Wall clock time and date at job start Mon Mar 30 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.89853 * 2 1 4 4 N 1.40082 * 108.20971 * 179.97438 * 3 2 1 5 5 H 0.96996 * 126.04424 * 180.02562 * 4 3 2 6 6 C 1.34954 * 107.92339 * 359.76006 * 4 3 2 7 7 C 1.50697 * 126.12915 * 180.24079 * 6 4 3 8 8 C 1.35318 * 107.74429 * 0.38960 * 6 4 3 9 9 C 1.50696 * 126.03829 * 179.87424 * 8 6 4 10 10 N 1.46506 * 109.47148 * 269.71264 * 9 8 6 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 8 12 12 O 1.21442 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.48836 * 119.99905 * 180.02562 * 11 10 9 14 14 O 1.21501 * 119.99747 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99906 * 180.02562 * 13 11 10 16 16 C 1.36125 * 120.00012 * 179.97438 * 15 13 11 17 17 H 1.07998 * 119.99570 * 359.97438 * 16 15 13 18 18 C 1.39585 * 120.00038 * 179.97438 * 16 15 13 19 19 N 1.31012 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47350 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46893 * 120.00307 * 20 18 16 23 23 H 1.48501 * 109.46947 * 240.00569 * 20 18 16 24 24 H 1.09000 * 109.47029 * 270.01488 * 1 2 3 25 25 H 1.08989 * 109.47340 * 30.02254 * 1 2 3 26 26 H 1.09001 * 109.46616 * 150.02080 * 1 2 3 27 27 H 1.08998 * 109.47226 * 270.18250 * 7 6 4 28 28 H 1.09001 * 109.46848 * 30.17412 * 7 6 4 29 29 H 1.09000 * 109.47197 * 150.17395 * 7 6 4 30 30 H 1.09001 * 109.47545 * 149.71736 * 9 8 6 31 31 H 1.08998 * 109.47669 * 29.71679 * 9 8 6 32 32 H 0.97005 * 119.99811 * 0.02562 * 10 9 8 33 33 H 0.97004 * 120.00018 * 359.97438 * 15 13 11 34 34 H 0.96995 * 120.00104 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2080 0.0011 6 6 3.6143 -0.7153 0.0063 7 6 4.8351 -1.5988 0.0141 8 6 2.3272 -1.1330 0.0005 9 6 1.8601 -2.5657 0.0011 10 7 1.7093 -3.0308 -1.3799 11 6 1.3040 -4.2925 -1.6256 12 8 1.0634 -5.0437 -0.7023 13 6 1.1514 -4.7652 -3.0287 14 8 1.3926 -4.0137 -3.9525 15 7 0.7457 -6.0266 -3.2744 16 6 0.6056 -6.4588 -4.5576 17 1 0.8192 -5.7906 -5.3787 18 6 0.1858 -7.7655 -4.8121 19 7 -0.0738 -8.5759 -3.8159 20 14 -0.0071 -8.3582 -6.5730 21 1 0.3450 -7.2586 -7.5069 22 1 0.8950 -9.5143 -6.8077 23 1 -1.4141 -8.7731 -6.8043 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3632 -0.8902 -0.5135 27 1 5.1347 -1.8135 -1.0117 28 1 5.6485 -1.0899 0.5312 29 1 4.6050 -2.5319 0.5284 30 1 0.9010 -2.6351 0.5145 31 1 2.5932 -3.1868 0.5157 32 1 1.9054 -2.4320 -2.1175 33 1 0.5534 -6.6267 -2.5368 34 1 -0.3658 -9.4838 -3.9928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718290890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:15 Heat of formation + Delta-G solvation = -11.072721 kcal Electronic energy + Delta-G solvation = -19510.515115 eV Core-core repulsion = 16251.676510 eV Total energy + Delta-G solvation = -3258.838605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54196 -39.34066 -37.17381 -34.90589 -34.05409 -33.53802 -31.70835 -31.28498 -28.59034 -27.57636 -26.14977 -25.04068 -22.36891 -20.33707 -19.72659 -19.26382 -18.29527 -17.55144 -16.74662 -15.92912 -15.27300 -15.00654 -14.77948 -14.22898 -14.08909 -13.88394 -13.62269 -13.44751 -13.05873 -12.80310 -12.68092 -12.52019 -12.27221 -12.08356 -11.82467 -11.75127 -11.19832 -10.65133 -10.49866 -10.39525 -10.33490 -9.70808 -9.38761 -8.75691 -8.66281 -8.19667 -8.16560 -6.64574 -3.96884 1.65823 2.43729 2.49684 2.66965 3.15633 3.18302 3.25325 3.69096 4.11536 4.31984 4.44344 4.51737 4.83603 5.07219 5.12876 5.21915 5.23438 5.27157 5.44167 5.56512 5.63487 5.83109 5.87530 5.91252 6.09373 6.11851 6.51352 6.84353 7.10163 7.33626 7.53584 7.74495 7.95016 8.36681 8.67445 8.99518 9.35350 9.88484 10.50470 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.003794 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.211213 B = 7378.354066 C = 7433.583332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.099 3.901 3 N -0.299 5.299 4 N -0.477 5.477 5 H 0.437 0.563 6 C 0.112 3.888 7 C -0.099 4.099 8 C -0.256 4.256 9 C 0.201 3.799 10 N -0.710 5.710 11 C 0.512 3.488 12 O -0.548 6.548 13 C 0.395 3.605 14 O -0.598 6.598 15 N -0.501 5.501 16 C -0.305 4.305 17 H 0.112 0.888 18 C 0.031 3.969 19 N -0.870 5.870 20 Si 0.937 3.063 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.277 1.277 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.405 0.595 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 12.862 8.527 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 N -0.122 5.122 4 N -0.184 5.184 5 H 0.281 0.719 6 C -0.018 4.018 7 C -0.157 4.157 8 C -0.267 4.267 9 C 0.077 3.923 10 N -0.364 5.364 11 C 0.297 3.703 12 O -0.425 6.425 13 C 0.180 3.820 14 O -0.486 6.486 15 N -0.135 5.135 16 C -0.436 4.436 17 H 0.130 0.870 18 C -0.176 4.176 19 N -0.508 5.508 20 Si 0.763 3.237 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.245 0.755 33 H 0.240 0.760 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.225 13.872 8.627 17.482 hybrid contribution 0.373 -0.891 -0.642 1.160 sum 6.598 12.981 7.986 16.608 Atomic orbital electron populations 1.20262 0.86448 1.03907 1.03158 1.22286 0.97100 0.89945 0.97488 1.77308 0.86353 1.22202 1.26304 1.46174 1.07435 1.04764 1.60068 0.71865 1.20984 0.97027 0.84943 0.98821 1.20563 0.92515 0.98501 1.04120 1.19730 0.91446 0.96012 1.19554 1.19377 1.01086 0.88187 0.83691 1.45836 1.68658 1.13462 1.08413 1.20677 0.76893 0.81852 0.90921 1.90688 1.50252 1.54905 1.46700 1.19011 0.90293 0.84803 0.87932 1.90583 1.58081 1.55117 1.44834 1.41569 1.52361 1.10014 1.09573 1.19921 1.42553 0.96772 0.84365 0.86988 1.25569 0.95962 0.95666 1.00394 1.69489 1.41676 1.07505 1.32109 0.85684 0.78140 0.78898 0.80989 1.18750 1.20331 1.20304 0.90285 0.90718 0.89833 0.89481 0.90994 0.89090 0.90810 0.91132 0.75522 0.75999 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.12 36.01 0.36 -0.47 16 2 C 0.10 1.27 7.22 -82.40 -0.59 0.67 16 3 N -0.30 -3.88 12.70 33.67 0.43 -3.45 16 4 N -0.48 -4.91 7.36 33.48 0.25 -4.66 16 5 H 0.44 3.02 8.96 -182.62 -1.64 1.38 16 6 C 0.11 1.20 7.21 -82.26 -0.59 0.61 16 7 C -0.10 -0.78 10.22 36.00 0.37 -0.41 16 8 C -0.26 -3.22 5.47 -105.05 -0.57 -3.79 16 9 C 0.20 2.80 5.61 -5.19 -0.03 2.77 16 10 N -0.71 -12.11 5.54 -62.11 -0.34 -12.45 16 11 C 0.51 10.98 7.87 -11.88 -0.09 10.88 16 12 O -0.55 -12.61 16.47 5.42 0.09 -12.52 16 13 C 0.40 9.92 7.82 -11.88 -0.09 9.83 16 14 O -0.60 -16.04 16.03 5.37 0.09 -15.96 16 15 N -0.50 -13.36 5.25 -11.59 -0.06 -13.42 16 16 C -0.31 -8.41 9.67 -15.14 -0.15 -8.56 16 17 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 18 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 19 N -0.87 -23.25 13.03 55.53 0.72 -22.53 16 20 Si 0.94 20.05 29.56 -169.99 -5.02 15.02 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.73 8.14 -51.94 -0.42 0.31 16 26 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.74 7.14 -51.93 -0.37 0.37 16 30 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 31 H 0.07 0.95 7.14 -51.93 -0.37 0.58 16 32 H 0.41 6.96 7.92 -40.82 -0.32 6.63 16 33 H 0.40 10.86 7.35 -40.82 -0.30 10.56 16 34 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -32.56 306.32 -5.75 -38.31 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -1.49 Total: 12.24 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.99 Total: -56.51 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: 0.18 Total: -28.47 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.56 -5.75 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718290890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.240 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds