Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47246 * 2 1 4 4 C 1.34666 * 126.59589 * 275.02842 * 3 2 1 5 5 N 1.34121 * 108.02399 * 179.97438 * 4 3 2 6 6 C 1.30504 * 109.25569 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64988 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46976 * 274.97602 * 7 6 5 9 9 C 1.34780 * 119.99910 * 179.97438 * 8 7 6 10 10 O 1.21439 * 119.99857 * 0.02562 * 9 8 7 11 11 C 1.48832 * 120.00022 * 180.02562 * 9 8 7 12 12 O 1.21502 * 119.99564 * 0.02562 * 11 9 8 13 13 N 1.34772 * 120.00066 * 180.02562 * 11 9 8 14 14 C 1.36115 * 119.99868 * 180.02562 * 13 11 9 15 15 H 1.07998 * 120.00259 * 359.97438 * 14 13 11 16 16 C 1.39594 * 119.99929 * 180.02562 * 14 13 11 17 17 N 1.31014 * 119.99754 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00189 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47065 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47291 * 119.99397 * 18 16 14 21 21 H 1.48500 * 109.47226 * 240.00041 * 18 16 14 22 22 N 1.35039 * 108.70033 * 0.02562 * 6 5 4 23 23 H 0.97003 * 126.39946 * 180.02562 * 22 6 5 24 24 H 1.09001 * 109.47479 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46771 * 299.99507 * 1 2 3 26 26 H 1.09006 * 109.47394 * 59.99292 * 1 2 3 27 27 H 1.09001 * 109.46730 * 239.99748 * 2 1 3 28 28 H 1.09002 * 109.46941 * 120.00526 * 2 1 3 29 29 H 1.08001 * 125.98583 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.47407 * 34.97526 * 7 6 5 31 31 H 1.08995 * 109.47129 * 154.97895 * 7 6 5 32 32 H 0.96995 * 120.00056 * 0.02562 * 8 7 6 33 33 H 0.96995 * 119.99989 * 359.97438 * 13 11 9 34 34 H 0.96999 * 119.99949 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 -1.0770 5 7 2.6692 3.3956 -0.6514 6 6 2.7814 3.3725 0.6486 7 6 3.2631 4.5120 1.5090 8 7 4.7267 4.4928 1.5703 9 6 5.3835 5.4258 2.2877 10 8 4.7620 6.2822 2.8836 11 6 6.8704 5.4066 2.3496 12 8 7.4922 4.5500 1.7530 13 7 7.5271 6.3393 3.0674 14 6 8.8870 6.3220 3.1235 15 1 9.4397 5.5607 2.5932 16 6 9.5672 7.2877 3.8674 17 7 8.8966 8.2110 4.5111 18 14 11.4334 7.2636 3.9450 19 1 11.9478 6.1280 3.1381 20 1 11.9679 8.5386 3.4029 21 1 11.8681 7.1047 5.3560 22 7 2.3943 2.1582 1.0950 23 1 2.3756 1.8638 2.0190 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0173 1.9347 -2.1035 30 1 2.9298 5.4572 1.0803 31 1 2.8559 4.4055 2.5144 32 1 5.2231 3.8090 1.0941 33 1 7.0307 7.0233 3.5433 34 1 9.3692 8.8823 5.0277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719132161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -25.469298 kcal Electronic energy + Delta-G solvation = -19025.610529 eV Core-core repulsion = 15766.147642 eV Total energy + Delta-G solvation = -3259.462887 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32374 -39.46716 -37.25500 -35.09145 -34.34342 -33.79170 -32.50275 -31.42105 -29.63201 -26.76604 -25.51884 -23.66607 -22.54356 -21.19043 -20.61578 -19.55705 -18.40205 -17.76376 -16.76320 -16.10475 -15.36346 -15.16070 -14.85515 -14.77474 -14.46993 -14.18380 -13.91744 -13.78783 -13.26704 -12.94896 -12.74249 -12.63697 -12.20652 -11.94050 -11.78344 -11.56142 -11.22136 -10.56085 -10.42431 -10.38852 -10.18069 -10.10184 -9.74296 -8.87680 -8.58875 -8.23774 -8.23254 -6.68403 -4.00367 1.71093 2.40124 2.76482 2.88156 3.13299 3.16673 3.23766 3.59255 4.06738 4.19016 4.26720 4.49145 4.60298 4.90448 4.92483 5.05347 5.16898 5.21636 5.24222 5.38633 5.47500 5.58044 5.71536 5.79150 6.03452 6.05888 6.55567 6.61975 7.12976 7.30188 7.64139 7.83145 7.91267 8.29347 8.56523 8.94568 9.30217 9.83643 10.46494 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048282 B = 0.003187 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.792314 B = 8784.795136 C = 9042.629362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.018 4.018 4 C -0.023 4.023 5 N -0.467 5.467 6 C 0.193 3.807 7 C 0.209 3.791 8 N -0.711 5.711 9 C 0.517 3.483 10 O -0.544 6.544 11 C 0.395 3.605 12 O -0.596 6.596 13 N -0.498 5.498 14 C -0.305 4.305 15 H 0.113 0.887 16 C 0.031 3.969 17 N -0.868 5.868 18 Si 0.939 3.061 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 N -0.555 5.555 23 H 0.419 0.581 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.170 0.830 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.405 0.595 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 -13.196 -5.005 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.172 4.172 5 N -0.187 5.187 6 C -0.070 4.070 7 C 0.083 3.917 8 N -0.367 5.367 9 C 0.301 3.699 10 O -0.421 6.421 11 C 0.179 3.821 12 O -0.485 6.485 13 N -0.132 5.132 14 C -0.435 4.435 15 H 0.131 0.869 16 C -0.176 4.176 17 N -0.506 5.506 18 Si 0.764 3.236 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.203 1.203 22 N -0.159 5.159 23 H 0.257 0.743 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.188 0.812 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.249 0.751 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.245 -12.259 -5.373 19.547 hybrid contribution 0.499 -0.697 1.053 1.358 sum -13.745 -12.956 -4.320 19.377 Atomic orbital electron populations 1.21781 0.94370 1.01945 1.02470 1.20008 0.96051 0.89001 1.03619 1.21331 1.08331 0.96467 0.87277 1.22145 1.06093 0.90207 0.98749 1.70280 1.17287 1.23120 1.07998 1.23048 1.05096 0.87571 0.91318 1.19427 0.81319 0.93946 0.96961 1.45659 1.05441 1.33134 1.52466 1.20721 0.90119 0.80644 0.78385 1.90699 1.69852 1.36743 1.44823 1.18866 0.86323 0.87720 0.89188 1.90593 1.67820 1.39780 1.50281 1.41559 1.07542 1.24747 1.39380 1.19940 0.81065 1.13509 1.29015 0.86896 1.25599 1.01739 0.94887 0.95409 1.69490 1.37632 1.14589 1.28891 0.85662 0.80756 0.78788 0.78385 1.18696 1.20241 1.20295 1.43180 1.50459 1.12281 1.09934 0.74255 0.92002 0.92857 0.92015 0.89280 0.91120 0.81239 0.88224 0.89967 0.75102 0.75967 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.89 37.16 0.37 -0.45 16 2 C -0.05 -0.30 6.49 -27.89 -0.18 -0.48 16 3 C -0.02 -0.17 6.49 -81.60 -0.53 -0.70 16 4 C -0.02 -0.27 11.79 -17.82 -0.21 -0.48 16 5 N -0.47 -6.86 11.25 -10.82 -0.12 -6.98 16 6 C 0.19 2.52 7.52 -155.42 -1.17 1.35 16 7 C 0.21 2.92 6.30 -5.19 -0.03 2.89 16 8 N -0.71 -12.38 5.54 -62.11 -0.34 -12.72 16 9 C 0.52 11.15 7.87 -11.87 -0.09 11.06 16 10 O -0.54 -12.47 16.47 5.42 0.09 -12.38 16 11 C 0.39 9.97 7.82 -11.88 -0.09 9.88 16 12 O -0.60 -16.15 16.03 5.36 0.09 -16.07 16 13 N -0.50 -13.31 5.25 -11.59 -0.06 -13.37 16 14 C -0.30 -8.40 9.67 -15.15 -0.15 -8.54 16 15 H 0.11 3.19 7.15 -52.49 -0.38 2.81 16 16 C 0.03 0.79 5.51 -17.39 -0.10 0.70 16 17 N -0.87 -23.19 13.03 55.53 0.72 -22.47 16 18 Si 0.94 20.06 29.56 -169.99 -5.02 15.03 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 22 N -0.55 -5.58 6.15 -6.54 -0.04 -5.62 16 23 H 0.42 3.09 8.96 -40.82 -0.37 2.72 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.41 7.23 7.92 -40.82 -0.32 6.91 16 33 H 0.40 10.85 7.35 -40.82 -0.30 10.55 16 34 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -32.55 308.68 -6.10 -38.65 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -3.88 Total: 16.04 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -2.18 Total: 15.23 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.16 Total: -61.16 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: 0.18 Total: -28.44 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.55 -6.10 -38.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719132161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.184 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds