Wall clock time and date at job start Mon Mar 30 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.89853 * 2 1 4 4 N 1.40082 * 108.20971 * 179.97438 * 3 2 1 5 5 H 0.96996 * 126.04424 * 180.02562 * 4 3 2 6 6 C 1.34954 * 107.92339 * 359.76006 * 4 3 2 7 7 C 1.50697 * 126.12915 * 180.24079 * 6 4 3 8 8 C 1.35318 * 107.74429 * 0.38960 * 6 4 3 9 9 C 1.50696 * 126.03829 * 179.87424 * 8 6 4 10 10 N 1.46506 * 109.47148 * 269.71264 * 9 8 6 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 8 12 12 O 1.21442 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.48836 * 119.99905 * 180.02562 * 11 10 9 14 14 O 1.21501 * 119.99747 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99906 * 180.02562 * 13 11 10 16 16 C 1.36125 * 120.00012 * 179.97438 * 15 13 11 17 17 H 1.07998 * 119.99570 * 359.97438 * 16 15 13 18 18 C 1.39585 * 120.00038 * 179.97438 * 16 15 13 19 19 N 1.31012 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47350 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46893 * 120.00307 * 20 18 16 23 23 H 1.48501 * 109.46947 * 240.00569 * 20 18 16 24 24 H 1.09000 * 109.47029 * 270.01488 * 1 2 3 25 25 H 1.08989 * 109.47340 * 30.02254 * 1 2 3 26 26 H 1.09001 * 109.46616 * 150.02080 * 1 2 3 27 27 H 1.08998 * 109.47226 * 270.18250 * 7 6 4 28 28 H 1.09001 * 109.46848 * 30.17412 * 7 6 4 29 29 H 1.09000 * 109.47197 * 150.17395 * 7 6 4 30 30 H 1.09001 * 109.47545 * 149.71736 * 9 8 6 31 31 H 1.08998 * 109.47669 * 29.71679 * 9 8 6 32 32 H 0.97005 * 119.99811 * 0.02562 * 10 9 8 33 33 H 0.97004 * 120.00018 * 359.97438 * 15 13 11 34 34 H 0.96995 * 120.00104 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 1 4.3908 1.2080 0.0011 6 6 3.6143 -0.7153 0.0063 7 6 4.8351 -1.5988 0.0141 8 6 2.3272 -1.1330 0.0005 9 6 1.8601 -2.5657 0.0011 10 7 1.7093 -3.0308 -1.3799 11 6 1.3040 -4.2925 -1.6256 12 8 1.0634 -5.0437 -0.7023 13 6 1.1514 -4.7652 -3.0287 14 8 1.3926 -4.0137 -3.9525 15 7 0.7457 -6.0266 -3.2744 16 6 0.6056 -6.4588 -4.5576 17 1 0.8192 -5.7906 -5.3787 18 6 0.1858 -7.7655 -4.8121 19 7 -0.0738 -8.5759 -3.8159 20 14 -0.0071 -8.3582 -6.5730 21 1 0.3450 -7.2586 -7.5069 22 1 0.8950 -9.5143 -6.8077 23 1 -1.4141 -8.7731 -6.8043 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3632 -0.8902 -0.5135 27 1 5.1347 -1.8135 -1.0117 28 1 5.6485 -1.0899 0.5312 29 1 4.6050 -2.5319 0.5284 30 1 0.9010 -2.6351 0.5145 31 1 2.5932 -3.1868 0.5157 32 1 1.9054 -2.4320 -2.1175 33 1 0.5534 -6.6267 -2.5368 34 1 -0.3658 -9.4838 -3.9928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718290890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:14 Heat of formation + Delta-G solvation = -36.855136 kcal Electronic energy + Delta-G solvation = -19511.633124 eV Core-core repulsion = 16251.676510 eV Total energy + Delta-G solvation = -3259.956614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.45854 -41.13380 -39.07073 -36.56707 -35.82391 -34.39162 -33.44782 -32.65547 -29.55998 -28.51286 -27.81928 -26.43536 -24.07485 -21.27780 -21.13856 -20.62043 -20.23665 -18.83704 -18.13917 -17.61521 -16.79617 -16.59971 -16.21042 -15.71370 -15.67845 -15.27657 -14.69043 -14.61001 -14.27134 -14.16319 -13.87891 -13.65074 -13.32538 -13.21685 -13.12171 -12.94691 -12.76043 -12.53404 -12.27121 -12.06670 -11.64710 -11.58047 -10.31191 -10.24009 -10.23518 -10.12215 -9.54970 -8.62638 -6.07401 0.66808 0.77338 1.37053 1.45356 1.48135 1.60437 1.88785 2.11365 2.38500 2.42982 3.19343 3.40662 3.59611 3.66557 4.05341 4.10803 4.14843 4.33956 4.57269 4.63406 4.76928 4.77320 4.97227 4.98835 5.11642 5.17813 5.28729 5.35783 5.60198 5.72674 6.23152 6.36129 6.44786 6.65165 6.85747 7.07329 7.33292 7.84945 8.53401 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.003794 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.211213 B = 7378.354066 C = 7433.583332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.089 3.911 3 N -0.324 5.324 4 N -0.466 5.466 5 H 0.452 0.548 6 C 0.127 3.873 7 C -0.099 4.099 8 C -0.281 4.281 9 C 0.204 3.796 10 N -0.687 5.687 11 C 0.520 3.480 12 O -0.565 6.565 13 C 0.391 3.609 14 O -0.619 6.619 15 N -0.512 5.512 16 C -0.345 4.345 17 H 0.097 0.903 18 C -0.004 4.004 19 N -0.896 5.896 20 Si 1.008 2.992 21 H -0.265 1.265 22 H -0.266 1.266 23 H -0.266 1.266 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.411 0.589 33 H 0.401 0.599 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 13.259 8.637 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 N -0.148 5.148 4 N -0.175 5.175 5 H 0.299 0.701 6 C -0.005 4.005 7 C -0.157 4.157 8 C -0.293 4.293 9 C 0.081 3.919 10 N -0.339 5.339 11 C 0.303 3.697 12 O -0.444 6.444 13 C 0.176 3.824 14 O -0.508 6.508 15 N -0.146 5.146 16 C -0.475 4.475 17 H 0.115 0.885 18 C -0.208 4.208 19 N -0.534 5.534 20 Si 0.829 3.171 21 H -0.189 1.189 22 H -0.191 1.191 23 H -0.191 1.191 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.236 0.764 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.061 14.319 8.764 18.212 hybrid contribution 0.192 -0.898 -0.595 1.094 sum 7.253 13.421 8.169 17.305 Atomic orbital electron populations 1.20307 0.85570 1.03743 1.04131 1.22595 0.97983 0.89992 0.97182 1.77264 0.87453 1.22690 1.27374 1.46207 1.07318 1.04967 1.59016 0.70086 1.21367 0.97383 0.85274 0.96479 1.20691 0.92151 0.98223 1.04666 1.19646 0.92437 0.95049 1.22127 1.19493 1.01614 0.89335 0.81410 1.45838 1.66257 1.11618 1.10183 1.19988 0.77648 0.83150 0.88898 1.90684 1.51595 1.55754 1.46409 1.19700 0.88952 0.84196 0.89541 1.90550 1.58594 1.55517 1.46179 1.41652 1.53060 1.10584 1.09308 1.19992 1.45260 0.97753 0.84454 0.88482 1.26495 0.94537 0.94984 1.04792 1.69550 1.41562 1.08103 1.34180 0.84664 0.78653 0.78329 0.75405 1.18885 1.19076 1.19137 0.88754 0.90186 0.90616 0.89251 0.88034 0.89111 0.90643 0.90159 0.75294 0.76423 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.12 71.24 0.72 -0.89 16 2 C 0.09 2.18 7.22 43.10 0.31 2.49 16 3 N -0.32 -7.98 12.70 -47.38 -0.60 -8.58 16 4 N -0.47 -8.62 7.36 -48.00 -0.35 -8.98 16 5 H 0.45 5.15 8.96 -213.34 -1.91 3.24 16 6 C 0.13 2.43 7.21 41.40 0.30 2.73 16 7 C -0.10 -1.29 10.22 71.24 0.73 -0.56 16 8 C -0.28 -6.66 5.47 -20.14 -0.11 -6.77 16 9 C 0.20 5.45 5.61 85.63 0.48 5.93 16 10 N -0.69 -22.95 5.54 -468.73 -2.60 -25.55 16 11 C 0.52 22.28 7.87 87.08 0.69 22.97 16 12 O -0.56 -25.93 16.47 -3.53 -0.06 -25.99 16 13 C 0.39 19.96 7.82 87.08 0.68 20.64 16 14 O -0.62 -33.71 16.03 -3.72 -0.06 -33.77 16 15 N -0.51 -27.98 5.25 -308.87 -1.62 -29.60 16 16 C -0.34 -19.38 9.67 84.35 0.82 -18.56 16 17 H 0.10 5.63 7.15 -2.91 -0.02 5.61 16 18 C 0.00 -0.20 5.51 85.14 0.47 0.27 16 19 N -0.90 -47.96 13.03 21.76 0.28 -47.68 16 20 Si 1.01 40.69 29.56 68.60 2.03 42.72 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.64 7.92 -2.39 -0.02 1.62 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.24 7.14 -2.39 -0.02 1.22 16 30 H 0.08 2.03 7.92 -2.39 -0.02 2.01 16 31 H 0.08 2.03 7.14 -2.39 -0.02 2.01 16 32 H 0.41 13.69 7.92 -92.70 -0.73 12.95 16 33 H 0.40 22.10 7.35 -92.71 -0.68 21.42 16 34 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 Total: -1.00 -69.73 306.32 -0.05 -69.78 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -2.15 Total: 39.40 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 5.08 Total: 28.25 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.89 Total: -120.38 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.12 Total: -59.76 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -69.73 -0.05 -69.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718290890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.922 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds