Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47246 * 2 1 4 4 C 1.34666 * 126.59589 * 275.02842 * 3 2 1 5 5 N 1.34121 * 108.02399 * 179.97438 * 4 3 2 6 6 C 1.30504 * 109.25569 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64988 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46976 * 274.97602 * 7 6 5 9 9 C 1.34780 * 119.99910 * 179.97438 * 8 7 6 10 10 O 1.21439 * 119.99857 * 0.02562 * 9 8 7 11 11 C 1.48832 * 120.00022 * 180.02562 * 9 8 7 12 12 O 1.21502 * 119.99564 * 0.02562 * 11 9 8 13 13 N 1.34772 * 120.00066 * 180.02562 * 11 9 8 14 14 C 1.36115 * 119.99868 * 180.02562 * 13 11 9 15 15 H 1.07998 * 120.00259 * 359.97438 * 14 13 11 16 16 C 1.39594 * 119.99929 * 180.02562 * 14 13 11 17 17 N 1.31014 * 119.99754 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00189 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47065 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47291 * 119.99397 * 18 16 14 21 21 H 1.48500 * 109.47226 * 240.00041 * 18 16 14 22 22 N 1.35039 * 108.70033 * 0.02562 * 6 5 4 23 23 H 0.97003 * 126.39946 * 180.02562 * 22 6 5 24 24 H 1.09001 * 109.47479 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46771 * 299.99507 * 1 2 3 26 26 H 1.09006 * 109.47394 * 59.99292 * 1 2 3 27 27 H 1.09001 * 109.46730 * 239.99748 * 2 1 3 28 28 H 1.09002 * 109.46941 * 120.00526 * 2 1 3 29 29 H 1.08001 * 125.98583 * 0.02562 * 4 3 2 30 30 H 1.09005 * 109.47407 * 34.97526 * 7 6 5 31 31 H 1.08995 * 109.47129 * 154.97895 * 7 6 5 32 32 H 0.96995 * 120.00056 * 0.02562 * 8 7 6 33 33 H 0.96995 * 119.99989 * 359.97438 * 13 11 9 34 34 H 0.96999 * 119.99949 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 -1.0770 5 7 2.6692 3.3956 -0.6514 6 6 2.7814 3.3725 0.6486 7 6 3.2631 4.5120 1.5090 8 7 4.7267 4.4928 1.5703 9 6 5.3835 5.4258 2.2877 10 8 4.7620 6.2822 2.8836 11 6 6.8704 5.4066 2.3496 12 8 7.4922 4.5500 1.7530 13 7 7.5271 6.3393 3.0674 14 6 8.8870 6.3220 3.1235 15 1 9.4397 5.5607 2.5932 16 6 9.5672 7.2877 3.8674 17 7 8.8966 8.2110 4.5111 18 14 11.4334 7.2636 3.9450 19 1 11.9478 6.1280 3.1381 20 1 11.9679 8.5386 3.4029 21 1 11.8681 7.1047 5.3560 22 7 2.3943 2.1582 1.0950 23 1 2.3756 1.8638 2.0190 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0173 1.9347 -2.1035 30 1 2.9298 5.4572 1.0803 31 1 2.8559 4.4055 2.5144 32 1 5.2231 3.8090 1.0941 33 1 7.0307 7.0233 3.5433 34 1 9.3692 8.8823 5.0277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719132161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -50.924999 kcal Electronic energy + Delta-G solvation = -19026.714371 eV Core-core repulsion = 15766.147642 eV Total energy + Delta-G solvation = -3260.566729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.22180 -41.27283 -39.17214 -36.65771 -35.92880 -34.81726 -33.49128 -33.35971 -30.71938 -28.17218 -27.12665 -24.57879 -24.04108 -22.09519 -21.54349 -21.25581 -20.40201 -19.15965 -18.11302 -17.76048 -16.91466 -16.74195 -16.31040 -15.83885 -15.71967 -15.43991 -15.26886 -14.79066 -14.66355 -14.49155 -13.90205 -13.70089 -13.68125 -13.26021 -12.97689 -12.58178 -12.47207 -12.35495 -12.08485 -12.02746 -11.68500 -11.10727 -11.01428 -10.36560 -10.32739 -10.27705 -9.34121 -8.66874 -6.11515 0.56319 0.77388 1.41674 1.45730 1.56785 1.69020 2.01876 2.16951 2.34578 2.36773 3.14166 3.21425 3.28114 3.84140 3.97279 4.02809 4.14390 4.34086 4.44655 4.49247 4.66074 4.75697 4.92194 5.07776 5.11662 5.25103 5.34051 5.38478 5.66700 5.70922 6.07920 6.32613 6.36729 6.76043 6.96077 7.00080 7.26526 7.79053 8.49086 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048282 B = 0.003187 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.792314 B = 8784.795136 C = 9042.629362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.004 3.996 4 C -0.051 4.051 5 N -0.503 5.503 6 C 0.173 3.827 7 C 0.211 3.789 8 N -0.692 5.692 9 C 0.525 3.475 10 O -0.559 6.559 11 C 0.389 3.611 12 O -0.619 6.619 13 N -0.508 5.508 14 C -0.344 4.344 15 H 0.098 0.902 16 C -0.004 4.004 17 N -0.894 5.894 18 Si 1.010 2.990 19 H -0.265 1.265 20 H -0.266 1.266 21 H -0.265 1.265 22 N -0.543 5.543 23 H 0.433 0.567 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.186 0.814 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.414 0.586 33 H 0.402 0.598 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.870 -14.613 -4.868 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.199 4.199 5 N -0.223 5.223 6 C -0.090 4.090 7 C 0.087 3.913 8 N -0.345 5.345 9 C 0.308 3.692 10 O -0.437 6.437 11 C 0.174 3.826 12 O -0.508 6.508 13 N -0.142 5.142 14 C -0.474 4.474 15 H 0.116 0.884 16 C -0.209 4.209 17 N -0.532 5.532 18 Si 0.831 3.169 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.189 1.189 22 N -0.148 5.148 23 H 0.274 0.726 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.203 0.797 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.250 0.750 33 H 0.237 0.763 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.725 -13.691 -5.227 20.775 hybrid contribution 0.502 -0.360 0.938 1.123 sum -14.223 -14.051 -4.289 20.448 Atomic orbital electron populations 1.21756 0.93599 1.02947 1.01969 1.20176 0.96528 0.86721 1.05052 1.21883 1.05720 0.97407 0.86355 1.22560 1.07174 0.89881 1.00315 1.70191 1.18165 1.24966 1.09028 1.22640 1.06963 0.88398 0.90977 1.19539 0.78668 0.94531 0.98538 1.45600 1.07128 1.31391 1.50411 1.19988 0.88444 0.81495 0.79232 1.90695 1.69545 1.37592 1.45895 1.19540 0.88140 0.86809 0.88077 1.90559 1.69034 1.40394 1.50854 1.41642 1.07586 1.25111 1.39892 1.20009 0.81662 1.14686 1.31044 0.88411 1.26542 1.06526 0.93736 0.94065 1.69549 1.39706 1.14961 1.28962 0.84643 0.74469 0.78956 0.78860 1.18851 1.19082 1.18943 1.43138 1.49423 1.11330 1.10888 0.72639 0.90275 0.93401 0.92511 0.87855 0.89692 0.79650 0.88748 0.87698 0.75018 0.76337 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 71.98 0.71 -0.50 16 2 C -0.05 -0.44 6.49 29.85 0.19 -0.25 16 3 C 0.00 0.07 6.49 40.95 0.27 0.34 16 4 C -0.05 -1.14 11.79 83.52 0.98 -0.15 16 5 N -0.50 -14.49 11.25 -188.14 -2.12 -16.60 16 6 C 0.17 4.35 7.52 138.13 1.04 5.39 16 7 C 0.21 5.74 6.30 85.63 0.54 6.27 16 8 N -0.69 -23.81 5.54 -468.73 -2.60 -26.41 16 9 C 0.53 22.78 7.87 87.08 0.69 23.47 16 10 O -0.56 -25.61 16.47 -3.53 -0.06 -25.67 16 11 C 0.39 20.09 7.82 87.08 0.68 20.77 16 12 O -0.62 -34.18 16.03 -3.72 -0.06 -34.24 16 13 N -0.51 -27.92 5.25 -308.88 -1.62 -29.54 16 14 C -0.34 -19.41 9.67 84.36 0.82 -18.59 16 15 H 0.10 5.70 7.15 -2.91 -0.02 5.67 16 16 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 17 N -0.89 -47.86 13.03 21.77 0.28 -47.58 16 18 Si 1.01 40.75 29.56 68.60 2.03 42.77 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 N -0.54 -9.89 6.15 -174.60 -1.07 -10.97 16 23 H 0.43 5.35 8.96 -92.71 -0.83 4.52 16 24 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.41 14.37 7.92 -92.71 -0.73 13.63 16 33 H 0.40 22.15 7.35 -92.71 -0.68 21.47 16 34 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 Total: -1.00 -70.55 308.68 0.10 -70.45 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -1.08 Total: 40.78 kcal Atomic # 6 Polarization: 30.61 SS G_CDS: 6.39 Total: 36.99 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -7.12 Total: -131.09 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -0.12 Total: -59.91 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -70.55 0.10 -70.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719132161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.529 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds