Wall clock time and date at job start Mon Mar 30 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31515 * 119.99848 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99839 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46846 * 90.00354 * 8 6 4 10 10 H 1.48501 * 109.46926 * 210.00030 * 8 6 4 11 11 H 1.48499 * 109.47156 * 330.00112 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 C 1.34777 * 119.99828 * 119.72157 * 12 2 1 15 15 O 1.21613 * 119.99962 * 0.28066 * 14 12 2 16 16 C 1.47291 * 120.00061 * 180.27609 * 14 12 2 17 17 C 1.40431 * 120.22877 * 89.72841 * 16 14 12 18 18 N 1.38891 * 120.15793 * 359.97438 * 17 16 14 19 19 C 1.38843 * 119.67932 * 179.70416 * 17 16 14 20 20 C 1.38072 * 120.13113 * 0.57296 * 19 17 16 21 21 C 1.38435 * 120.46906 * 359.72172 * 20 19 17 22 22 C 1.38135 * 120.32073 * 359.97438 * 21 20 19 23 23 F 1.35102 * 120.07185 * 179.97438 * 22 21 20 24 24 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 26 26 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 27 27 H 0.97007 * 119.99404 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 29 29 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 30 30 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 31 31 H 0.97003 * 120.00334 * 0.02562 * 18 17 16 32 32 H 0.97005 * 120.00045 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.93178 * 180.29497 * 19 17 16 34 34 H 1.08002 * 119.76425 * 179.74348 * 20 19 17 35 35 H 1.08001 * 119.83872 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9773 1.9954 3.9071 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.7885 -0.0341 -2.0861 15 8 3.0823 1.1302 -1.8937 16 6 3.2745 -0.7267 -3.2918 17 6 2.5113 -0.7138 -4.4705 18 7 1.2930 -0.0478 -4.5057 19 6 2.9832 -1.3652 -5.6022 20 6 4.1915 -2.0323 -5.5647 21 6 4.9457 -2.0539 -4.4040 22 6 4.4973 -1.4069 -3.2689 23 9 5.2372 -1.4317 -2.1388 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9034 -0.5278 4.4376 28 1 2.4182 -2.7377 -0.9758 29 1 0.6926 -2.3015 -0.9803 30 1 1.6190 -2.2841 -2.5002 31 1 0.9675 0.4102 -3.7150 32 1 0.7678 -0.0401 -5.3213 33 1 2.4018 -1.3538 -6.5123 34 1 4.5510 -2.5405 -6.4473 35 1 5.8896 -2.5785 -4.3862 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714041062.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:14 Heat of formation + Delta-G solvation = -68.798657 kcal Electronic energy + Delta-G solvation = -20708.745066 eV Core-core repulsion = 17427.483315 eV Total energy + Delta-G solvation = -3281.261751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -49.99361 -41.35930 -39.48943 -37.31899 -35.50341 -34.81399 -32.79356 -31.26646 -29.68772 -27.83211 -27.20217 -25.27106 -23.33433 -22.77923 -20.39687 -19.09140 -18.83112 -18.42985 -18.10438 -17.66298 -16.79357 -16.49693 -16.30948 -16.16859 -15.75325 -15.56119 -14.94380 -14.71655 -14.17104 -14.14691 -13.94655 -13.80045 -13.62825 -13.17806 -13.07226 -12.82561 -12.62385 -12.56700 -12.08642 -11.62775 -11.58954 -11.42075 -10.91550 -10.83054 -9.80341 -9.53846 -8.64516 -8.38421 -6.44382 0.07504 0.45164 1.22750 1.33268 1.42088 1.46229 2.17487 2.24623 2.66718 2.74118 2.96092 3.36908 3.52861 3.99019 4.13459 4.27578 4.38603 4.44849 4.49504 4.54007 4.58902 4.64460 4.85874 4.93961 4.99649 5.10612 5.21270 5.29121 5.43115 5.45504 5.62051 5.82062 6.14133 6.30140 6.54044 6.60159 6.81542 7.09793 7.24926 8.78175 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.006280 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.801915 B = 4457.251003 C = 4901.646827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.229 3.771 3 H 0.031 0.969 4 C -0.532 4.532 5 H 0.037 0.963 6 C 0.021 3.979 7 N -0.940 5.940 8 Si 0.946 3.054 9 H -0.247 1.247 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.580 5.580 13 C 0.092 3.908 14 C 0.555 3.445 15 O -0.594 6.594 16 C -0.265 4.265 17 C 0.273 3.727 18 N -0.853 5.853 19 C -0.198 4.198 20 C -0.015 4.015 21 C -0.213 4.213 22 C 0.139 3.861 23 F -0.158 7.158 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.269 0.731 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.421 0.579 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -3.885 -22.765 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.126 3.874 3 H 0.049 0.951 4 C -0.570 4.570 5 H 0.055 0.945 6 C -0.178 4.178 7 N -0.579 5.579 8 Si 0.773 3.227 9 H -0.172 1.172 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.309 5.309 13 C -0.050 4.050 14 C 0.344 3.656 15 O -0.476 6.476 16 C -0.274 4.274 17 C 0.163 3.837 18 N -0.390 5.390 19 C -0.220 4.220 20 C -0.034 4.034 21 C -0.234 4.234 22 C 0.119 3.881 23 F -0.137 7.137 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.223 0.777 32 H 0.254 0.746 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.368 -3.326 -22.417 22.911 hybrid contribution -0.096 0.820 1.598 1.798 sum -3.464 -2.505 -20.819 21.254 Atomic orbital electron populations 1.22303 0.95687 1.02560 1.00429 1.19059 0.92419 0.93256 0.82688 0.95112 1.21342 1.32006 1.13140 0.90513 0.94507 1.25723 0.97227 0.99740 0.95086 1.70022 1.46974 1.42252 0.98650 0.85903 0.79935 0.79698 0.77209 1.17184 1.22234 1.18607 1.47945 1.48690 1.13017 1.21220 1.21685 1.01328 0.80216 1.01765 1.18531 0.77787 0.85761 0.83535 1.90709 1.59294 1.19231 1.78363 1.19233 0.99631 1.12961 0.95583 1.17529 0.85499 0.89602 0.91119 1.42404 1.19916 1.58449 1.18241 1.21034 0.99672 1.03928 0.97402 1.21311 0.91588 0.93440 0.97055 1.21110 1.04354 1.06071 0.91861 1.17943 0.88856 0.97974 0.83326 1.91486 1.76155 1.94798 1.51241 0.90909 0.93682 0.91750 0.92154 0.94648 0.89720 0.89301 0.77724 0.74621 0.81048 0.80199 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.20 8.65 71.98 0.62 -5.58 16 2 C 0.23 11.45 2.23 44.25 0.10 11.54 16 3 H 0.03 1.74 5.95 -2.39 -0.01 1.73 16 4 C -0.53 -31.42 8.95 25.60 0.23 -31.19 16 5 H 0.04 2.42 7.89 -2.91 -0.02 2.40 16 6 C 0.02 1.24 5.45 84.65 0.46 1.70 16 7 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.95 45.80 24.37 68.60 1.67 47.47 16 9 H -0.25 -10.72 6.87 99.48 0.68 -10.03 16 10 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.26 -12.47 6.53 99.48 0.65 -11.82 16 12 N -0.58 -25.28 2.75 -830.84 -2.29 -27.57 16 13 C 0.09 3.27 9.50 127.77 1.21 4.48 16 14 C 0.56 24.43 5.50 86.62 0.48 24.90 16 15 O -0.59 -31.30 16.43 -4.07 -0.07 -31.37 16 16 C -0.26 -9.03 3.94 -19.95 -0.08 -9.11 16 17 C 0.27 6.48 6.32 38.70 0.24 6.72 16 18 N -0.85 -16.67 8.99 -50.95 -0.46 -17.12 16 19 C -0.20 -3.05 9.87 22.38 0.22 -2.83 16 20 C -0.02 -0.22 10.02 22.28 0.22 0.00 16 21 C -0.21 -4.76 10.00 22.29 0.22 -4.54 16 22 C 0.14 4.64 7.29 22.66 0.17 4.81 16 23 F -0.16 -6.53 16.83 44.97 0.76 -5.78 16 24 H 0.07 2.72 6.66 -2.38 -0.02 2.70 16 25 H 0.04 1.90 3.27 -2.39 -0.01 1.89 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 2.78 6.43 -2.39 -0.02 2.76 16 30 H 0.09 2.51 6.53 -2.39 -0.02 2.49 16 31 H 0.40 9.60 7.68 -92.71 -0.71 8.89 16 32 H 0.42 4.67 8.84 -92.70 -0.82 3.85 16 33 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 35 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -81.25 293.57 3.55 -77.70 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.46 Total: 14.89 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.10 Total: 0.92 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -2.45 Total: -103.83 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.07 Total: -31.37 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.76 Total: -5.78 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -81.25 3.55 -77.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714041062.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.902 kcal (2) G-P(sol) polarization free energy of solvation -81.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds