Wall clock time and date at job start Mon Mar 30 2020 04:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47172 * 2 1 4 4 C 1.50702 * 109.46994 * 120.00185 * 2 1 3 5 5 H 1.07997 * 120.00063 * 120.00437 * 4 2 1 6 6 C 1.37878 * 119.99773 * 299.99794 * 4 2 1 7 7 N 1.31516 * 120.00359 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47217 * 59.99923 * 8 6 4 10 10 H 1.48505 * 109.47200 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47014 * 299.99897 * 8 6 4 12 12 N 1.46506 * 109.47285 * 239.99806 * 2 1 3 13 13 C 1.34774 * 119.99867 * 84.99944 * 12 2 1 14 14 O 1.21280 * 119.99846 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00213 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47614 * 180.02562 * 15 13 12 17 17 C 1.34960 * 125.63335 * 265.28689 * 16 15 13 18 18 C 1.35484 * 108.98377 * 180.15522 * 17 16 15 19 19 C 1.39805 * 107.84202 * 359.59925 * 18 17 16 20 20 C 1.37698 * 125.63385 * 84.99400 * 16 15 13 21 21 C 1.46486 * 126.26438 * 0.02863 * 20 16 15 22 22 O 1.21620 * 119.99894 * 179.97438 * 21 20 16 23 23 O 1.34893 * 119.99996 * 359.97438 * 21 20 16 24 24 H 1.08998 * 109.47397 * 60.00113 * 1 2 3 25 25 H 1.09002 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47436 * 299.99801 * 1 2 3 27 27 H 0.96995 * 120.00358 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99882 * 265.00651 * 12 2 1 29 29 H 1.09001 * 109.47153 * 59.99627 * 15 13 12 30 30 H 1.08999 * 109.46910 * 300.00526 * 15 13 12 31 31 H 1.08001 * 125.50677 * 0.03031 * 17 16 15 32 32 H 1.08002 * 126.08163 * 179.86907 * 18 17 16 33 33 H 1.08001 * 126.51612 * 180.22222 * 19 18 17 34 34 H 0.96698 * 116.99859 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8267 -0.4199 5.2205 11 1 1.8278 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7288 -3.5877 16 7 2.6988 0.2126 -4.7090 17 6 1.7295 0.3891 -5.6313 18 6 2.1278 1.3372 -6.5134 19 6 3.3952 1.7798 -6.1234 20 6 3.7402 1.0677 -4.9929 21 6 4.9865 1.1971 -4.2340 22 8 5.8345 1.9934 -4.5888 23 8 5.1935 0.4332 -3.1417 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7089 1.1614 3.4844 28 1 2.2489 -1.6318 -1.1526 29 1 1.9760 -1.5507 -3.8325 30 1 3.6479 -1.1214 -3.3985 31 1 0.7892 -0.1412 -5.6624 32 1 1.5643 1.6915 -7.3640 33 1 3.9912 2.5353 -6.6138 34 1 6.0311 0.5539 -2.6738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714304219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:31 Heat of formation + Delta-G solvation = -77.599254 kcal Electronic energy + Delta-G solvation = -20154.574662 eV Core-core repulsion = 16860.558499 eV Total energy + Delta-G solvation = -3294.016163 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51281 -39.50083 -38.76503 -36.01182 -34.93158 -32.96677 -32.39411 -29.57645 -29.32467 -26.83235 -25.32055 -23.83678 -21.65145 -20.65384 -19.86911 -19.53416 -18.13831 -17.63639 -17.20317 -16.02819 -15.50696 -15.41959 -15.22213 -14.79806 -14.34003 -13.79667 -13.42666 -13.30332 -12.84158 -12.71491 -12.47730 -12.33017 -12.01807 -11.66491 -11.48708 -11.16808 -11.01189 -10.82476 -10.71772 -10.40926 -10.30538 -9.49838 -9.14685 -8.65531 -8.59068 -8.26480 -8.05478 -6.18699 -4.28926 1.29201 2.57858 2.79337 3.10827 3.14476 3.20944 3.26604 3.27204 3.28384 3.96260 4.30858 4.75531 4.84047 5.08486 5.13588 5.24218 5.30943 5.47919 5.58911 6.07653 6.17141 6.50448 6.72595 6.74760 6.85661 6.96343 7.05280 7.14093 7.32165 7.44980 7.60295 7.81884 7.96733 8.06537 8.50053 8.67823 8.94960 9.38554 10.87211 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.004888 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.519669 B = 5726.574292 C = 6264.836547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.490 3.510 14 O -0.537 6.537 15 C 0.074 3.926 16 N -0.394 5.394 17 C 0.043 3.957 18 C -0.216 4.216 19 C -0.098 4.098 20 C -0.040 4.040 21 C 0.559 3.441 22 O -0.516 6.516 23 O -0.515 6.515 24 H 0.014 0.986 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.266 0.734 28 H 0.390 0.610 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.170 0.830 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -5.591 -13.764 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.351 5.351 13 C 0.273 3.727 14 O -0.415 6.415 15 C -0.051 4.051 16 N -0.067 5.067 17 C -0.094 4.094 18 C -0.240 4.240 19 C -0.124 4.124 20 C -0.149 4.149 21 C 0.405 3.595 22 O -0.406 6.406 23 O -0.328 6.328 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.222 0.778 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.187 0.813 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 2.744 -4.681 -13.592 14.635 hybrid contribution 0.839 -0.847 1.337 1.792 sum 3.583 -5.529 -12.255 13.913 Atomic orbital electron populations 1.22082 0.98379 0.99138 1.00972 1.18764 0.91018 0.93979 0.79721 0.93391 1.21147 1.32734 1.13331 0.90227 0.92053 1.24893 0.94753 0.94920 0.99100 1.69887 1.35665 1.22327 1.24124 0.86488 0.79173 0.79554 0.81754 1.20152 1.21091 1.20133 1.46465 1.64905 1.13568 1.10183 1.20356 0.79533 0.87991 0.84844 1.90738 1.50495 1.15564 1.84656 1.22053 1.06058 0.91537 0.85484 1.43483 1.13757 1.29055 1.20409 1.21945 0.94147 1.01994 0.91322 1.20795 0.97503 1.02347 1.03366 1.21266 0.96786 0.99648 0.94684 1.19243 0.90324 1.03541 1.01798 1.19495 0.85138 0.77211 0.77697 1.90917 1.44737 1.36190 1.68726 1.84633 1.45852 1.61789 1.40485 0.96724 0.95392 0.89059 0.92420 0.77806 0.86497 0.85591 0.81303 0.83622 0.83331 0.72597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.15 0.34 -3.21 16 2 C 0.27 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 12 N -0.70 -13.55 5.07 -54.94 -0.28 -13.83 16 13 C 0.49 9.13 7.77 -10.99 -0.09 9.04 16 14 O -0.54 -12.66 16.09 5.56 0.09 -12.57 16 15 C 0.07 0.97 5.88 -5.20 -0.03 0.94 16 16 N -0.39 -5.64 2.24 -114.33 -0.26 -5.89 16 17 C 0.04 0.53 11.34 -17.16 -0.19 0.34 16 18 C -0.22 -2.65 10.81 -39.98 -0.43 -3.08 16 19 C -0.10 -1.38 10.66 -39.09 -0.42 -1.80 16 20 C -0.04 -0.62 6.88 -82.00 -0.56 -1.19 16 21 C 0.56 8.95 8.29 34.05 0.28 9.23 16 22 O -0.52 -9.22 17.67 -19.36 -0.34 -9.56 16 23 O -0.52 -6.93 10.89 -41.02 -0.45 -7.38 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 6.22 8.54 -40.82 -0.35 5.87 16 29 H 0.12 1.08 8.12 -51.93 -0.42 0.66 16 30 H 0.13 1.45 6.46 -51.93 -0.34 1.12 16 31 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.41 3.78 9.11 45.56 0.42 4.20 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -34.28 304.00 -5.77 -40.05 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.05 Total: 9.05 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.67 Total: 4.29 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.09 Total: -43.59 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.70 Total: -29.51 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.28 -5.77 -40.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714304219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.548 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds