Wall clock time and date at job start Mon Mar 30 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47292 * 2 1 4 4 C 1.50702 * 109.46778 * 239.99738 * 2 1 3 5 5 H 1.07993 * 120.00325 * 240.00008 * 4 2 1 6 6 C 1.37881 * 119.99850 * 60.00694 * 4 2 1 7 7 N 1.31521 * 119.99929 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00193 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47200 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47365 * 119.99380 * 8 6 4 11 11 H 1.48501 * 109.47206 * 239.99576 * 8 6 4 12 12 N 1.46506 * 109.47109 * 120.00318 * 2 1 3 13 13 C 1.34774 * 119.99867 * 274.99566 * 12 2 1 14 14 O 1.21280 * 119.99846 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00213 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47614 * 180.02562 * 15 13 12 17 17 C 1.34960 * 125.63335 * 265.28689 * 16 15 13 18 18 C 1.35484 * 108.98377 * 180.15522 * 17 16 15 19 19 C 1.39805 * 107.84202 * 359.59925 * 18 17 16 20 20 C 1.37698 * 125.63385 * 84.99400 * 16 15 13 21 21 C 1.46486 * 126.26438 * 0.02863 * 20 16 15 22 22 O 1.21620 * 119.99894 * 179.97438 * 21 20 16 23 23 O 1.34893 * 119.99996 * 359.97438 * 21 20 16 24 24 H 1.09001 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47143 * 299.99700 * 1 2 3 26 26 H 1.08996 * 109.47335 * 59.99745 * 1 2 3 27 27 H 0.96993 * 119.99860 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99882 * 95.00274 * 12 2 1 29 29 H 1.09001 * 109.47153 * 59.99627 * 15 13 12 30 30 H 1.08999 * 109.46910 * 300.00526 * 15 13 12 31 31 H 1.08001 * 125.50677 * 0.03031 * 17 16 15 32 32 H 1.08002 * 126.08163 * 179.86907 * 18 17 16 33 33 H 1.08001 * 126.51612 * 180.22222 * 19 18 17 34 34 H 0.96698 * 116.99859 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2857 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7286 3.5874 16 7 2.6987 0.2125 4.7091 17 6 3.7822 0.9168 5.0980 18 6 3.4521 1.6776 6.1694 19 6 2.1038 1.4476 6.4589 20 6 1.6450 0.5288 5.5372 21 6 0.2860 -0.0116 5.4552 22 8 -0.5608 0.3488 6.2504 23 8 -0.0264 -0.9091 4.4978 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7082 1.1610 -3.4843 28 1 2.2491 -1.6318 1.1525 29 1 3.6493 -1.1205 3.3978 30 1 1.9778 -1.5509 3.8324 31 1 4.7557 0.8786 4.6319 32 1 4.1119 2.3464 6.7022 33 1 1.5304 1.9024 7.2531 34 1 -0.9357 -1.2375 4.4839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714304200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:28 Heat of formation + Delta-G solvation = -102.674403 kcal Electronic energy + Delta-G solvation = -20172.930561 eV Core-core repulsion = 16877.827058 eV Total energy + Delta-G solvation = -3295.103503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.57176 -40.71368 -40.26103 -37.18266 -36.74659 -34.42883 -33.92544 -31.08822 -30.61992 -28.07878 -27.33238 -24.94152 -23.33638 -21.68732 -21.40132 -20.80033 -19.45549 -18.95328 -18.43527 -17.72925 -17.08907 -16.72677 -16.46227 -16.18284 -15.90908 -15.18737 -14.69030 -14.48636 -14.44526 -14.06964 -13.82363 -13.64597 -13.28923 -13.05498 -12.98262 -12.80080 -12.72275 -12.64610 -12.29163 -12.11688 -11.94733 -11.10920 -11.00850 -10.62059 -9.80126 -9.74764 -9.29248 -8.18258 -6.36040 0.16220 1.45106 1.45891 1.51210 1.58389 1.71049 1.81447 2.04873 2.18044 2.37057 2.65252 3.12988 3.76555 3.86678 3.96659 4.17154 4.30905 4.48951 4.62222 4.73149 4.89669 5.06777 5.08511 5.23936 5.40848 5.44632 5.58852 5.65758 5.75704 5.86209 5.93154 6.08098 6.20998 6.72580 6.88678 6.89782 7.31483 7.50412 8.88245 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032223 B = 0.004672 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.724027 B = 5991.659654 C = 6399.098425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H -0.005 1.005 4 C -0.543 4.543 5 H 0.079 0.921 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.256 1.256 10 H -0.281 1.281 11 H -0.286 1.286 12 N -0.696 5.696 13 C 0.489 3.511 14 O -0.592 6.592 15 C 0.086 3.914 16 N -0.402 5.402 17 C 0.046 3.954 18 C -0.219 4.219 19 C -0.107 4.107 20 C -0.079 4.079 21 C 0.558 3.442 22 O -0.548 6.548 23 O -0.512 6.512 24 H 0.043 0.957 25 H 0.006 0.994 26 H 0.063 0.937 27 H 0.264 0.736 28 H 0.409 0.591 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.204 0.796 32 H 0.174 0.826 33 H 0.153 0.847 34 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -7.277 13.683 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.170 3.830 3 H 0.013 0.987 4 C -0.581 4.581 5 H 0.097 0.903 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.798 3.202 9 H -0.179 1.179 10 H -0.207 1.207 11 H -0.212 1.212 12 N -0.346 5.346 13 C 0.274 3.726 14 O -0.473 6.473 15 C -0.038 4.038 16 N -0.076 5.076 17 C -0.090 4.090 18 C -0.242 4.242 19 C -0.133 4.133 20 C -0.188 4.188 21 C 0.405 3.595 22 O -0.440 6.440 23 O -0.326 6.326 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.183 0.817 30 H 0.164 0.836 31 H 0.221 0.779 32 H 0.192 0.808 33 H 0.171 0.829 34 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 6.036 -6.389 13.485 16.096 hybrid contribution -0.792 -0.426 -1.094 1.416 sum 5.244 -6.815 12.391 15.082 Atomic orbital electron populations 1.21874 0.98491 0.99503 0.99174 1.18313 0.90949 0.91828 0.81959 0.98669 1.21581 1.32445 1.13552 0.90512 0.90302 1.25826 0.94883 0.95540 1.02483 1.70073 1.37148 1.24123 1.24534 0.85279 0.78021 0.78565 0.78348 1.17934 1.20723 1.21217 1.46137 1.64892 1.14348 1.09228 1.21293 0.78227 0.87335 0.85712 1.90719 1.52594 1.18421 1.85526 1.22119 1.08179 0.91402 0.82114 1.43624 1.08856 1.32898 1.22207 1.22673 0.93067 0.95168 0.98129 1.21206 0.95687 1.05963 1.01315 1.21602 0.96326 0.96564 0.98823 1.19462 0.86975 1.10450 1.01901 1.19659 0.86985 0.75641 0.77166 1.90889 1.50004 1.60206 1.42924 1.84582 1.39891 1.55952 1.52210 0.93749 0.97452 0.91842 0.92642 0.75474 0.81722 0.83648 0.77889 0.80836 0.82922 0.70721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.54 2.56 44.24 0.11 13.66 16 3 H 0.00 -0.28 7.58 -2.39 -0.02 -0.29 16 4 C -0.54 -27.28 8.73 25.60 0.22 -27.06 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.03 11.32 21.45 0.24 -51.79 16 8 Si 0.97 40.54 29.54 68.60 2.03 42.57 16 9 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.70 -25.91 5.07 -446.10 -2.26 -28.17 16 13 C 0.49 17.56 7.77 87.66 0.68 18.25 16 14 O -0.59 -28.13 16.09 -3.03 -0.05 -28.18 16 15 C 0.09 1.98 5.88 85.63 0.50 2.49 16 16 N -0.40 -10.60 2.24 -515.62 -1.15 -11.75 16 17 C 0.05 1.02 11.34 83.58 0.95 1.97 16 18 C -0.22 -4.87 10.81 22.01 0.24 -4.63 16 19 C -0.11 -2.92 10.66 22.59 0.24 -2.68 16 20 C -0.08 -2.41 6.88 40.31 0.28 -2.13 16 21 C 0.56 17.51 8.29 69.97 0.58 18.09 16 22 O -0.55 -19.63 17.67 19.44 0.34 -19.29 16 23 O -0.51 -12.87 10.89 -58.07 -0.63 -13.50 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 27 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.41 11.95 8.54 -92.71 -0.79 11.15 16 29 H 0.17 2.26 8.12 -2.39 -0.02 2.24 16 30 H 0.15 2.81 6.46 -2.39 -0.02 2.79 16 31 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.43 7.05 9.11 -74.06 -0.67 6.38 16 Total: -1.00 -76.95 304.00 3.12 -73.83 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.32 Total: 23.10 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 4.92 Total: 13.19 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -3.17 Total: -91.72 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -0.34 Total: -60.97 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -76.95 3.12 -73.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714304200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.844 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds