Wall clock time and date at job start Mon Mar 30 2020 04:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47172 * 2 1 4 4 C 1.50702 * 109.46994 * 120.00185 * 2 1 3 5 5 H 1.07997 * 120.00063 * 120.00437 * 4 2 1 6 6 C 1.37878 * 119.99773 * 299.99794 * 4 2 1 7 7 N 1.31516 * 120.00359 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99986 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47217 * 59.99923 * 8 6 4 10 10 H 1.48505 * 109.47200 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47014 * 299.99897 * 8 6 4 12 12 N 1.46506 * 109.47285 * 239.99806 * 2 1 3 13 13 C 1.34774 * 119.99867 * 84.99944 * 12 2 1 14 14 O 1.21280 * 119.99846 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00213 * 180.02562 * 13 12 2 16 16 N 1.46500 * 109.47614 * 180.02562 * 15 13 12 17 17 C 1.34960 * 125.63335 * 265.28689 * 16 15 13 18 18 C 1.35484 * 108.98377 * 180.15522 * 17 16 15 19 19 C 1.39805 * 107.84202 * 359.59925 * 18 17 16 20 20 C 1.37698 * 125.63385 * 84.99400 * 16 15 13 21 21 C 1.46486 * 126.26438 * 0.02863 * 20 16 15 22 22 O 1.21620 * 119.99894 * 179.97438 * 21 20 16 23 23 O 1.34893 * 119.99996 * 359.97438 * 21 20 16 24 24 H 1.08998 * 109.47397 * 60.00113 * 1 2 3 25 25 H 1.09002 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47436 * 299.99801 * 1 2 3 27 27 H 0.96995 * 120.00358 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99882 * 265.00651 * 12 2 1 29 29 H 1.09001 * 109.47153 * 59.99627 * 15 13 12 30 30 H 1.08999 * 109.46910 * 300.00526 * 15 13 12 31 31 H 1.08001 * 125.50677 * 0.03031 * 17 16 15 32 32 H 1.08002 * 126.08163 * 179.86907 * 18 17 16 33 33 H 1.08001 * 126.51612 * 180.22222 * 19 18 17 34 34 H 0.96698 * 116.99859 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8073 -1.1190 4.0078 10 1 1.8267 -0.4199 5.2205 11 1 1.8278 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7288 -3.5877 16 7 2.6988 0.2126 -4.7090 17 6 1.7295 0.3891 -5.6313 18 6 2.1278 1.3372 -6.5134 19 6 3.3952 1.7798 -6.1234 20 6 3.7402 1.0677 -4.9929 21 6 4.9865 1.1971 -4.2340 22 8 5.8345 1.9934 -4.5888 23 8 5.1935 0.4332 -3.1417 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7089 1.1614 3.4844 28 1 2.2489 -1.6318 -1.1526 29 1 1.9760 -1.5507 -3.8325 30 1 3.6479 -1.1214 -3.3985 31 1 0.7892 -0.1412 -5.6624 32 1 1.5643 1.6915 -7.3640 33 1 3.9912 2.5353 -6.6138 34 1 6.0311 0.5539 -2.6738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714304219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:31 Heat of formation + Delta-G solvation = -102.596988 kcal Electronic energy + Delta-G solvation = -20155.658645 eV Core-core repulsion = 16860.558499 eV Total energy + Delta-G solvation = -3295.100146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57113 -40.71540 -40.25919 -37.18673 -36.74323 -34.42813 -33.92443 -31.08360 -30.61915 -28.07582 -27.32522 -24.94197 -23.33243 -21.66795 -21.41653 -20.79810 -19.45288 -18.95321 -18.43458 -17.72769 -17.07797 -16.72866 -16.48379 -16.19032 -15.90288 -15.16781 -14.67750 -14.53311 -14.42425 -14.07061 -13.78191 -13.65971 -13.28813 -13.05391 -12.97389 -12.79878 -12.71538 -12.63932 -12.26923 -12.16857 -11.94948 -11.13059 -11.00564 -10.60075 -9.80644 -9.73999 -9.29097 -8.17948 -6.35780 0.16165 1.45154 1.47200 1.51095 1.55494 1.71125 1.81634 2.04787 2.18105 2.37188 2.65226 3.12990 3.76386 3.87031 3.96506 4.17375 4.30934 4.48933 4.62323 4.74372 4.90419 5.07018 5.08462 5.24204 5.41608 5.44448 5.58513 5.66632 5.75885 5.86544 5.93418 6.08877 6.21590 6.72173 6.88229 6.89857 7.31512 7.50555 8.88016 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.004888 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.519669 B = 5726.574292 C = 6264.836547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H -0.008 1.008 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.696 5.696 13 C 0.489 3.511 14 O -0.592 6.592 15 C 0.086 3.914 16 N -0.402 5.402 17 C 0.048 3.952 18 C -0.219 4.219 19 C -0.106 4.106 20 C -0.080 4.080 21 C 0.557 3.443 22 O -0.548 6.548 23 O -0.513 6.513 24 H 0.011 0.989 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.167 0.833 30 H 0.144 0.856 31 H 0.206 0.794 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 -8.083 -14.527 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.010 0.990 4 C -0.583 4.583 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.186 1.186 12 N -0.346 5.346 13 C 0.274 3.726 14 O -0.473 6.473 15 C -0.038 4.038 16 N -0.076 5.076 17 C -0.089 4.089 18 C -0.242 4.242 19 C -0.133 4.133 20 C -0.189 4.189 21 C 0.404 3.596 22 O -0.441 6.441 23 O -0.327 6.327 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.245 0.755 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.223 0.777 32 H 0.192 0.808 33 H 0.170 0.830 34 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 2.539 -7.235 -14.370 16.287 hybrid contribution 0.877 -0.031 1.517 1.752 sum 3.416 -7.265 -12.853 15.155 Atomic orbital electron populations 1.21888 0.98192 0.99665 0.99460 1.18301 0.91121 0.91678 0.81917 0.98972 1.21520 1.32576 1.13613 0.90603 0.90447 1.25808 0.94879 0.95535 1.02417 1.70053 1.37088 1.23999 1.24641 0.85400 0.78619 0.78783 0.77549 1.19607 1.21547 1.18621 1.46137 1.64883 1.14375 1.09207 1.21293 0.77964 0.87403 0.85912 1.90719 1.52644 1.18242 1.85655 1.22120 1.07902 0.91408 0.82391 1.43624 1.13837 1.29240 1.20874 1.22683 0.94587 1.01459 0.90180 1.21209 0.96757 1.02002 1.04216 1.21602 0.97819 0.99411 0.94450 1.19454 0.91066 1.05385 1.02951 1.19698 0.85150 0.76844 0.77867 1.90886 1.45843 1.37630 1.69708 1.84585 1.47090 1.61138 1.39891 0.96969 0.93606 0.91820 0.92630 0.75485 0.81516 0.83852 0.77734 0.80788 0.82970 0.70738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 9.26 71.98 0.67 -5.82 16 2 C 0.27 13.57 2.56 44.24 0.11 13.68 16 3 H -0.01 -0.46 7.58 -2.39 -0.02 -0.48 16 4 C -0.55 -27.56 8.73 25.60 0.22 -27.34 16 5 H 0.08 3.58 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.08 11.32 21.45 0.24 -51.83 16 8 Si 0.97 40.76 29.54 68.60 2.03 42.79 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 N -0.70 -25.93 5.07 -446.11 -2.26 -28.19 16 13 C 0.49 17.57 7.77 87.66 0.68 18.25 16 14 O -0.59 -28.13 16.09 -3.03 -0.05 -28.18 16 15 C 0.09 1.98 5.88 85.63 0.50 2.48 16 16 N -0.40 -10.59 2.24 -515.62 -1.15 -11.74 16 17 C 0.05 1.03 11.34 83.58 0.95 1.98 16 18 C -0.22 -4.83 10.81 22.01 0.24 -4.59 16 19 C -0.11 -2.93 10.66 22.59 0.24 -2.68 16 20 C -0.08 -2.46 6.88 40.31 0.28 -2.18 16 21 C 0.56 17.91 8.29 69.97 0.58 18.50 16 22 O -0.55 -20.07 17.67 19.44 0.34 -19.73 16 23 O -0.51 -13.52 10.89 -58.07 -0.63 -14.16 16 24 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.41 11.95 8.54 -92.71 -0.79 11.16 16 29 H 0.17 2.19 8.12 -2.39 -0.02 2.17 16 30 H 0.14 2.84 6.46 -2.39 -0.02 2.83 16 31 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.43 7.70 9.11 -74.06 -0.67 7.02 16 Total: -1.00 -77.22 304.00 3.12 -74.09 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.32 Total: 23.51 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 4.92 Total: 13.44 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -3.17 Total: -91.77 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -0.34 Total: -62.06 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -77.22 3.12 -74.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714304219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.503 kcal (2) G-P(sol) polarization free energy of solvation -77.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds