.216 20 C -0.034 4.034 21 C -0.219 4.219 22 C 0.180 3.820 23 F -0.126 7.126 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.404 0.596 32 H 0.402 0.598 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -3.443 -18.980 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.126 3.874 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.305 5.305 13 C -0.055 4.055 14 C 0.342 3.658 15 O -0.421 6.421 16 C -0.239 4.239 17 C 0.166 3.834 18 N -0.398 5.398 19 C -0.239 4.239 20 C -0.053 4.053 21 C -0.240 4.240 22 C 0.159 3.841 23 F -0.104 7.104 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.231 0.769 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.519 -2.843 -18.579 18.857 hybrid contribution -0.765 0.772 0.547 1.217 sum -2.284 -2.071 -18.032 18.293 Atomic orbital electron populations 1.22469 0.98998 1.01151 0.99267 1.19346 0.89959 0.95238 0.82883 0.91927 1.21145 1.32687 1.14297 0.88358 0.90234 1.24867 0.95709 0.96537 0.95611 1.69879 1.45109 1.40174 0.97950 0.86925 0.80366 0.83900 0.77546 1.20403 1.22066 1.18855 1.47898 1.48586 1.11807 1.22195 1.21580 1.01714 0.82575 0.99633 1.17839 0.79149 0.86279 0.82547 1.90765 1.57659 1.16767 1.76867 1.19438 0.98038 1.10394 0.96024 1.17314 0.85273 0.89261 0.91600 1.42403 1.20394 1.59337 1.17715 1.20508 0.99616 1.06417 0.97390 1.20724 0.92653 0.95071 0.96833 1.20782 1.03398 1.07214 0.92578 1.17403 0.88439 0.95433 0.82777 1.91574 1.75319 1.94254 1.49223 0.92400 0.92987 0.94938 0.92430 0.92727 0.90694 0.92687 0.76633 0.76871 0.85345 0.85020 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 2 C 0.23 5.56 2.23 -69.08 -0.15 5.40 16 3 H 0.06 1.70 5.95 -51.93 -0.31 1.39 16 4 C -0.53 -14.87 8.95 -34.44 -0.31 -15.18 16 5 H 0.08 2.44 7.89 -52.48 -0.41 2.03 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 8 Si 0.88 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 12 N -0.57 -12.21 2.75 -176.58 -0.49 -12.70 16 13 C 0.09 1.56 9.50 59.85 0.57 2.13 16 14 C 0.56 11.83 5.50 -12.58 -0.07 11.76 16 15 O -0.54 -13.60 16.43 5.27 0.09 -13.51 16 16 C -0.23 -3.94 3.94 -104.75 -0.41 -4.35 16 17 C 0.27 3.64 6.32 -83.61 -0.53 3.11 16 18 N -0.86 -9.63 8.99 32.54 0.29 -9.34 16 19 C -0.22 -2.24 9.87 -39.42 -0.39 -2.63 16 20 C -0.03 -0.34 10.02 -39.57 -0.40 -0.73 16 21 C -0.22 -2.71 10.00 -39.55 -0.40 -3.11 16 22 C 0.18 2.98 7.29 -38.98 -0.28 2.70 16 23 F -0.13 -2.42 16.83 2.25 0.04 -2.39 16 24 H 0.06 1.13 6.66 -51.92 -0.35 0.79 16 25 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.26 6.43 -51.93 -0.33 0.92 16 30 H 0.05 0.81 6.53 -51.93 -0.34 0.47 16 31 H 0.40 5.25 7.68 -40.82 -0.31 4.93 16 32 H 0.40 3.03 8.84 -40.82 -0.36 2.67 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -34.08 293.57 -5.04 -39.12 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.88 Total: 4.96 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.14 Total: -1.90 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.58 Total: -48.51 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.08 -5.04 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714041062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.737 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds