Wall clock time and date at job start Mon Mar 30 2020 04:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47292 * 2 1 4 4 C 1.50702 * 109.46778 * 239.99738 * 2 1 3 5 5 H 1.07993 * 120.00325 * 240.00008 * 4 2 1 6 6 C 1.37881 * 119.99850 * 60.00694 * 4 2 1 7 7 N 1.31521 * 119.99929 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00193 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47200 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47365 * 119.99380 * 8 6 4 11 11 H 1.48501 * 109.47206 * 239.99576 * 8 6 4 12 12 N 1.46506 * 109.47109 * 120.00318 * 2 1 3 13 13 C 1.34774 * 119.99867 * 274.99566 * 12 2 1 14 14 O 1.21280 * 119.99846 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00213 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47614 * 180.02562 * 15 13 12 17 17 C 1.34960 * 125.63335 * 265.28689 * 16 15 13 18 18 C 1.35484 * 108.98377 * 180.15522 * 17 16 15 19 19 C 1.39805 * 107.84202 * 359.59925 * 18 17 16 20 20 C 1.37698 * 125.63385 * 84.99400 * 16 15 13 21 21 C 1.46486 * 126.26438 * 0.02863 * 20 16 15 22 22 O 1.21620 * 119.99894 * 179.97438 * 21 20 16 23 23 O 1.34893 * 119.99996 * 359.97438 * 21 20 16 24 24 H 1.09001 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47143 * 299.99700 * 1 2 3 26 26 H 1.08996 * 109.47335 * 59.99745 * 1 2 3 27 27 H 0.96993 * 119.99860 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99882 * 95.00274 * 12 2 1 29 29 H 1.09001 * 109.47153 * 59.99627 * 15 13 12 30 30 H 1.08999 * 109.46910 * 300.00526 * 15 13 12 31 31 H 1.08001 * 125.50677 * 0.03031 * 17 16 15 32 32 H 1.08002 * 126.08163 * 179.86907 * 18 17 16 33 33 H 1.08001 * 126.51612 * 180.22222 * 19 18 17 34 34 H 0.96698 * 116.99859 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2857 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7286 3.5874 16 7 2.6987 0.2125 4.7091 17 6 3.7822 0.9168 5.0980 18 6 3.4521 1.6776 6.1694 19 6 2.1038 1.4476 6.4589 20 6 1.6450 0.5288 5.5372 21 6 0.2860 -0.0116 5.4552 22 8 -0.5608 0.3488 6.2504 23 8 -0.0264 -0.9091 4.4978 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7082 1.1610 -3.4843 28 1 2.2491 -1.6318 1.1525 29 1 3.6493 -1.1205 3.3978 30 1 1.9778 -1.5509 3.8324 31 1 4.7557 0.8786 4.6319 32 1 4.1119 2.3464 6.7022 33 1 1.5304 1.9024 7.2531 34 1 -0.9357 -1.2375 4.4839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714304200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:29 Heat of formation + Delta-G solvation = -77.720782 kcal Electronic energy + Delta-G solvation = -20171.848491 eV Core-core repulsion = 16877.827058 eV Total energy + Delta-G solvation = -3294.021433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51811 -39.52386 -38.76641 -36.03953 -34.93194 -32.96877 -32.39780 -29.58401 -29.32095 -26.83136 -25.32127 -23.85326 -21.64950 -20.66808 -19.85800 -19.55198 -18.15018 -17.65568 -17.21029 -16.03788 -15.54660 -15.42446 -15.17768 -14.83355 -14.33393 -13.80286 -13.46992 -13.28114 -12.80174 -12.75744 -12.47410 -12.33641 -12.01304 -11.68455 -11.50903 -11.16394 -11.01904 -10.81875 -10.74169 -10.37969 -10.31386 -9.50066 -9.12926 -8.66573 -8.59130 -8.26792 -8.05468 -6.19524 -4.29677 1.28026 2.57398 2.79118 3.08628 3.14555 3.18766 3.26112 3.26970 3.28881 3.96057 4.30375 4.75744 4.84162 5.08312 5.12915 5.24037 5.30675 5.47579 5.57861 6.07351 6.16744 6.47409 6.73749 6.74489 6.88201 6.96230 7.06394 7.14062 7.32455 7.45413 7.60268 7.81884 7.94147 8.06595 8.49977 8.67587 8.94923 9.38001 10.86431 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032223 B = 0.004672 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.724027 B = 5991.659654 C = 6399.098425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.703 5.703 13 C 0.490 3.510 14 O -0.537 6.537 15 C 0.074 3.926 16 N -0.394 5.394 17 C 0.044 3.956 18 C -0.217 4.217 19 C -0.097 4.097 20 C -0.041 4.041 21 C 0.559 3.441 22 O -0.516 6.516 23 O -0.516 6.516 24 H 0.027 0.973 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.390 0.610 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 -5.312 13.504 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.351 5.351 13 C 0.273 3.727 14 O -0.415 6.415 15 C -0.051 4.051 16 N -0.067 5.067 17 C -0.093 4.093 18 C -0.240 4.240 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.405 3.595 22 O -0.406 6.406 23 O -0.328 6.328 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.187 0.813 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 4.077 -4.358 13.286 14.565 hybrid contribution -0.206 -1.094 -1.077 1.549 sum 3.870 -5.452 12.209 13.920 Atomic orbital electron populations 1.22062 0.98318 0.99135 1.00914 1.18777 0.91130 0.93922 0.79712 0.93411 1.21227 1.32630 1.13294 0.90224 0.91959 1.24902 0.94755 0.94929 0.99135 1.69914 1.35721 1.22416 1.23910 0.86375 0.78626 0.79486 0.82489 1.19720 1.20827 1.20844 1.46467 1.64924 1.13542 1.10192 1.20356 0.79767 0.87921 0.84681 1.90738 1.50478 1.15695 1.84548 1.22053 1.05382 0.92245 0.85449 1.43484 1.08777 1.32244 1.22197 1.21961 0.92297 0.96521 0.98521 1.20799 0.96215 1.05821 1.01184 1.21267 0.95175 0.97003 0.98906 1.19232 0.86476 1.08902 1.00402 1.19494 0.86904 0.75728 0.77365 1.90918 1.49099 1.58917 1.41639 1.84635 1.38307 1.56657 1.53205 0.95396 0.96710 0.89140 0.92532 0.77799 0.86433 0.85645 0.81252 0.83607 0.83336 0.72699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.27 6.54 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.30 -17.81 -0.09 1.64 16 7 N -0.88 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 N -0.70 -13.55 5.07 -54.93 -0.28 -13.83 16 13 C 0.49 9.12 7.77 -10.99 -0.09 9.04 16 14 O -0.54 -12.65 16.09 5.56 0.09 -12.56 16 15 C 0.07 0.97 5.88 -5.20 -0.03 0.93 16 16 N -0.39 -5.63 2.24 -114.33 -0.26 -5.89 16 17 C 0.04 0.55 11.34 -17.16 -0.19 0.36 16 18 C -0.22 -2.66 10.81 -39.98 -0.43 -3.09 16 19 C -0.10 -1.37 10.66 -39.09 -0.42 -1.79 16 20 C -0.04 -0.63 6.88 -82.00 -0.56 -1.20 16 21 C 0.56 8.80 8.29 34.05 0.28 9.08 16 22 O -0.52 -9.08 17.67 -19.36 -0.34 -9.42 16 23 O -0.52 -6.71 10.89 -41.02 -0.45 -7.15 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.39 6.23 8.54 -40.82 -0.35 5.88 16 29 H 0.12 1.11 8.12 -51.93 -0.42 0.68 16 30 H 0.13 1.43 6.46 -51.93 -0.34 1.09 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.41 3.55 9.11 45.56 0.42 3.97 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -34.29 304.00 -5.77 -40.06 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.05 Total: 8.83 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.67 Total: 4.16 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.09 Total: -43.56 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.70 Total: -29.14 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.29 -5.77 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714304200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.661 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds